Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 0.0e+00 1189.1 557 100.0
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 0.0e+00 1140.2 578 93.3
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 5.3e-288 993.8 563 84.4
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 2.2e-286 988.4 609 79.1
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 1.3e-283 979.2 609 78.3
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 9.7e-266 919.8 591 73.9
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 1.3e-262 909.4 610 71.8
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 6.3e-257 890.6 602 69.4
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 5.3e-256 887.5 615 70.1
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 5.5e-253 877.5 587 71.6
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 6.8e-251 870.5 613 67.5
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 8.8e-251 870.2 600 69.0
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 1.2e-250 869.8 588 69.9
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 2.0e-250 869.0 614 68.2
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 2.6e-250 868.6 605 69.1
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 5.7e-250 867.5 602 68.8
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 3.7e-249 864.8 587 70.2
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 2.4e-248 862.1 600 68.8
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 7.0e-248 860.5 609 68.0
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 9.1e-248 860.1 603 68.8
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 1.6e-247 859.4 608 67.8
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 1.6e-247 859.4 587 69.5
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 1.6e-247 859.4 615 68.1
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 3.5e-247 858.2 603 68.3
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 3.5e-247 858.2 606 68.0
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 5.9e-247 857.4 609 67.8
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 2.9e-246 855.1 625 66.9
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 3.8e-246 854.7 611 69.1
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 8.5e-246 853.6 605 67.9
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 8.5e-246 853.6 609 67.5
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 1.5e-245 852.8 600 68.3
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 2.5e-245 852.0 610 67.5
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 2.5e-245 852.0 622 66.4
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 2.5e-245 852.0 603 67.8
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 4.2e-245 851.3 600 67.5
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 7.2e-245 850.5 597 68.2
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 7.2e-245 850.5 601 68.2
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 1.6e-244 849.4 602 67.3
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 2.1e-244 849.0 577 69.2
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 3.6e-244 848.2 606 67.5
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 4.7e-244 847.8 598 68.4
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 6.1e-244 847.4 602 68.1
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 8.0e-244 847.0 601 68.1
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 1.8e-243 845.9 598 68.2
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 5.2e-243 844.3 587 68.3
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 6.8e-243 844.0 596 66.6
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 3.4e-242 841.6 605 67.3
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.7e-241 839.3 601 66.7
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 1.7e-241 839.3 607 66.9
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 1.7e-241 839.3 579 68.4
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 3.7e-241 838.2 607 67.4
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 6.3e-241 837.4 604 66.9
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 8.3e-241 837.0 601 66.6
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 1.1e-240 836.6 605 67.3
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 9.1e-240 833.6 579 68.4
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 1.2e-239 833.2 566 74.2
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 3.8e-238 828.2 588 67.7
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 1.2e-236 823.2 627 63.6
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 4.4e-234 814.7 587 66.1
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 5.7e-234 814.3 588 66.0
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 5.7e-234 814.3 588 66.7
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 1.7e-233 812.8 588 65.8
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 1.7e-233 812.8 588 65.8
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 9.2e-232 807.0 608 64.1
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 2.0e-231 805.8 587 65.1
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 7.8e-231 803.9 610 63.6
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 1.0e-230 803.5 609 63.7
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 1.0e-230 803.5 609 63.7
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 2.3e-230 802.4 610 63.4
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 1.1e-229 800.0 750 55.5
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 1.6e-228 796.2 812 51.4
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 2.1e-228 795.8 587 65.4
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 6.1e-228 794.3 610 63.6
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 2.3e-227 792.3 587 65.2
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 3.1e-227 792.0 587 64.7
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 2.0e-226 789.3 591 65.7
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 2.6e-226 788.9 573 65.4
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 9.8e-226 786.9 609 63.7
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 1.7e-225 786.2 616 61.4
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 1.7e-225 786.2 609 62.6
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 6.4e-225 784.3 605 63.8
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 3.2e-224 781.9 648 59.9
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 9.2e-224 780.4 588 63.1
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.2e-223 780.0 710 55.9
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 3.5e-223 778.5 564 67.6
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 2.5e-221 772.3 479 75.6
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 1.2e-218 763.5 527 69.1
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 2.0e-218 762.7 596 62.9
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 1.3e-217 760.0 584 64.0
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 2.5e-213 745.7 541 67.3
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 2.0e-210 736.1 551 64.2
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 2.6e-210 735.7 535 66.9
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 5.8e-210 734.6 638 58.2
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 4.9e-209 731.5 638 57.8
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 4.9e-209 731.5 583 62.3
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 6.6e-206 721.1 536 65.9
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 2.7e-199 699.1 520 64.0
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 2.4e-187 659.4 586 57.0
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 7.9e-183 644.4 596 55.5
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 2.5e-176 622.9 615 51.4
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 2.7e-175 619.4 359 78.3
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 1.1e-173 614.0 585 52.0
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 3.2e-168 595.9 467 61.2
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 6.1e-167 591.7 434 65.0
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 3.4e-162 575.9 582 49.7
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 5.3e-155 552.0 528 52.7
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 3.8e-153 545.8 585 48.2
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 2.4e-147 526.6 426 61.3
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 2.3e-134 483.4 410 58.8
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 7.5e-117 425.2 224 83.9
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 1.3e-116 424.5 448 51.6
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 1.3e-113 414.5 352 59.9
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 4.1e-99 366.3 388 50.5
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 1.2e-77 295.0 179 76.5
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 8.7e-73 278.9 166 75.9
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 7.6e-61 239.2 130 83.1
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 4.5e-53 213.4 244 48.8
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 6.5e-52 209.5 155 63.2
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 6.1e-50 203.0 160 58.1
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 4.1e-46 190.3 264 42.0
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 7.7e-45 186.0 100 84.0
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 7.9e-42 176.0 130 69.2
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 6.7e-41 172.9 121 63.6
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 2.8e-31 141.0 132 54.5
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 2.6e-24 117.9 81 71.6
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 2.6e-24 117.9 81 71.6
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 7.5e-24 116.3 117 51.3
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 3.7e-23 114.0 77 70.1
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.1e-19 102.4 56 78.6
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 7.2e-19 99.8 78 61.5
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.6e-18 98.6 56 73.2
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.6e-18 98.6 56 73.2
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.1e-18 98.2 56 76.8
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.1e-18 98.2 56 76.8
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.0e-17 95.9 78 60.3
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 1.3e-15 89.0 44 81.8
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 6.3e-15 86.7 73 58.9
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 6.3e-15 86.7 73 58.9
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 6.3e-15 86.7 65 66.2
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 5.9e-13 80.1 57 66.7
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 5.0e-12 77.0 46 71.7
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 4.0e-09 67.4 32 78.1
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 6.3e-07 60.1 40 65.0
Peaxi162Scf00415g00415 Petunia axillaris HOM05D004940 ORTHO05D022117 7.0e-06 56.6 44 61.4


User provided reference genes

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