Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 0.0e+00 1713.0 913 100.0
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 0.0e+00 1606.7 913 94.7
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 0.0e+00 1339.7 916 81.2
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 0.0e+00 1288.9 916 78.7
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 0.0e+00 1218.0 850 79.9
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 0.0e+00 1164.1 850 77.4
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 0.0e+00 1129.0 821 77.2
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 8.4e-166 588.6 1005 44.7
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 5.4e-165 585.9 950 45.7
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 2.1e-164 583.9 997 43.6
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 3.9e-163 579.7 997 43.6
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 7.9e-156 555.4 998 43.3
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 5.1e-155 552.7 992 43.1
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 4.8e-153 546.2 986 42.6
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 4.8e-153 546.2 993 42.6
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 4.5e-151 539.7 1022 42.5
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 1.0e-150 538.5 992 41.6
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 1.2e-148 531.6 983 42.8
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 3.9e-147 526.6 978 42.9
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 5.1e-147 526.2 842 46.6
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 2.8e-145 520.4 984 42.0
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 1.8e-144 517.7 995 42.1
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 2.7e-140 503.8 961 41.9
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 1.0e-139 501.9 996 42.2
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 5.1e-139 499.6 1004 39.8
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 1.1e-138 498.4 964 41.7
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 6.9e-136 489.2 994 40.9
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 2.6e-135 487.3 991 41.1
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 2.2e-134 484.2 993 39.7
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 5.0e-134 483.0 972 40.0
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 3.2e-133 480.3 925 41.4
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 7.2e-133 479.2 954 40.1
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 2.7e-132 477.2 970 39.9
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 3.6e-132 476.9 1031 38.7
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 6.1e-132 476.1 971 39.5
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 1.8e-131 474.6 1020 38.8
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 5.1e-131 473.0 1000 39.9
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 1.5e-130 471.5 1100 37.8
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 2.2e-129 467.6 970 39.8
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 3.7e-129 466.8 996 40.2
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 9.1e-128 462.2 998 40.0
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 3.5e-127 460.3 995 39.8
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 1.3e-126 458.4 994 39.1
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 4.2e-125 453.4 1004 38.6
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 7.2e-125 452.6 977 40.5
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 2.3e-123 447.6 1012 38.8
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 1.5e-122 444.9 927 38.9
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 1.3e-121 441.8 932 39.3
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 4.8e-121 439.9 964 39.3
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 6.3e-121 439.5 1002 38.3
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 1.4e-120 438.3 1013 38.7
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 1.8e-120 438.0 845 41.8
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 4.1e-120 436.8 994 39.0
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 1.3e-118 431.8 1028 38.2
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 2.2e-118 431.0 966 39.1
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 6.5e-118 429.5 925 38.9
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 3.3e-114 417.2 786 43.0
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 1.7e-113 414.8 948 38.6
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 6.3e-113 412.9 963 36.2
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 2.4e-112 411.0 1016 37.6
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 7.7e-111 406.0 940 38.5
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 5.5e-109 399.8 978 35.8
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 7.2e-109 399.4 991 37.1
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 9.4e-109 399.1 1068 36.5
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 1.2e-108 398.7 904 38.6
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 3.6e-108 397.1 796 41.5
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 3.6e-108 397.1 869 39.1
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 3.6e-108 397.1 1009 38.0
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 6.1e-108 396.4 1004 37.8
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 1.2e-106 392.1 939 37.3
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 4.4e-106 390.2 972 36.5
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 1.4e-104 385.2 988 37.7
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 1.4e-104 385.2 999 35.8
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 2.9e-102 377.5 990 35.9
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 6.6e-102 376.3 980 35.9
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 8.6e-102 375.9 875 38.6
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 7.2e-101 372.9 833 38.9
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 1.6e-100 371.7 970 37.0
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 3.6e-100 370.5 838 38.1
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 2.6e-98 364.4 963 36.0
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 5.7e-98 363.2 973 34.4
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 3.7e-97 360.5 972 34.7
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 4.1e-96 357.1 971 36.0
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 1.2e-95 355.5 983 36.1
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 1.6e-95 355.1 1049 33.0
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 5.9e-95 353.2 988 36.1
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 2.3e-94 351.3 990 35.8
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 1.5e-93 348.6 1071 35.2
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 1.9e-93 348.2 956 34.3
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 4.3e-93 347.1 1036 34.7
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 3.6e-92 344.0 845 36.9
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 3.9e-86 323.9 972 34.8
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 4.3e-85 320.5 1022 32.8
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 4.7e-84 317.0 785 35.9
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 1.2e-82 312.4 906 35.2
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 5.8e-82 310.1 1020 33.3
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 1.3e-81 308.9 926 34.2
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 6.0e-79 300.1 920 34.7
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 3.3e-77 294.3 1000 32.2
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 4.3e-77 293.9 842 34.1
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 3.6e-76 290.8 1103 31.0
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 6.8e-75 286.6 833 32.9
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 2.6e-74 284.6 956 33.4
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 3.4e-74 284.3 996 32.3
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 5.8e-74 283.5 821 33.0
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 5.6e-69 266.9 606 40.3
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 2.8e-68 264.6 897 32.4
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 3.6e-68 264.2 932 32.4
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 1.5e-58 232.3 943 30.0
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 3.1e-51 208.0 431 37.8
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 5.3e-51 207.2 258 53.5
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 7.6e-50 203.4 423 37.6
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 2.2e-49 201.8 153 69.9
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 1.6e-47 195.7 852 29.1
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 2.5e-37 161.8 158 58.9
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 2.6e-34 151.8 1072 26.2
CBR_g12012 Chara braunii HOM05D005351 ORTHO05D006542 1.7e-33 149.1 223 46.2
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 1.8e-27 129.0 1019 24.5
SMO164G0196 Selaginella moellendorffii HOM05D005351 ORTHO05D006542 2.4e-27 128.6 193 44.6
HPP92_028497 Vanilla planifolia HOM05D005351 ORTHO05D006542 2.9e-25 121.7 161 46.0
Hma1.2p1_3473F.1_g336230 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 6.1e-23 114.0 101 63.4
vmacro11082 Vaccinium macrocarpon HOM05D000009 ORTHO05D006542 2.0e-21 109.0 97 64.9
Solyc10g005860.3 Solanum lycopersicum HOM05D005351 ORTHO05D006542 5.7e-21 107.5 60 93.3
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 2.2e-20 105.5 294 38.4
Peaxi162Scf00018g00154 Petunia axillaris HOM05D005351 ORTHO05D006542 2.2e-20 105.5 60 93.3
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 6.9e-19 100.5 231 33.3
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 2.0e-18 99.0 445 29.9
CiPaw.12G140800 Carya illinoinensis HOM05D005351 ORTHO05D006542 2.9e-17 95.1 143 44.1
Dinv10361 Davidia involucrata HOM05D005351 ORTHO05D006542 1.4e-16 92.8 72 63.9
Cre09.g388430 Chlamydomonas reinhardtii HOM05D005351 ORTHO05D006542 5.1e-14 84.3 188 34.6
Oeu017995.1 Olea europaea HOM05D005351 ORTHO05D006542 4.1e-11 74.7 637 24.5
AagrBONN_evm.TU.Sc2ySwM_368.1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 8.5e-09 67.0 870 23.7
Cc00_g23250 Coffea canephora HOM05D000874 ORTHO05D001049 6.1e-07 60.8 40 62.5
HPP92_028499 Vanilla planifolia HOM05D005351 ORTHO05D006542 2.3e-06 58.9 84 51.2


User provided reference genes

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