Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 3.4e-46 188.0 93 100.0
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 3.6e-40 167.9 92 90.2
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 2.5e-33 145.2 87 83.9
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 1.6e-24 115.9 69 84.1
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 8.1e-24 113.6 67 79.1
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 1.1e-23 113.2 94 62.8
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 5.2e-23 110.9 67 79.1
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 1.2e-22 109.8 80 66.2
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 1.5e-22 109.4 67 80.6
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 3.4e-22 108.2 67 79.1
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 7.6e-22 107.1 80 63.8
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 9.9e-22 106.7 67 71.6
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 1.7e-21 105.9 67 76.1
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 3.7e-21 104.8 67 70.1
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 4.9e-21 104.4 77 66.2
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 8.4e-21 103.6 67 73.1
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 8.4e-21 103.6 73 68.5
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 8.4e-21 103.6 77 67.5
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 1.1e-20 103.2 92 52.2
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 2.4e-20 102.1 82 58.5
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 4.1e-20 101.3 78 59.0
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 4.1e-20 101.3 67 70.1
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 7.1e-20 100.5 67 71.6
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 7.1e-20 100.5 76 63.2
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 1.2e-19 99.8 80 62.5
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 1.6e-19 99.4 67 64.2
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 2.1e-19 99.0 77 62.3
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 2.1e-19 99.0 86 57.0
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 2.1e-19 99.0 67 67.2
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 2.7e-19 98.6 72 65.3
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 3.5e-19 98.2 76 63.2
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 3.5e-19 98.2 92 53.3
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 4.6e-19 97.8 67 67.2
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 6.0e-19 97.4 77 63.6
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 1.0e-18 96.7 92 50.0
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 1.0e-18 96.7 79 59.5
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 1.0e-18 96.7 67 71.6
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 1.7e-18 95.9 78 59.0
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 2.3e-18 95.5 79 55.7
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 2.3e-18 95.5 92 50.0
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 2.3e-18 95.5 79 55.7
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 2.3e-18 95.5 67 65.7
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 3.0e-18 95.1 92 47.8
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 3.0e-18 95.1 67 67.2
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 3.9e-18 94.7 81 59.3
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 3.9e-18 94.7 67 59.7
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 3.9e-18 94.7 77 62.3
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 5.1e-18 94.4 65 60.0
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 6.6e-18 94.0 78 55.1
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 6.6e-18 94.0 91 49.5
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 8.6e-18 93.6 79 53.2
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 8.6e-18 93.6 66 59.1
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 1.1e-17 93.2 67 62.7
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 1.5e-17 92.8 92 52.2
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 1.5e-17 92.8 67 64.2
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 2.5e-17 92.0 67 56.7
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 2.5e-17 92.0 67 56.7
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 2.5e-17 92.0 67 56.7
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 3.3e-17 91.7 66 57.6
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 4.3e-17 91.3 97 47.4
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 5.6e-17 90.9 67 62.7
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 9.6e-17 90.1 67 55.2
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 9.6e-17 90.1 67 56.7
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 9.6e-17 90.1 76 57.9
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 9.6e-17 90.1 76 57.9
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 1.2e-16 89.7 67 55.2
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 1.2e-16 89.7 67 61.2
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.2e-16 89.7 67 61.2
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.2e-16 89.7 67 61.2
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.2e-16 89.7 67 61.2
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.2e-16 89.7 67 64.2
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.2e-16 89.7 67 64.2
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 1.2e-16 89.7 67 64.2
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 1.2e-16 89.7 67 61.2
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 1.2e-16 89.7 76 52.6
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 2.1e-16 89.0 78 57.7
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 3.6e-16 88.2 71 60.6
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 4.7e-16 87.8 92 51.1
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 4.7e-16 87.8 76 57.9
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 6.2e-16 87.4 67 61.2
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 1.1e-15 86.7 67 59.7
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 1.4e-15 86.3 67 61.2
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 1.4e-15 86.3 67 59.7
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 1.4e-15 86.3 67 61.2
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 1.8e-15 85.9 67 59.7
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.8e-15 85.9 67 58.2
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 1.8e-15 85.9 67 59.7
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 2.4e-15 85.5 67 59.7
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 2.4e-15 85.5 67 58.2
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 2.4e-15 85.5 67 58.2
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 2.4e-15 85.5 66 60.6
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 3.1e-15 85.1 67 59.7
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 3.1e-15 85.1 67 59.7
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 3.1e-15 85.1 75 54.7
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 3.1e-15 85.1 82 51.2
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 4.0e-15 84.7 67 52.2
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 4.0e-15 84.7 67 59.7
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 6.8e-15 84.0 75 54.7
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 6.8e-15 84.0 76 53.9
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 8.9e-15 83.6 66 60.6
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 8.9e-15 83.6 84 54.8
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.6e-14 82.0 67 55.2
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.6e-14 82.0 67 55.2
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 2.6e-14 82.0 67 55.2
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 3.4e-14 81.6 76 52.6
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 3.4e-14 81.6 67 55.2
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 3.4e-14 81.6 67 55.2
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 4.4e-14 81.3 52 78.8
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 4.4e-14 81.3 67 53.7
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 4.4e-14 81.3 58 63.8
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 4.4e-14 81.3 66 53.0
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 5.8e-14 80.9 67 61.2
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 5.8e-14 80.9 89 49.4
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 9.9e-14 80.1 67 55.2
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 1.3e-13 79.7 89 49.4
PGSC0003DMG400010902 Solanum tuberosum HOM05D006108 ORTHO05D007605 3.8e-13 78.2 53 75.5
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 4.9e-13 77.8 67 55.2
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 6.4e-13 77.4 67 53.7
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 6.4e-13 77.4 67 53.7
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 1.6e-11 72.8 84 42.9
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 2.3e-10 68.9 52 65.4
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 3.0e-10 68.6 72 51.4
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 2.5e-09 65.5 56 53.6
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 7.3e-09 63.9 57 54.4
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 2.4e-07 58.9 53 52.8
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 5.3e-07 57.8 61 49.2
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 6.9e-07 57.4 43 60.5
MELO3C011555.2 Cucumis melo HOM05D006108 ORTHO05D007605 6.9e-07 57.4 59 47.5
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 3.4e-06 55.1 54 53.7
PGR042G1852 Punica granatum HOM05D000473 ORTHO05D006020 5.8e-06 54.3 85 34.1


User provided reference genes

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