Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003368g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 2.4e-66 255.4 131 100.0
Nitab4.5_0002991g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 1.6e-65 252.7 131 98.5
Nitab4.5_0001809g0020 Nicotiana tabacum HOM05D005265 ORTHO05D006326 9.5e-63 243.4 131 94.7
Peaxi162Scf00045g02242 Petunia axillaris HOM05D005265 ORTHO05D006326 2.8e-62 241.9 132 95.5
Nitab4.5_0000100g0280 Nicotiana tabacum HOM05D005265 ORTHO05D006326 6.2e-62 240.7 131 93.1
Sopen08g002900 Solanum pennellii HOM05D005265 ORTHO05D006326 6.8e-61 237.3 131 91.6
CAN.G1882.1 Capsicum annuum HOM05D005265 ORTHO05D006326 1.5e-60 236.1 131 90.8
Solyc08g006930.3 Solanum lycopersicum HOM05D005265 ORTHO05D006326 1.5e-60 236.1 131 90.8
PGSC0003DMG400020505 Solanum tuberosum HOM05D005265 ORTHO05D006326 2.0e-60 235.7 131 90.8
Dinv15893 Davidia involucrata HOM05D005265 ORTHO05D006326 3.4e-60 235.0 131 90.8
Migut.M01877 Erythranthe guttata HOM05D005265 ORTHO05D006326 2.9e-59 231.9 131 90.1
Hma1.2p1_0689F.1_g203690 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 2.9e-59 231.9 131 88.5
Hma1.2p1_1418F.1_g282220 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 2.9e-59 231.9 131 88.5
GSVIVG01021584001 Vitis vinifera HOM05D005265 ORTHO05D006326 2.9e-59 231.9 131 91.6
Dinv32199 Davidia involucrata HOM05D005265 ORTHO05D006326 1.9e-58 229.2 131 87.8
Lj1g0015817 Lotus japonicus HOM05D005265 ORTHO05D006326 9.2e-58 226.9 131 88.5
arahy.Tifrunner.gnm1.ann1.9042LP Arachis hypogaea HOM05D005265 ORTHO05D006326 1.2e-57 226.5 131 88.5
Cpa.g.sc17.68 Carica papaya HOM05D005265 ORTHO05D006326 1.6e-57 226.1 131 88.5
THA.LOC104814318 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 2.1e-57 225.7 133 88.7
arahy.Tifrunner.gnm1.ann1.ZS1M1K Arachis hypogaea HOM05D005265 ORTHO05D006326 2.7e-57 225.3 131 88.5
SalBow8G5437 Salvia bowleyana HOM05D005265 ORTHO05D006326 2.7e-57 225.3 131 88.5
THA.LOC104812683 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 3.5e-57 224.9 131 87.8
Oeu040090.1 Olea europaea HOM05D005265 ORTHO05D006326 4.6e-57 224.6 131 87.0
CARHR029770 Cardamine hirsuta HOM05D005265 ORTHO05D006326 6.0e-57 224.2 131 86.3
AT1G30380 Arabidopsis thaliana HOM05D005265 ORTHO05D006326 7.8e-57 223.8 131 85.5
FAN25G1721 Fragaria x ananassa HOM05D005265 ORTHO05D006326 1.0e-56 223.4 130 89.2
Haze_05746 Corylus avellana HOM05D005265 ORTHO05D006326 1.3e-56 223.0 131 85.5
PGR083G1323 Punica granatum HOM05D005265 ORTHO05D006326 1.3e-56 223.0 131 87.0
RcHm_v2.0_Chr5g0015361 Rosa chinensis HOM05D005265 ORTHO05D006326 1.3e-56 223.0 130 89.2
BcaB03g12211 Brassica carinata HOM05D005265 ORTHO05D006326 2.3e-56 222.2 131 85.5
Duzib132G0868 Durio zibethinus HOM05D005265 ORTHO05D006326 2.3e-56 222.2 131 87.0
FAN16G0550 Fragaria x ananassa HOM05D005265 ORTHO05D006326 2.3e-56 222.2 130 88.5
MSTRG.7528 Avicennia marina HOM05D005265 ORTHO05D006326 3.0e-56 221.9 133 85.7
Thecc.02G010800 Theobroma cacao HOM05D005265 ORTHO05D006326 3.0e-56 221.9 131 86.3
CSS0007721 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 3.9e-56 221.5 132 86.4
CSS0016265 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 3.9e-56 221.5 132 86.4
CANSAT35G0137 Cannabis sativa HOM05D005265 ORTHO05D006326 3.9e-56 221.5 131 86.3
DCAR_004804 Daucus carota HOM05D005265 ORTHO05D006326 3.9e-56 221.5 131 86.3
Gohir.D02G238400 Gossypium hirsutum HOM05D005265 ORTHO05D006326 5.1e-56 221.1 132 87.1
Gorai.005G266900 Gossypium raimondii HOM05D005265 ORTHO05D006326 5.1e-56 221.1 132 87.1
Phvul.009G216400 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 5.1e-56 221.1 131 87.0
VMungo1309G1099 Vigna mungo HOM05D005265 ORTHO05D006326 5.1e-56 221.1 131 87.0
BcaC01g00188 Brassica carinata HOM05D005265 ORTHO05D006326 6.6e-56 220.7 131 84.7
A08p24490 Brassica napus HOM05D005265 ORTHO05D006326 6.6e-56 220.7 131 84.7
C03p76720 Brassica napus HOM05D005265 ORTHO05D006326 6.6e-56 220.7 131 84.7
BraA08t34405Z Brassica rapa HOM05D005265 ORTHO05D006326 6.6e-56 220.7 131 84.7
CiPaw.09G117100 Carya illinoinensis HOM05D005265 ORTHO05D006326 6.6e-56 220.7 131 86.3
FvH4_3g09680 Fragaria vesca HOM05D005265 ORTHO05D006326 6.6e-56 220.7 130 87.7
FAN11G2263 Fragaria x ananassa HOM05D005265 ORTHO05D006326 6.6e-56 220.7 130 87.7
COL.COLO4_17668 Corchorus olitorius HOM05D005265 ORTHO05D006326 8.6e-56 220.3 131 84.0
Manes.14G134800 Manihot esculenta HOM05D005265 ORTHO05D006326 8.6e-56 220.3 131 85.5
Prupe.4G088200 Prunus persica HOM05D005265 ORTHO05D006326 1.1e-55 219.9 130 88.5
Cc09_g08490 Coffea canephora HOM05D005265 ORTHO05D006326 1.5e-55 219.5 131 84.0
Glyma.15G194300 Glycine max HOM05D005265 ORTHO05D006326 1.5e-55 219.5 131 86.3
HanXRQChr04g0113581 Helianthus annuus HOM05D005265 ORTHO05D006326 1.5e-55 219.5 131 85.5
Sp1g26220 Schrenkiella parvula HOM05D005265 ORTHO05D006326 2.5e-55 218.8 131 84.0
Cfa000859 Carpinus fangiana HOM05D005265 ORTHO05D006326 3.3e-55 218.4 131 84.0
Phvul.002G140800 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 3.3e-55 218.4 131 87.0
BraA09t39132Z Brassica rapa HOM05D005265 ORTHO05D006326 4.3e-55 218.0 132 84.8
DCAR_004805 Daucus carota HOM05D005265 ORTHO05D006326 4.3e-55 218.0 131 84.7
Gohir.A03G216800 Gossypium hirsutum HOM05D005265 ORTHO05D006326 4.3e-55 218.0 132 86.4
CiPaw.10G086700 Carya illinoinensis HOM05D005265 ORTHO05D006326 7.3e-55 217.2 131 84.0
BcaC05g27071 Brassica carinata HOM05D005265 ORTHO05D006326 1.2e-54 216.5 132 84.1
A09p36080 Brassica napus HOM05D005265 ORTHO05D006326 1.2e-54 216.5 132 84.1
C05p29330 Brassica napus HOM05D005265 ORTHO05D006326 1.2e-54 216.5 132 84.1
BolC5t31665H Brassica oleracea HOM05D005265 ORTHO05D006326 1.2e-54 216.5 132 84.1
Ca_12734_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 1.2e-54 216.5 132 86.4
Ca_12740_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 1.2e-54 216.5 132 86.4
Manes.06G061100 Manihot esculenta HOM05D005265 ORTHO05D006326 1.2e-54 216.5 130 83.8
TAR626G0103 Trochodendron aralioides HOM05D005265 ORTHO05D006326 2.1e-54 215.7 130 85.4
AL1G44320 Arabidopsis lyrata HOM05D005265 ORTHO05D006326 2.8e-54 215.3 132 83.3
Carub.0001s2858 Capsella rubella HOM05D005265 ORTHO05D006326 3.6e-54 214.9 131 84.7
Eucgr.D00234 Eucalyptus grandis HOM05D005265 ORTHO05D006326 3.6e-54 214.9 132 85.6
Sc24g0001600 Simmondsia chinensis HOM05D005265 ORTHO05D006326 3.6e-54 214.9 131 82.4
TAR624G1044 Trochodendron aralioides HOM05D005265 ORTHO05D006326 4.7e-54 214.5 131 84.7
Lalb_Chr08g0233241 Lupinus albus HOM05D005265 ORTHO05D006326 6.2e-54 214.2 131 82.4
ClCG01G025030 Citrullus lanatus HOM05D005265 ORTHO05D006326 8.1e-54 213.8 132 84.8
Sed0012654 Sechium edule HOM05D005265 ORTHO05D006326 1.1e-53 213.4 132 87.1
TAR626G0742 Trochodendron aralioides HOM05D005265 ORTHO05D006326 1.1e-53 213.4 130 84.6
BcaB07g32648 Brassica carinata HOM05D005265 ORTHO05D006326 1.8e-53 212.6 131 83.2
Thhalv10009090m.g Eutrema salsugineum HOM05D005265 ORTHO05D006326 1.8e-53 212.6 132 83.3
MD00G1109700 Malus domestica HOM05D005265 ORTHO05D006326 1.8e-53 212.6 130 84.6
Potri.006G254200 Populus trichocarpa HOM05D005265 ORTHO05D006326 1.8e-53 212.6 134 85.8
Sabra18G0029900 Salix brachista HOM05D005265 ORTHO05D006326 2.3e-53 212.2 132 85.6
EL10Ac7g15766 Beta vulgaris HOM05D005265 ORTHO05D006326 3.1e-53 211.8 131 83.2
Duzib052G0655 Durio zibethinus HOM05D005265 ORTHO05D006326 4.0e-53 211.5 131 83.2
QL05p054070 Quercus lobata HOM05D005265 ORTHO05D006326 4.0e-53 211.5 131 82.4
ECA236G4370 Erigeron canadensis HOM05D005265 ORTHO05D006326 5.2e-53 211.1 133 82.7
Duzib248G0887 Durio zibethinus HOM05D005265 ORTHO05D006326 6.8e-53 210.7 131 85.5
SGA_v2.0_scaffold223G42844 Striga asiatica HOM05D005265 ORTHO05D006326 6.8e-53 210.7 131 84.0
BolC3t19927H Brassica oleracea HOM05D005265 ORTHO05D006326 1.2e-52 209.9 131 82.4
HanXRQChr15g0481551 Helianthus annuus HOM05D005265 ORTHO05D006326 1.2e-52 209.9 131 83.2
Glyma.09G087700 Glycine max HOM05D005265 ORTHO05D006326 1.5e-52 209.5 134 84.3
Ciclev10017170m.g Citrus clementina HOM05D005265 ORTHO05D006326 2.6e-52 208.8 129 82.9
Potri.018G027600 Populus trichocarpa HOM05D005265 ORTHO05D006326 5.8e-52 207.6 132 84.8
Aa31LG6G5400 Aethionema arabicum HOM05D005265 ORTHO05D006326 7.6e-52 207.2 132 80.3
MD05G1276100 Malus domestica HOM05D005265 ORTHO05D006326 7.6e-52 207.2 134 82.1
Medtr1g026820 Medicago truncatula HOM05D005265 ORTHO05D006326 9.9e-52 206.8 132 81.8
Atru.chr10.966 Acer truncatum HOM05D005265 ORTHO05D006326 1.3e-51 206.5 131 83.2
Actinidia13436 Actinidia chinensis HOM05D005265 ORTHO05D006326 1.3e-51 206.5 131 81.7
Aqoxy4G00026 Aquilegia oxysepala HOM05D005265 ORTHO05D006326 1.3e-51 206.5 130 80.8
AUR62038135 Chenopodium quinoa HOM05D005265 ORTHO05D006326 2.9e-51 205.3 132 82.6
CsaV3_6G052210 Cucumis sativus L. HOM05D005265 ORTHO05D006326 2.9e-51 205.3 129 83.7
unitig_61.g26080 Utricularia gibba HOM05D005265 ORTHO05D006326 2.9e-51 205.3 129 81.4
MELO3C007091.2 Cucumis melo HOM05D005265 ORTHO05D006326 6.4e-51 204.1 132 83.3
vmacro03415 Vaccinium macrocarpon HOM05D005265 ORTHO05D006326 6.4e-51 204.1 131 79.4
TWI09G0405 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 8.4e-51 203.8 132 79.5
Sed0026922 Sechium edule HOM05D005265 ORTHO05D006326 1.1e-50 203.4 133 82.7
PSO541G2745 Papaver somniferum HOM05D005265 ORTHO05D006326 3.2e-50 201.8 130 80.8
PSO675G1042 Papaver somniferum HOM05D005265 ORTHO05D006326 3.2e-50 201.8 130 80.8
CDE01G0641 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 4.1e-50 201.4 130 78.5
TWI73G0862 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 4.1e-50 201.4 132 78.8
CDE12G0489 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 7.1e-50 200.7 130 77.7
AUR62009823 Chenopodium quinoa HOM05D005265 ORTHO05D006326 7.1e-50 200.7 132 81.1
FAN21G2293 Fragaria x ananassa HOM05D005265 ORTHO05D006326 3.5e-49 198.4 177 65.5
Actinidia33666 Actinidia chinensis HOM05D005265 ORTHO05D006326 4.6e-49 198.0 131 78.6
TPR.G24497 Trifolium pratense HOM05D005265 ORTHO05D006326 6.0e-49 197.6 133 79.7
Lsat_1_v5_gn_7_32001 Lactuca sativa HOM05D005265 ORTHO05D006326 7.8e-49 197.2 133 78.9
Ah.08g216220 Amaranthus hybridus HOM05D000506 ORTHO05D000369 3.9e-48 194.9 124 79.8
MBI02_g44634_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 1.5e-47 193.0 130 77.7
MBI02_g40641_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 1.9e-47 192.6 130 77.7
Psat0s1315g0080 Pisum sativum HOM05D005265 ORTHO05D006326 6.2e-46 187.6 163 65.6
Rhsim13G0119400 Rhododendron simsii HOM05D005265 ORTHO05D006326 1.4e-45 186.4 131 74.8
Hund18717 Selenicereus undatus HOM05D005265 ORTHO05D006326 2.4e-45 185.7 137 73.0
HPP92_019500 Vanilla planifolia HOM05D005265 ORTHO05D006326 3.1e-45 185.3 129 76.0
Lalb_Chr23g0275991 Lupinus albus HOM05D005265 ORTHO05D006326 8.9e-45 183.7 103 89.3
ATR0681G400 Amborella trichopoda HOM05D005265 ORTHO05D006326 4.4e-44 181.4 130 74.6
Zm00001eb299990 Zea mays HOM05D005265 ORTHO05D006326 7.1e-42 174.1 130 69.2
Sp4g16930 Schrenkiella parvula HOM05D005265 ORTHO05D006326 1.6e-41 172.9 133 69.2
Os07g0148900 Oryza sativa ssp. japonica HOM05D005265 ORTHO05D006326 4.6e-41 171.4 124 72.6
Pp3c13_10540 Physcomitrium patens HOM05D005265 ORTHO05D006326 1.5e-39 166.4 132 68.2
SEGI_05857 Sequoiadendron giganteum HOM05D005265 ORTHO05D006326 7.3e-39 164.1 124 68.5
Pp3c3_10740 Physcomitrium patens HOM05D005265 ORTHO05D006326 2.1e-38 162.5 132 67.4
Mapoly0125s0033 Marchantia polymorpha HOM05D005265 ORTHO05D006326 8.1e-38 160.6 130 68.5
Nn4g26654 Nelumbo nucifera HOM05D005265 ORTHO05D006326 1.3e-35 153.3 125 70.4
Nn3g20272 Nelumbo nucifera HOM05D005265 ORTHO05D006326 2.9e-35 152.1 127 68.5
Pp3c13_10520 Physcomitrium patens HOM05D005265 ORTHO05D006326 1.3e-32 143.3 132 60.6
AagrBONN_evm.TU.Sc2ySwM_369.184 Anthoceros agrestis HOM05D005265 ORTHO05D006326 1.9e-31 139.4 132 62.1
CBR_g39729 Chara braunii HOM05D005265 ORTHO05D006326 1.6e-25 119.8 109 56.9
SMO358G0410 Selaginella moellendorffii HOM05D005265 ORTHO05D006326 6.7e-24 114.4 78 74.4
Cre17.g724300 Chlamydomonas reinhardtii HOM05D005265 ORTHO05D006326 4.5e-20 101.7 105 53.3
Nn8g40769 Nelumbo nucifera HOM05D005265 ORTHO05D006326 1.1e-18 97.1 66 72.7
RcHm_v2.0_Chr5g0036151 Rosa chinensis HOM05D005265 ORTHO05D006326 3.1e-13 79.0 48 81.2
MCO04G068 Micromonas commoda HOM05D005265 ORTHO05D006326 1.0e-08 63.9 78 43.6
PRCOL_00005455 Prasinoderma coloniale HOM05D005265 ORTHO05D006326 1.3e-08 63.5 92 40.2


User provided reference genes

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