Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003290g0070 Nicotiana tabacum HOM05D004397 ORTHO05D005271 1.8e-37 158.7 76 100.0
Nitab4.5_0000678g0090 Nicotiana tabacum HOM05D004397 ORTHO05D005271 5.0e-24 114.0 88 64.8
Nitab4.5_0003501g0040 Nicotiana tabacum HOM05D004397 ORTHO05D005271 1.4e-21 105.9 80 66.2
Nitab4.5_0006802g0080 Nicotiana tabacum HOM05D004397 ORTHO05D005271 1.4e-21 105.9 81 66.7
Nitab4.5_0014148g0010 Nicotiana tabacum HOM05D004397 ORTHO05D005271 5.2e-21 104.0 80 66.2
Nitab4.5_0003603g0020 Nicotiana tabacum HOM05D004397 ORTHO05D005271 2.6e-20 101.7 81 64.2
Nitab4.5_0002335g0060 Nicotiana tabacum HOM05D004397 ORTHO05D005271 2.9e-19 98.2 86 59.3
Nitab4.5_0003508g0010 Nicotiana tabacum HOM05D004397 ORTHO05D005271 3.7e-19 97.8 86 58.1
Nitab4.5_0006174g0030 Nicotiana tabacum HOM05D004397 ORTHO05D005271 3.2e-18 94.7 70 70.0
CiPaw.09G097700 Carya illinoinensis HOM05D004397 ORTHO05D005271 1.6e-17 92.4 86 55.8
CiPaw.10G074300 Carya illinoinensis HOM05D004397 ORTHO05D005271 2.1e-17 92.0 86 54.7
Cpa.g.sc152.55 Carica papaya HOM05D004397 ORTHO05D005271 3.5e-17 91.3 86 54.7
Peaxi162Scf01073g00117 Petunia axillaris HOM05D004397 ORTHO05D005271 3.5e-17 91.3 86 55.8
SGA_v2.0_scaffold543G52819 Striga asiatica HOM05D004397 ORTHO05D005271 7.8e-17 90.1 86 54.7
MSTRG.1068 Avicennia marina HOM05D004397 ORTHO05D005271 1.0e-16 89.7 86 53.5
Cfa000163 Carpinus fangiana HOM05D004397 ORTHO05D005271 1.0e-16 89.7 86 54.7
Haze_06856 Corylus avellana HOM05D004397 ORTHO05D005271 1.0e-16 89.7 86 54.7
Dinv12378 Davidia involucrata HOM05D004397 ORTHO05D005271 1.0e-16 89.7 86 54.7
Thecc.06G227900 Theobroma cacao HOM05D004397 ORTHO05D005271 1.0e-16 89.7 86 54.7
GSVIVG01004810001 Vitis vinifera HOM05D004397 ORTHO05D005271 1.0e-16 89.7 86 54.7
Solyc12g088730.2 Solanum lycopersicum HOM05D004397 ORTHO05D005271 1.3e-16 89.4 86 54.7
Sopen12g030630 Solanum pennellii HOM05D004397 ORTHO05D005271 1.3e-16 89.4 86 54.7
PGSC0003DMG400015407 Solanum tuberosum HOM05D004397 ORTHO05D005271 1.3e-16 89.4 86 54.7
QL03p004896 Quercus lobata HOM05D004397 ORTHO05D005271 1.7e-16 89.0 86 53.5
QL05p071977 Quercus lobata HOM05D004397 ORTHO05D005271 1.7e-16 89.0 86 53.5
Duzib192G0217 Durio zibethinus HOM05D004397 ORTHO05D005271 3.0e-16 88.2 86 53.5
Hma1.2p1_0226F.1_g095780 Hydrangea macrophylla HOM05D004397 ORTHO05D005271 3.0e-16 88.2 86 54.7
Nn1g07269 Nelumbo nucifera HOM05D004397 ORTHO05D005271 3.9e-16 87.8 86 51.2
Lj4A769T44 Lonicera japonica HOM05D004397 ORTHO05D005271 5.1e-16 87.4 86 53.5
Prupe.2G035900 Prunus persica HOM05D004397 ORTHO05D005271 6.6e-16 87.0 86 52.3
arahy.Tifrunner.gnm1.ann1.K9NX2S Arachis hypogaea HOM05D004397 ORTHO05D005271 1.1e-15 86.3 86 52.3
Oeu023826.3 Olea europaea HOM05D004397 ORTHO05D005271 1.1e-15 86.3 86 52.3
Potri.004G004800 Populus trichocarpa HOM05D004397 ORTHO05D005271 1.1e-15 86.3 86 53.5
Migut.N02747 Erythranthe guttata HOM05D004397 ORTHO05D005271 1.5e-15 85.9 86 53.5
Sed0027185 Sechium edule HOM05D004397 ORTHO05D005271 1.5e-15 85.9 86 53.5
THA.LOC104809478 Tarenaya hassleriana HOM05D004397 ORTHO05D005271 1.5e-15 85.9 86 52.3
CSS0021903 Camellia sinensis var. sinensis HOM05D004397 ORTHO05D005271 1.9e-15 85.5 86 53.5
CSS0044102 Camellia sinensis var. sinensis HOM05D004397 ORTHO05D005271 1.9e-15 85.5 86 53.5
Ca_00691_v3 Cicer arietinum L. HOM05D004397 ORTHO05D005271 1.9e-15 85.5 83 53.0
CsaV3_6G048740 Cucumis sativus L. HOM05D004397 ORTHO05D005271 1.9e-15 85.5 86 51.2
Migut.L00082 Erythranthe guttata HOM05D004397 ORTHO05D005271 1.9e-15 85.5 86 53.5
HanXRQChr01g0014371 Helianthus annuus HOM05D004397 ORTHO05D005271 1.9e-15 85.5 86 53.5
Sed0005973 Sechium edule HOM05D004397 ORTHO05D005271 1.9e-15 85.5 86 52.3
Cc10_g04670 Coffea canephora HOM05D004397 ORTHO05D005271 3.3e-15 84.7 86 53.5
Medtr3g107920 Medicago truncatula HOM05D004397 ORTHO05D005271 3.3e-15 84.7 86 51.2
PGR004G1068 Punica granatum HOM05D004397 ORTHO05D005271 3.3e-15 84.7 86 53.5
TAR626G0623 Trochodendron aralioides HOM05D004397 ORTHO05D005271 3.3e-15 84.7 86 51.2
Aa31LG8G17020 Aethionema arabicum HOM05D004397 ORTHO05D005271 4.3e-15 84.3 86 52.3
BcaB08g34896 Brassica carinata HOM05D004397 ORTHO05D005271 4.3e-15 84.3 86 52.3
BcaC07g41228 Brassica carinata HOM05D004397 ORTHO05D005271 4.3e-15 84.3 86 52.3
A09p59050 Brassica napus HOM05D004397 ORTHO05D005271 4.3e-15 84.3 86 52.3
C08p42330 Brassica napus HOM05D004397 ORTHO05D005271 4.3e-15 84.3 86 52.3
BolC8t51793H Brassica oleracea HOM05D004397 ORTHO05D005271 4.3e-15 84.3 86 52.3
BraA09t41289Z Brassica rapa HOM05D004397 ORTHO05D005271 4.3e-15 84.3 86 52.3
Thhalv10002043m.g Eutrema salsugineum HOM05D004397 ORTHO05D005271 4.3e-15 84.3 86 52.3
Sp3g33370 Schrenkiella parvula HOM05D004397 ORTHO05D005271 4.3e-15 84.3 86 52.3
TPR.G34683 Trifolium pratense HOM05D004397 ORTHO05D005271 4.3e-15 84.3 86 51.2
MSTRG.25075 Avicennia marina HOM05D004397 ORTHO05D005271 5.6e-15 84.0 86 51.2
BcaC06g36686 Brassica carinata HOM05D004397 ORTHO05D005271 5.6e-15 84.0 86 51.2
A07p00590 Brassica napus HOM05D004397 ORTHO05D005271 5.6e-15 84.0 86 51.2
C07p01050 Brassica napus HOM05D004397 ORTHO05D005271 5.6e-15 84.0 86 51.2
BolC7t40544H Brassica oleracea HOM05D004397 ORTHO05D005271 5.6e-15 84.0 86 51.2
BraA07t27855Z Brassica rapa HOM05D004397 ORTHO05D005271 5.6e-15 84.0 86 51.2
COL.COLO4_31830 Corchorus olitorius HOM05D004397 ORTHO05D005271 5.6e-15 84.0 86 52.3
Gohir.A05G173000 Gossypium hirsutum HOM05D004397 ORTHO05D005271 5.6e-15 84.0 86 48.8
Gohir.A06G150933 Gossypium hirsutum HOM05D004397 ORTHO05D005271 5.6e-15 84.0 79 51.9
Gohir.D05G176000 Gossypium hirsutum HOM05D004397 ORTHO05D005271 5.6e-15 84.0 86 48.8
Gorai.009G181400 Gossypium raimondii HOM05D004397 ORTHO05D005271 5.6e-15 84.0 86 48.8
FvH4_3g01410 Fragaria vesca HOM05D004397 ORTHO05D005271 7.3e-15 83.6 86 51.2
FAN21G0257 Fragaria x ananassa HOM05D004397 ORTHO05D005271 7.3e-15 83.6 86 51.2
FAN25G3034 Fragaria x ananassa HOM05D004397 ORTHO05D005271 7.3e-15 83.6 86 51.2
Aqoxy1G03506 Aquilegia oxysepala HOM05D004397 ORTHO05D005271 9.5e-15 83.2 86 48.8
MD05G1352400 Malus domestica HOM05D004397 ORTHO05D005271 9.5e-15 83.2 86 52.3
MD10G1326400 Malus domestica HOM05D004397 ORTHO05D005271 9.5e-15 83.2 86 52.3
Atru.chr10.2278 Acer truncatum HOM05D004397 ORTHO05D005271 1.2e-14 82.8 86 52.3
AT2G20060 Arabidopsis thaliana HOM05D004397 ORTHO05D005271 1.2e-14 82.8 86 51.2
Manes.16G003100 Manihot esculenta HOM05D004397 ORTHO05D005271 1.2e-14 82.8 86 50.0
Sabra04G0002500 Salix brachista HOM05D004397 ORTHO05D005271 1.2e-14 82.8 86 52.3
THA.LOC104823539 Tarenaya hassleriana HOM05D004397 ORTHO05D005271 1.2e-14 82.8 86 51.2
TAR629G1518 Trochodendron aralioides HOM05D004397 ORTHO05D005271 1.2e-14 82.8 86 50.0
Phvul.006G146000 Phaseolus vulgaris HOM05D004397 ORTHO05D005271 1.6e-14 82.4 86 50.0
Rhsim04G0075400 Rhododendron simsii HOM05D004397 ORTHO05D005271 1.6e-14 82.4 86 48.8
Carub.0003s3434 Capsella rubella HOM05D004397 ORTHO05D005271 2.1e-14 82.0 86 51.2
Peaxi162Scf01027g00012 Petunia axillaris HOM05D004397 ORTHO05D005271 2.1e-14 82.0 92 47.8
RcHm_v2.0_Chr5g0002131 Rosa chinensis HOM05D004397 ORTHO05D005271 2.1e-14 82.0 86 50.0
SalBow7G1927 Salvia bowleyana HOM05D004397 ORTHO05D005271 2.1e-14 82.0 86 51.2
VMungo0540G2306 Vigna mungo HOM05D004397 ORTHO05D005271 2.1e-14 82.0 86 50.0
DCAR_019438 Daucus carota HOM05D004397 ORTHO05D005271 3.6e-14 81.3 86 50.0
Glyma.09G007300 Glycine max HOM05D004397 ORTHO05D005271 3.6e-14 81.3 86 48.8
PSO063G2973 Papaver somniferum HOM05D004397 ORTHO05D005271 3.6e-14 81.3 86 48.8
PSO782G1961 Papaver somniferum HOM05D004397 ORTHO05D005271 3.6e-14 81.3 86 48.8
Sc16g0006660 Simmondsia chinensis HOM05D004397 ORTHO05D005271 3.6e-14 81.3 86 50.0
AL3G48030 Arabidopsis lyrata HOM05D004397 ORTHO05D005271 4.7e-14 80.9 86 50.0
Phvul.010G046600 Phaseolus vulgaris HOM05D004397 ORTHO05D005271 4.7e-14 80.9 86 48.8
unitig_37.g12949 Utricularia gibba HOM05D004397 ORTHO05D005271 4.7e-14 80.9 86 50.0
ATR0307G084 Amborella trichopoda HOM05D004397 ORTHO05D005271 6.2e-14 80.5 86 48.8
CARHR110570 Cardamine hirsuta HOM05D004397 ORTHO05D005271 6.2e-14 80.5 86 50.0
Psat5g077520 Pisum sativum HOM05D004397 ORTHO05D005271 6.2e-14 80.5 86 48.8
DCAR_002834 Daucus carota HOM05D004397 ORTHO05D005271 8.1e-14 80.1 86 48.8
CDE03G0208 Ceratophyllum demersum HOM05D004397 ORTHO05D005271 1.1e-13 79.7 86 47.7
CDE06G0724 Ceratophyllum demersum HOM05D004397 ORTHO05D005271 1.1e-13 79.7 86 47.7
Glyma.15G111700 Glycine max HOM05D004397 ORTHO05D005271 1.1e-13 79.7 86 47.7
Lalb_Chr20g0118941 Lupinus albus HOM05D004397 ORTHO05D005271 1.1e-13 79.7 86 48.8
MBI05_g10534_MAGBIO Magnolia biondii HOM05D004397 ORTHO05D005271 1.1e-13 79.7 86 50.0
Os11g0585700 Oryza sativa ssp. japonica HOM05D004397 ORTHO05D005271 1.4e-13 79.3 86 48.8
Hund00398 Selenicereus undatus HOM05D004397 ORTHO05D005271 1.4e-13 79.3 86 50.0
Zm00001eb061360 Zea mays HOM05D004397 ORTHO05D005271 1.4e-13 79.3 86 48.8
ECA236G1813 Erigeron canadensis HOM05D004397 ORTHO05D005271 3.1e-13 78.2 86 48.8
ClCG01G021700 Citrullus lanatus HOM05D004397 ORTHO05D005271 4.0e-13 77.8 82 50.0
Eucgr.G00454 Eucalyptus grandis HOM05D004397 ORTHO05D005271 5.2e-13 77.4 86 47.7
Lsat_1_v5_gn_4_51441 Lactuca sativa HOM05D004397 ORTHO05D005271 6.8e-13 77.0 86 48.8
MBI05_g23392_MAGBIO Magnolia biondii HOM05D004397 ORTHO05D005271 8.9e-13 76.6 84 48.8
vmacro09207 Vaccinium macrocarpon HOM05D004397 ORTHO05D005271 8.9e-13 76.6 89 46.1
TWI38G0690 Tripterygium wilfordii HOM05D004397 ORTHO05D005271 1.2e-12 76.3 86 47.7
TWI63G0777 Tripterygium wilfordii HOM05D004397 ORTHO05D005271 1.2e-12 76.3 86 47.7
AUR62008935 Chenopodium quinoa HOM05D004397 ORTHO05D005271 2.0e-12 75.5 83 49.4
EL10Ac7g17869 Beta vulgaris HOM05D004397 ORTHO05D005271 4.4e-12 74.3 86 46.5
Lj6g0022899 Lotus japonicus HOM05D004397 ORTHO05D005271 1.3e-11 72.8 78 48.7
HPP92_018530 Vanilla planifolia HOM05D004397 ORTHO05D005271 2.2e-11 72.0 86 47.7
Ah.08g214470 Amaranthus hybridus HOM05D004397 ORTHO05D005271 2.9e-11 71.6 86 44.2
SHI04147 Sapria himalayana HOM05D004397 ORTHO05D005271 4.1e-10 67.8 86 43.0
BcaB03g16800 Brassica carinata HOM05D004397 ORTHO05D005271 7.1e-10 67.0 72 48.6
MELO3C007416.2 Cucumis melo HOM05D004397 ORTHO05D005271 3.5e-09 64.7 40 72.5
Nitab4.5_0002335g0080 Nicotiana tabacum HOM05D004397 ORTHO05D005271 3.5e-09 64.7 73 50.7
Nitab4.5_0004376g0020 Nicotiana tabacum HOM05D004397 ORTHO05D005271 7.8e-09 63.5 66 51.5
SGA_v2.0_scaffold404G51008 Striga asiatica HOM05D004397 ORTHO05D005271 1.0e-08 63.2 38 73.7
Pp3c13_15330 Physcomitrium patens HOM05D004397 ORTHO05D005271 3.9e-08 61.2 86 39.5
CBR_g40797 Chara braunii HOM05D004397 ORTHO05D005271 8.7e-08 60.1 86 38.4
CAN.G1194.11 Capsicum annuum HOM05D004397 ORTHO05D005271 1.1e-07 59.7 66 48.5
Mapoly0162s0019 Marchantia polymorpha HOM05D004397 ORTHO05D005271 3.3e-07 58.2 86 40.7
Lsat_1_v5_gn_7_66500 Lactuca sativa HOM05D004397 ORTHO05D005271 5.6e-07 57.4 38 68.4
Aa31LG4G11630 Aethionema arabicum HOM05D008081 ORTHO05D010223 7.3e-07 57.0 41 68.3
Oeu012435.1 Olea europaea HOM05D004397 ORTHO05D005271 9.6e-07 56.6 66 47.0
SMO116G0021 Selaginella moellendorffii HOM05D004397 ORTHO05D005271 2.8e-06 55.1 55 45.5
Actinidia22115 Actinidia chinensis HOM05D004397 ORTHO05D005271 3.6e-06 54.7 66 45.5
AagrBONN_evm.TU.Sc2ySwM_228.2975 Anthoceros agrestis HOM05D004397 ORTHO05D005271 3.6e-06 54.7 86 41.9
AUR62001111 Chenopodium quinoa HOM05D004397 ORTHO05D005271 4.7e-06 54.3 68 44.1


User provided reference genes

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