Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 9.2e-234 813.1 399 100.0
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.3e-200 703.0 381 90.3
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.9e-154 549.7 391 71.9
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 8.5e-147 524.2 391 68.8
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 3.2e-146 522.3 391 69.1
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 1.6e-140 503.4 390 64.1
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 4.2e-130 468.8 377 64.2
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 2.3e-104 383.3 452 47.6
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 3.2e-101 372.9 374 51.3
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 1.2e-89 334.3 390 47.4
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 2.8e-89 333.2 403 46.4
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 5.2e-88 328.9 384 45.8
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 1.6e-84 317.4 391 43.7
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 4.6e-84 315.8 387 46.5
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 4.6e-84 315.8 393 45.8
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 1.7e-83 313.9 312 50.3
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 2.4e-77 293.5 388 43.3
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 1.6e-76 290.8 379 42.5
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 3.5e-76 289.7 378 40.7
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 3.9e-75 286.2 384 38.8
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 1.1e-74 284.6 455 37.4
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 1.9e-74 283.9 426 38.7
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 1.6e-73 280.8 387 41.3
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 3.6e-73 279.6 400 40.5
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 8.1e-73 278.5 310 51.3
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 1.2e-71 274.6 393 38.2
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 3.4e-71 273.1 392 41.8
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.3e-70 271.2 384 38.0
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 4.9e-70 269.2 387 40.1
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 4.9e-70 269.2 389 36.5
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 3.2e-69 266.5 383 37.1
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 1.2e-68 264.6 390 41.8
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 6.0e-68 262.3 385 39.5
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.0e-67 261.5 388 36.9
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 1.8e-67 260.8 383 39.2
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 1.8e-67 260.8 385 40.5
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 1.8e-67 260.8 424 36.1
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 5.1e-67 259.2 393 39.9
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 5.1e-67 259.2 389 39.1
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 5.1e-67 259.2 386 40.2
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 5.6e-66 255.8 377 37.1
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 5.6e-66 255.8 380 38.9
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 5.6e-66 255.8 376 38.8
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 9.6e-66 255.0 386 38.6
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 4.8e-65 252.7 396 40.7
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 6.2e-65 252.3 389 37.5
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 2.4e-64 250.4 382 38.7
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 6.9e-64 248.8 382 38.7
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 6.9e-64 248.8 370 38.4
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 1.2e-63 248.1 384 37.5
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 1.5e-63 247.7 381 38.6
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 4.5e-63 246.1 223 52.5
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 1.0e-62 245.0 382 36.4
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 4.9e-62 242.7 405 35.1
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 1.9e-61 240.7 394 37.8
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 1.9e-61 240.7 385 34.8
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 2.5e-61 240.4 405 33.8
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 5.5e-61 239.2 382 37.4
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.2e-60 238.0 378 38.4
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 1.0e-59 235.0 381 38.3
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 5.1e-59 232.6 379 37.2
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 1.1e-58 231.5 179 59.2
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 1.5e-58 231.1 495 31.9
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 1.5e-58 231.1 378 35.4
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 3.3e-58 229.9 384 34.9
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 9.6e-58 228.4 442 36.0
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 9.6e-58 228.4 189 54.0
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 1.1e-56 224.9 390 37.4
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 1.1e-56 224.9 390 36.9
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 1.4e-56 224.6 381 34.9
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 1.5e-55 221.1 176 56.2
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 4.5e-55 219.5 378 36.8
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 1.0e-54 218.4 226 48.7
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 5.0e-54 216.1 331 38.1
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 3.2e-53 213.4 364 34.9
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 1.3e-51 208.0 383 35.8
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 2.3e-51 207.2 418 32.1
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 5.1e-51 206.1 470 30.9
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 6.7e-51 205.7 170 51.8
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 1.1e-50 204.9 374 34.0
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 1.5e-50 204.5 390 33.3
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 4.3e-50 203.0 449 30.3
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 9.0e-48 195.3 330 34.5
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.3e-46 191.4 258 40.3
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 2.9e-46 190.3 171 47.4
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 8.5e-46 188.7 340 33.8
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 1.1e-45 188.3 384 31.5
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 1.9e-45 187.6 244 40.2
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 5.5e-45 186.0 407 34.2
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 5.5e-45 186.0 191 44.5
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 2.7e-44 183.7 376 33.2
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 2.7e-44 183.7 193 44.0
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 4.6e-44 183.0 368 34.0
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 6.1e-44 182.6 384 31.8
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 1.8e-43 181.0 377 32.6
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 2.0e-42 177.6 198 46.0
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 9.7e-42 175.3 231 40.3
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 1.7e-41 174.5 190 44.7
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 2.2e-41 174.1 191 44.5
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 1.1e-40 171.8 384 30.2
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 3.1e-40 170.2 386 29.5
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 5.3e-40 169.5 189 43.9
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 9.1e-40 168.7 383 30.3
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 5.9e-39 166.0 372 31.7
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 1.3e-38 164.9 194 40.2
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 1.3e-38 164.9 383 32.6
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 2.9e-38 163.7 192 43.2
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 3.8e-38 163.3 259 35.5
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 1.9e-37 161.0 188 42.0
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 2.5e-37 160.6 310 34.2
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 5.5e-37 159.5 212 41.5
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.6e-36 157.9 382 29.1
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 3.6e-36 156.8 175 42.9
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 7.9e-36 155.6 176 43.8
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 2.3e-35 154.1 176 43.2
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 6.7e-35 152.5 173 42.8
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 4.8e-33 146.4 164 43.3
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 6.3e-33 146.0 175 41.7
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 6.3e-33 146.0 194 40.7
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 6.3e-33 146.0 194 40.7
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 1.4e-32 144.8 197 40.6
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 1.4e-32 144.8 175 45.1
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 1.4e-32 144.8 175 45.1
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 1.8e-32 144.4 197 40.6
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 5.3e-32 142.9 196 40.3
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 5.3e-32 142.9 97 62.9
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 9.1e-32 142.1 194 40.7
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 2.6e-31 140.6 184 37.0
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 3.5e-31 140.2 175 42.9
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 1.3e-30 138.3 196 39.3
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 1.7e-30 137.9 169 42.0
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 8.5e-30 135.6 175 41.7
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 4.7e-28 129.8 295 31.5
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 8.0e-28 129.0 399 27.3
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 2.6e-26 124.0 115 44.3
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 4.4e-26 123.2 190 31.6
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 7.5e-26 122.5 118 44.9
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 1.7e-25 121.3 195 33.3
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 1.1e-24 118.6 175 38.9
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 9.1e-24 115.5 151 39.1
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 9.1e-24 115.5 151 39.1
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 1.2e-23 115.2 244 31.1
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.0e-23 114.4 99 47.5
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 4.5e-23 113.2 136 40.4
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 5.9e-23 112.8 311 27.0
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 5.9e-23 112.8 118 44.1
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 2.2e-22 110.9 305 26.9
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 5.0e-22 109.8 114 40.4
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 9.4e-21 105.5 141 38.3
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 3.0e-19 100.5 153 36.6
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 6.8e-19 99.4 129 38.8
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 5.7e-18 96.3 342 26.9
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 2.2e-17 94.4 87 47.1
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 3.7e-17 93.6 257 30.0
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 4.1e-16 90.1 174 29.9
PSO386G0085 Papaver somniferum HOM05D003860 ORTHO05D004218 5.4e-16 89.7 253 29.2
PSO724G0039 Papaver somniferum HOM05D003860 ORTHO05D004218 1.0e-14 85.5 255 27.5
AagrBONN_evm.TU.Sc2ySwM_117.2824 Anthoceros agrestis HOM05D003860 ORTHO05D004218 1.0e-11 75.5 132 31.8
Cpa.g.sc126.45 Carica papaya HOM05D003860 ORTHO05D004218 2.3e-11 74.3 64 53.1
FvH4_3g26751 Fragaria vesca HOM05D003860 ORTHO05D004218 5.2e-11 73.2 60 48.3
Ciclev10007055m.g Citrus clementina HOM05D003860 ORTHO05D004218 6.8e-11 72.8 202 31.7
QL08p004822 Quercus lobata HOM05D001580 ORTHO05D001517 2.6e-10 70.9 170 31.2
Cpa.g.sc126.47 Carica papaya HOM05D003860 ORTHO05D004218 1.3e-09 68.6 51 54.9
HPP92_016073 Vanilla planifolia HOM05D003860 ORTHO05D004218 1.7e-09 68.2 70 37.1
Migut.G00446 Erythranthe guttata HOM05D003860 ORTHO05D004218 2.2e-09 67.8 213 35.7
FAN11G2919 Fragaria x ananassa HOM05D003860 ORTHO05D004218 2.4e-08 64.3 55 49.1
Sopen11g001500 Solanum pennellii HOM05D001580 ORTHO05D001517 2.4e-08 64.3 178 27.5
Rhsim04G0013900 Rhododendron simsii HOM05D001580 ORTHO05D001517 3.1e-08 63.9 163 31.3
PSO675G2706 Papaver somniferum HOM05D001580 ORTHO05D001517 4.1e-08 63.5 338 24.0
SalBow6G0760 Salvia bowleyana HOM05D003860 ORTHO05D004218 4.1e-08 63.5 202 29.2
GSVIVG01003480001 Vitis vinifera HOM05D001580 ORTHO05D001517 1.2e-07 62.0 180 28.3
PSO541G3019 Papaver somniferum HOM05D001580 ORTHO05D001517 5.9e-07 59.7 338 22.8
C03p18530 Brassica napus HOM05D003860 ORTHO05D004218 1.7e-06 58.2 122 28.7
BolC3t14250H Brassica oleracea HOM05D003860 ORTHO05D004218 1.7e-06 58.2 122 28.7
Cpa.g.sc126.46 Carica papaya HOM05D003860 ORTHO05D004218 2.3e-06 57.8 36 61.1
Solyc11g005525.1 Solanum lycopersicum HOM05D001580 ORTHO05D001517 2.3e-06 57.8 178 25.8
Sopen11g007360 Solanum pennellii HOM05D001580 ORTHO05D001517 2.3e-06 57.8 168 27.4
Sopen11g001510 Solanum pennellii HOM05D001580 ORTHO05D001517 8.6e-06 55.8 178 25.3


User provided reference genes

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