Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003319g0010 Nicotiana tabacum HOM05D005724 ORTHO05D006636 5.3e-276 954.1 635 100.0
Nitab4.5_0000193g0130 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.0e-250 870.2 638 91.5
CAN.G219.49 Capsicum annuum HOM05D005724 ORTHO05D006636 2.9e-197 692.6 645 69.9
Peaxi162Scf00691g00055 Petunia axillaris HOM05D005724 ORTHO05D006636 5.6e-193 678.3 697 68.0
Sopen07g032510 Solanum pennellii HOM05D005724 ORTHO05D006636 1.3e-186 657.1 642 71.7
Solyc07g064350.3 Solanum lycopersicum HOM05D005724 ORTHO05D006636 2.8e-184 649.4 657 70.0
PGSC0003DMG400013918 Solanum tuberosum HOM05D005724 ORTHO05D006636 4.5e-182 642.1 644 69.7
Nitab4.5_0001290g0080 Nicotiana tabacum HOM05D005724 ORTHO05D006636 3.4e-166 589.3 636 68.6
Hma1.2p1_0023F.1_g015530 Hydrangea macrophylla HOM05D005724 ORTHO05D006636 1.5e-145 520.8 642 55.8
CSS0043370 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.1e-143 514.6 646 53.1
Oeu040430.1 Olea europaea HOM05D005724 ORTHO05D006636 3.2e-140 503.1 670 51.6
Actinidia03489 Actinidia chinensis HOM05D005724 ORTHO05D006636 4.2e-140 502.7 653 54.1
Dinv40379 Davidia involucrata HOM05D005724 ORTHO05D006636 5.5e-140 502.3 648 53.9
vmacro00813 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 6.1e-131 472.2 656 52.7
Cc10_g09550 Coffea canephora HOM05D005724 ORTHO05D006636 1.2e-129 468.0 676 52.1
Nitab4.5_0013479g0020 Nicotiana tabacum HOM05D005724 ORTHO05D006636 2.8e-128 463.4 614 58.6
TAR623G1038 Trochodendron aralioides HOM05D005724 ORTHO05D006636 8.2e-128 461.8 647 50.5
Sc16g0010460 Simmondsia chinensis HOM05D005724 ORTHO05D006636 2.4e-127 460.3 652 56.1
unitig_46.g18493 Utricularia gibba HOM05D005724 ORTHO05D006636 4.5e-126 456.1 644 47.7
TAR369G1103 Trochodendron aralioides HOM05D005724 ORTHO05D006636 2.9e-125 453.4 650 49.7
TWI12G1283 Tripterygium wilfordii HOM05D005724 ORTHO05D006636 2.6e-121 440.3 662 46.7
CiPaw.07G081600 Carya illinoinensis HOM05D005724 ORTHO05D006636 3.4e-121 439.9 654 50.0
DCAR_014109 Daucus carota HOM05D005724 ORTHO05D006636 3.7e-120 436.4 645 48.2
Migut.C01153 Erythranthe guttata HOM05D005724 ORTHO05D006636 1.8e-119 434.1 659 49.5
MSTRG.1463 Avicennia marina HOM05D005724 ORTHO05D006636 3.1e-119 433.3 615 53.2
SGA_v2.0_scaffold52G18986 Striga asiatica HOM05D005724 ORTHO05D006636 4.1e-119 433.0 653 47.6
CSS0028855 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 5.4e-119 432.6 519 53.0
RhsimUnG0095000 Rhododendron simsii HOM05D005724 ORTHO05D006636 2.3e-117 427.2 649 51.8
SalBow2G0175 Salvia bowleyana HOM05D005724 ORTHO05D006636 1.2e-115 421.4 659 52.8
PGR031G2108 Punica granatum HOM05D005724 ORTHO05D006636 1.8e-114 417.5 693 46.9
Aqoxy1G00698 Aquilegia oxysepala HOM05D005724 ORTHO05D006636 1.1e-111 408.3 656 46.5
CsaV3_4G029120 Cucumis sativus L. HOM05D005724 ORTHO05D006636 7.0e-111 405.6 648 49.2
MBI13_g30854_MAGBIO Magnolia biondii HOM05D005724 ORTHO05D006636 2.7e-110 403.7 692 46.5
Haze_04583 Corylus avellana HOM05D005724 ORTHO05D006636 3.5e-110 403.3 663 50.8
Cfa006250 Carpinus fangiana HOM05D005724 ORTHO05D006636 5.9e-110 402.5 660 45.6
Sed0018672 Sechium edule HOM05D005724 ORTHO05D006636 2.3e-109 400.6 667 49.6
Sabra01G0096300 Salix brachista HOM05D005724 ORTHO05D006636 2.9e-109 400.2 637 46.2
Lalb_Chr18g0058031 Lupinus albus HOM05D005724 ORTHO05D006636 4.3e-108 396.4 656 45.0
ATR0307G120 Amborella trichopoda HOM05D005724 ORTHO05D006636 1.4e-106 391.3 645 43.3
Manes.13G004400 Manihot esculenta HOM05D005724 ORTHO05D006636 3.0e-106 390.2 669 46.3
Oeu026139.1 Olea europaea HOM05D005724 ORTHO05D006636 4.0e-106 389.8 534 53.0
Ca_00849_v3 Cicer arietinum L. HOM05D005724 ORTHO05D006636 2.0e-105 387.5 593 42.5
Ciclev10011241m.g Citrus clementina HOM05D005724 ORTHO05D006636 2.0e-105 387.5 671 44.7
HanXRQChr16g0529541 Helianthus annuus HOM05D005724 ORTHO05D006636 4.4e-105 386.3 659 49.9
Ah.06g195410 Amaranthus hybridus HOM05D005724 ORTHO05D006636 7.5e-105 385.6 645 51.2
Lj6g0014403 Lotus japonicus HOM05D005724 ORTHO05D006636 1.7e-104 384.4 704 41.9
VMungo0540G1901 Vigna mungo HOM05D005724 ORTHO05D006636 4.9e-104 382.9 674 41.8
Glyma.15G131100 Glycine max HOM05D005724 ORTHO05D006636 8.3e-104 382.1 689 44.8
Atru.chr12.1744 Acer truncatum HOM05D005724 ORTHO05D006636 1.1e-103 381.7 698 40.8
CANSAT35G0128 Cannabis sativa HOM05D005724 ORTHO05D006636 1.1e-103 381.7 662 50.0
ECA234G3960 Erigeron canadensis HOM05D005724 ORTHO05D006636 5.4e-103 379.4 668 50.6
Eucgr.H01410 Eucalyptus grandis HOM05D005724 ORTHO05D006636 5.4e-103 379.4 672 44.0
Psat0s1379g0200 Pisum sativum HOM05D005724 ORTHO05D006636 9.2e-103 378.6 616 41.1
Lsat_1_v5_gn_4_15540 Lactuca sativa HOM05D005724 ORTHO05D006636 1.2e-102 378.3 648 45.7
Glyma.09G025000 Glycine max HOM05D005724 ORTHO05D006636 1.3e-101 374.8 687 45.3
Potri.001G125200 Populus trichocarpa HOM05D005724 ORTHO05D006636 3.0e-101 373.6 635 47.9
arahy.Tifrunner.gnm1.ann1.GIZW0B Arachis hypogaea HOM05D005724 ORTHO05D006636 8.0e-99 365.5 679 44.0
arahy.Tifrunner.gnm1.ann1.EBNE7V Arachis hypogaea HOM05D005724 ORTHO05D006636 3.1e-98 363.6 680 43.8
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 6.8e-98 362.5 660 46.1
Thecc.05G190100 Theobroma cacao HOM05D005724 ORTHO05D006636 6.8e-98 362.5 692 46.0
Phvul.006G127600 Phaseolus vulgaris HOM05D005724 ORTHO05D006636 2.6e-97 360.5 686 41.3
Aa31LG8G10800 Aethionema arabicum HOM05D005724 ORTHO05D006636 3.4e-97 360.1 565 52.4
Gorai.004G263700 Gossypium raimondii HOM05D005724 ORTHO05D006636 6.4e-96 355.9 680 46.5
ClCG09G009940 Citrullus lanatus HOM05D005724 ORTHO05D006636 1.1e-95 355.1 649 49.8
RcHm_v2.0_Chr3g0447651 Rosa chinensis HOM05D005724 ORTHO05D006636 4.1e-95 353.2 711 44.6
COL.COLO4_36609 Corchorus olitorius HOM05D005724 ORTHO05D006636 1.6e-94 351.3 658 43.5
THA.LOC104821618 Tarenaya hassleriana HOM05D005724 ORTHO05D006636 3.5e-94 350.1 594 49.8
Prupe.6G362700 Prunus persica HOM05D005724 ORTHO05D006636 6.0e-94 349.4 671 48.9
Medtr2g030390 Medicago truncatula HOM05D005724 ORTHO05D006636 7.8e-94 349.0 676 42.0
AL3G39270 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 5.1e-93 346.3 578 52.4
MD12G1263700 Malus domestica HOM05D005724 ORTHO05D006636 4.3e-92 343.2 690 46.7
Nn2g11375 Nelumbo nucifera HOM05D005724 ORTHO05D006636 5.6e-92 342.8 541 50.1
QL03p046485 Quercus lobata HOM05D005724 ORTHO05D006636 7.3e-92 342.4 654 47.9
Gohir.D08G247200 Gossypium hirsutum HOM05D005724 ORTHO05D006636 3.6e-91 340.1 688 44.8
Carub.0003s2445 Capsella rubella HOM05D005724 ORTHO05D006636 5.2e-90 336.3 634 46.7
Gohir.A08G226800 Gossypium hirsutum HOM05D005724 ORTHO05D006636 6.8e-90 335.9 691 44.6
Nitab4.5_0005621g0050 Nicotiana tabacum HOM05D005724 ORTHO05D006636 3.7e-88 330.1 332 65.4
FvH4_6g00350 Fragaria vesca HOM05D005724 ORTHO05D006636 1.1e-87 328.6 690 48.1
TPR.G26364 Trifolium pratense HOM05D005724 ORTHO05D006636 1.1e-87 328.6 623 43.5
QL10p055615 Quercus lobata HOM05D005724 ORTHO05D006636 7.1e-87 325.9 649 47.1
QL10p055704 Quercus lobata HOM05D005724 ORTHO05D006636 1.7e-85 321.2 654 46.6
AL8G20560 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 3.0e-85 320.5 630 50.2
vmacro22819 Vaccinium macrocarpon HOM05D005724 ORTHO05D006636 3.0e-85 320.5 653 43.5
Duzib168G0454 Durio zibethinus HOM05D005724 ORTHO05D006636 1.1e-84 318.5 681 43.9
AT3G24080 Arabidopsis thaliana HOM05D005724 ORTHO05D006636 9.5e-84 315.5 580 46.9
MELO3C000397.2 Cucumis melo HOM05D005724 ORTHO05D006636 8.1e-83 312.4 565 47.3
Lj2C388T1 Lonicera japonica HOM05D005724 ORTHO05D006636 1.1e-82 312.0 645 40.2
Peaxi162Scf00916g00115 Petunia axillaris HOM05D005724 ORTHO05D006636 1.8e-82 311.2 365 65.5
PSO133G0013 Papaver somniferum HOM05D005724 ORTHO05D006636 1.5e-81 308.1 659 47.6
CARHR100150 Cardamine hirsuta HOM05D005724 ORTHO05D006636 6.4e-80 302.8 554 49.6
Os05g0490000 Oryza sativa ssp. japonica HOM05D005724 ORTHO05D006636 9.2e-79 298.9 583 43.7
PSO541G5859 Papaver somniferum HOM05D005724 ORTHO05D006636 6.0e-78 296.2 659 44.2
CDE09G0189 Ceratophyllum demersum HOM05D005724 ORTHO05D006636 1.9e-76 291.2 511 48.9
CSS0001117 Camellia sinensis var. sinensis HOM05D005724 ORTHO05D006636 1.6e-70 271.6 312 53.5
HPP92_010851 Vanilla planifolia HOM05D005724 ORTHO05D006636 3.0e-69 267.3 443 44.7
Zm00001eb227770 Zea mays HOM05D005724 ORTHO05D006636 4.8e-67 260.0 661 42.7
AUR62041171 Chenopodium quinoa HOM05D005724 ORTHO05D006636 5.3e-66 256.5 435 43.9
SHI13708 Sapria himalayana HOM05D005724 ORTHO05D006636 2.0e-65 254.6 657 34.9
SEGI_23235 Sequoiadendron giganteum HOM05D005724 ORTHO05D006636 4.5e-65 253.4 657 40.8
Sp3g21860 Schrenkiella parvula HOM05D005724 ORTHO05D006636 9.9e-65 252.3 630 47.5
AagrBONN_evm.TU.Sc2ySwM_228.2542 Anthoceros agrestis HOM05D005724 ORTHO05D006636 2.2e-64 251.1 677 34.9
AUR62029295 Chenopodium quinoa HOM05D005724 ORTHO05D006636 3.9e-61 240.4 423 43.7
BolC7t41765H Brassica oleracea HOM05D005724 ORTHO05D006636 6.7e-61 239.6 640 41.9
Pp3c2_10220 Physcomitrium patens HOM05D005724 ORTHO05D006636 1.5e-60 238.4 680 35.0
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.8e-58 231.5 441 42.2
Mapoly0029s0120 Marchantia polymorpha HOM05D005724 ORTHO05D006636 5.3e-58 229.9 676 34.2
BcaB06g26592 Brassica carinata HOM05D005724 ORTHO05D006636 4.5e-57 226.9 630 41.3
BcaC06g35627 Brassica carinata HOM05D005724 ORTHO05D006636 5.8e-57 226.5 641 41.5
C07p12790 Brassica napus HOM05D005724 ORTHO05D006636 5.8e-57 226.5 641 41.3
Mapoly0032s0003 Marchantia polymorpha HOM05D005724 ORTHO05D006636 9.9e-57 225.7 677 34.7
BraA07t28608Z Brassica rapa HOM05D005724 ORTHO05D006636 1.1e-55 222.2 641 41.2
A07p08250 Brassica napus HOM05D005724 ORTHO05D006636 1.9e-55 221.5 641 40.9
Dinv27342 Davidia involucrata HOM05D005724 ORTHO05D006636 1.9e-44 184.9 333 45.6
Glyma.13G144202 Glycine max HOM05D005724 ORTHO05D006636 2.6e-41 174.5 279 43.7
Dinv27343 Davidia involucrata HOM05D005724 ORTHO05D006636 1.7e-40 171.8 190 51.6
Peaxi162Scf00916g00131 Petunia axillaris HOM05D005724 ORTHO05D006636 1.1e-39 169.1 136 72.1
SMO118G0180 Selaginella moellendorffii HOM05D005724 ORTHO05D006636 3.7e-35 154.1 657 36.1
Cre10.g441450 Chlamydomonas reinhardtii HOM05D005724 ORTHO05D006636 2.0e-33 148.3 661 33.6
MCO14G354 Micromonas commoda HOM05D005724 ORTHO05D006636 3.2e-31 141.0 573 36.6
Nitab4.5_0005621g0090 Nicotiana tabacum HOM05D005724 ORTHO05D006636 6.7e-29 133.3 105 82.9
Cpa.g.sc48.98 Carica papaya HOM05D005724 ORTHO05D006636 4.4e-28 130.6 235 48.9
PRCOL_00003643 Prasinoderma coloniale HOM05D005724 ORTHO05D006636 6.3e-27 126.7 628 27.4
MSTRG.22873 Avicennia marina HOM05D005724 ORTHO05D006636 1.8e-26 125.2 169 48.5
Psat1g166960 Pisum sativum HOM05D005724 ORTHO05D006636 1.9e-23 115.2 308 33.4
CBR_g46717 Chara braunii HOM05D005724 ORTHO05D006636 5.5e-23 113.6 644 30.1
MD04G1246400 Malus domestica HOM05D005724 ORTHO05D006636 6.1e-22 110.2 113 54.9
AL8G20410 Arabidopsis lyrata HOM05D005724 ORTHO05D006636 5.2e-21 107.1 104 55.8
MELO3C003738.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.5e-15 89.0 105 58.1
MELO3C017820.2 Cucumis melo HOM05D005724 ORTHO05D006636 1.5e-15 89.0 105 57.1
Nitab4.5_0005621g0100 Nicotiana tabacum HOM05D005724 ORTHO05D006636 1.9e-15 88.6 109 53.2
PSO339G2657 Papaver somniferum HOM05D005724 ORTHO05D006636 6.1e-14 83.6 168 45.2
AagrBONN_evm.TU.Sc2ySwM_344.5238 Anthoceros agrestis HOM05D005724 ORTHO05D006636 1.8e-10 72.0 556 26.4
Cfa025790 Carpinus fangiana HOM05D005724 ORTHO05D006636 8.5e-08 63.2 583 26.8


User provided reference genes

Program Settings