Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003259g0070 Nicotiana tabacum HOM05D006422 ORTHO05D007992 5.5e-131 471.1 258 100.0
Nitab4.5_0000025g0080 Nicotiana tabacum HOM05D006422 ORTHO05D007992 2.2e-119 432.6 268 85.1
PGSC0003DMG400009533 Solanum tuberosum HOM05D006422 ORTHO05D007992 3.7e-103 378.6 258 77.5
Sopen08g002130 Solanum pennellii HOM05D006422 ORTHO05D007992 1.0e-100 370.5 258 76.4
Solyc08g006160.4 Solanum lycopersicum HOM05D006422 ORTHO05D007992 5.0e-100 368.2 258 76.0
CAN.G1364.3 Capsicum annuum HOM05D006422 ORTHO05D007992 3.2e-94 349.0 228 80.3
Peaxi162Scf00045g01530 Petunia axillaris HOM05D006422 ORTHO05D007992 2.7e-93 345.9 233 77.3
Dinv10868 Davidia involucrata HOM05D006422 ORTHO05D007992 9.9e-80 300.8 211 73.9
Dinv26550 Davidia involucrata HOM05D006422 ORTHO05D007992 9.9e-80 300.8 211 73.9
Cc04_g09430 Coffea canephora HOM05D006422 ORTHO05D007992 2.4e-78 296.2 203 74.4
COL.COLO4_18610 Corchorus olitorius HOM05D006422 ORTHO05D007992 7.1e-78 294.7 202 72.8
Migut.A00443 Erythranthe guttata HOM05D006422 ORTHO05D007992 2.7e-77 292.7 213 70.0
MSTRG.11814 Avicennia marina HOM05D006422 ORTHO05D007992 6.6e-76 288.1 203 72.4
TAR383G0184 Trochodendron aralioides HOM05D006422 ORTHO05D007992 1.9e-75 286.6 210 71.9
Aqoxy5G03915 Aquilegia oxysepala HOM05D006422 ORTHO05D007992 5.6e-75 285.0 207 71.5
GSVIVG01035544001 Vitis vinifera HOM05D006422 ORTHO05D007992 5.6e-75 285.0 210 69.5
Duzib168G1765 Durio zibethinus HOM05D006422 ORTHO05D007992 1.3e-74 283.9 211 67.3
Hma1.2p1_0534F.1_g173720 Hydrangea macrophylla HOM05D006422 ORTHO05D007992 1.6e-74 283.5 205 70.7
Ciclev10009324m.g Citrus clementina HOM05D006422 ORTHO05D007992 2.1e-74 283.1 212 68.9
Thecc.09G005200 Theobroma cacao HOM05D006422 ORTHO05D007992 2.1e-74 283.1 202 71.3
Actinidia03579 Actinidia chinensis HOM05D006422 ORTHO05D007992 1.1e-73 280.8 201 70.6
Gohir.A06G106700 Gossypium hirsutum HOM05D006422 ORTHO05D007992 1.8e-73 280.0 208 67.8
Potri.006G276400 Populus trichocarpa HOM05D006422 ORTHO05D007992 4.0e-73 278.9 212 68.4
AUR62020627 Chenopodium quinoa HOM05D006422 ORTHO05D007992 6.9e-73 278.1 203 69.5
Cfa013253 Carpinus fangiana HOM05D006422 ORTHO05D007992 9.0e-73 277.7 201 71.6
PSO170G4757 Papaver somniferum HOM05D006422 ORTHO05D007992 2.0e-72 276.6 227 65.2
HanXRQChr13g0412481 Helianthus annuus HOM05D006422 ORTHO05D007992 3.4e-72 275.8 215 64.2
Gohir.D06G108900 Gossypium hirsutum HOM05D006422 ORTHO05D007992 4.4e-72 275.4 208 66.8
TWI34G0909 Tripterygium wilfordii HOM05D006422 ORTHO05D007992 4.4e-72 275.4 225 63.1
Gorai.010G123700 Gossypium raimondii HOM05D006422 ORTHO05D007992 7.6e-72 274.6 208 66.8
PSO017G3510 Papaver somniferum HOM05D006422 ORTHO05D007992 7.6e-72 274.6 226 64.2
CANSAT25G0758 Cannabis sativa HOM05D006422 ORTHO05D007992 9.9e-72 274.2 227 63.9
MBI13_g31531_MAGBIO Magnolia biondii HOM05D006422 ORTHO05D007992 1.3e-71 273.9 200 68.0
MD15G1109900 Malus domestica HOM05D006422 ORTHO05D007992 1.3e-71 273.9 225 64.4
Nn1g01726 Nelumbo nucifera HOM05D006422 ORTHO05D007992 1.3e-71 273.9 200 70.5
CiPaw.07G214400 Carya illinoinensis HOM05D006422 ORTHO05D007992 1.7e-71 273.5 202 69.8
Lj5g0012981 Lotus japonicus HOM05D006422 ORTHO05D007992 2.2e-71 273.1 211 66.8
Manes.16G136400 Manihot esculenta HOM05D006422 ORTHO05D007992 2.2e-71 273.1 229 63.8
DCAR_003025 Daucus carota HOM05D006422 ORTHO05D007992 2.9e-71 272.7 189 72.5
Eucgr.C02103 Eucalyptus grandis HOM05D006422 ORTHO05D007992 2.9e-71 272.7 203 67.0
Lsat_1_v5_gn_5_61061 Lactuca sativa HOM05D006422 ORTHO05D007992 6.4e-71 271.6 215 64.7
Lalb_Chr14g0362181 Lupinus albus HOM05D006422 ORTHO05D007992 1.1e-70 270.8 222 64.4
ATR0626G032 Amborella trichopoda HOM05D006422 ORTHO05D007992 1.9e-70 270.0 218 63.3
CDE04G2326 Ceratophyllum demersum HOM05D006422 ORTHO05D007992 1.9e-70 270.0 200 67.0
Sc09g0007930 Simmondsia chinensis HOM05D006422 ORTHO05D007992 1.9e-70 270.0 206 67.0
HPP92_004705 Vanilla planifolia HOM05D006422 ORTHO05D007992 5.4e-70 268.5 199 67.8
Prupe.1G462100 Prunus persica HOM05D006422 ORTHO05D007992 1.2e-69 267.3 214 65.4
Rhsim07G0170200 Rhododendron simsii HOM05D006422 ORTHO05D007992 2.1e-69 266.5 217 63.1
RcHm_v2.0_Chr6g0312201 Rosa chinensis HOM05D006422 ORTHO05D007992 6.0e-69 265.0 209 64.6
FAN24G2382 Fragaria x ananassa HOM05D006422 ORTHO05D007992 1.0e-68 264.2 202 65.8
Atru.chr7.2615_Atru.chr7.2616 Acer truncatum HOM05D006422 ORTHO05D007992 1.3e-68 263.8 207 65.7
FvH4_2g30680 Fragaria vesca HOM05D006422 ORTHO05D007992 1.3e-68 263.8 211 63.5
QL12p024696 Quercus lobata HOM05D006422 ORTHO05D007992 1.7e-68 263.5 203 67.5
Sabra06G0214100 Salix brachista HOM05D006422 ORTHO05D007992 3.9e-68 262.3 212 62.7
Ca_12880_v3 Cicer arietinum L. HOM05D006422 ORTHO05D007992 5.1e-68 261.9 201 66.2
PGR042G1463 Punica granatum HOM05D006422 ORTHO05D007992 5.1e-68 261.9 212 63.7
BcaB08g36552 Brassica carinata HOM05D006422 ORTHO05D007992 8.7e-68 261.2 216 59.7
EL10Ac2g03719 Beta vulgaris HOM05D006422 ORTHO05D007992 2.5e-67 259.6 233 60.5
VMungo0647G2190 Vigna mungo HOM05D006422 ORTHO05D007992 2.5e-67 259.6 209 65.1
Phvul.001G058000 Phaseolus vulgaris HOM05D006422 ORTHO05D007992 4.3e-67 258.8 228 61.4
THA.LOC104811048 Tarenaya hassleriana HOM05D006422 ORTHO05D007992 4.3e-67 258.8 218 60.1
vmacro05107 Vaccinium macrocarpon HOM05D006422 ORTHO05D007992 4.3e-67 258.8 184 67.9
Os04g0607000 Oryza sativa ssp. japonica HOM05D006422 ORTHO05D007992 7.3e-67 258.1 210 61.9
unitig_748.g7381 Utricularia gibba HOM05D006422 ORTHO05D007992 9.6e-67 257.7 215 62.8
Psat6g032000 Pisum sativum HOM05D006422 ORTHO05D007992 1.6e-66 256.9 188 67.6
BcaC04g19400 Brassica carinata HOM05D006422 ORTHO05D007992 2.1e-66 256.5 216 58.3
C09p56110 Brassica napus HOM05D006422 ORTHO05D007992 2.1e-66 256.5 216 58.3
BolC9t58478H Brassica oleracea HOM05D006422 ORTHO05D007992 2.1e-66 256.5 216 58.3
FAN27G3442 Fragaria x ananassa HOM05D006422 ORTHO05D007992 2.8e-66 256.1 203 65.0
Sp6g24440 Schrenkiella parvula HOM05D006422 ORTHO05D007992 2.8e-66 256.1 214 59.3
Thhalv10014537m.g Eutrema salsugineum HOM05D006422 ORTHO05D007992 4.8e-66 255.4 216 58.8
BcaB01g04848 Brassica carinata HOM05D006422 ORTHO05D007992 6.2e-66 255.0 248 53.6
AUR62038756 Chenopodium quinoa HOM05D006422 ORTHO05D007992 6.2e-66 255.0 176 69.3
Aa31LG9G9500 Aethionema arabicum HOM05D006422 ORTHO05D007992 8.1e-66 254.6 246 55.3
arahy.Tifrunner.gnm1.ann1.D9GJPD Arachis hypogaea HOM05D006422 ORTHO05D007992 8.1e-66 254.6 218 59.6
A03p09710 Brassica napus HOM05D006422 ORTHO05D007992 8.1e-66 254.6 228 57.5
BraA03t10287Z Brassica rapa HOM05D006422 ORTHO05D007992 8.1e-66 254.6 228 57.5
Medtr1g009980 Medicago truncatula HOM05D006422 ORTHO05D007992 8.1e-66 254.6 201 64.2
arahy.Tifrunner.gnm1.ann1.43EIBT Arachis hypogaea HOM05D006422 ORTHO05D007992 1.1e-65 254.2 214 61.7
TPR.G11997 Trifolium pratense HOM05D006422 ORTHO05D007992 1.1e-65 254.2 201 63.7
BcaB01g04822 Brassica carinata HOM05D006422 ORTHO05D007992 1.4e-65 253.8 211 60.2
A10p19790 Brassica napus HOM05D006422 ORTHO05D007992 1.4e-65 253.8 212 59.4
C03p11290 Brassica napus HOM05D006422 ORTHO05D007992 1.4e-65 253.8 212 59.9
BraA10t44055Z Brassica rapa HOM05D006422 ORTHO05D007992 1.4e-65 253.8 212 59.4
BolC3t13599H Brassica oleracea HOM05D006422 ORTHO05D007992 1.8e-65 253.4 212 59.9
Haze_21696 Corylus avellana HOM05D006422 ORTHO05D007992 1.8e-65 253.4 202 63.9
Zm00001eb071430 Zea mays HOM05D006422 ORTHO05D007992 9.0e-65 251.1 202 63.9
AT5G19940 Arabidopsis thaliana HOM05D006422 ORTHO05D007992 1.2e-64 250.8 212 57.5
Carub.0006s1831 Capsella rubella HOM05D006422 ORTHO05D007992 1.5e-64 250.4 216 56.0
SGA_v2.0_scaffold27G11666 Striga asiatica HOM05D006422 ORTHO05D007992 2.0e-64 250.0 211 63.0
AL6G31470 Arabidopsis lyrata HOM05D006422 ORTHO05D007992 3.4e-64 249.2 212 56.6
CARHR192910 Cardamine hirsuta HOM05D006422 ORTHO05D007992 9.9e-64 247.7 216 55.6
Oeu018400.2 Olea europaea HOM05D006422 ORTHO05D007992 2.9e-63 246.1 169 71.0
ECA240G0283 Erigeron canadensis HOM05D000069 ORTHO05D000060 5.1e-60 235.3 190 61.6
Glyma.17G201600 Glycine max HOM05D006422 ORTHO05D007992 4.3e-59 232.3 195 62.1
Lj7A749G60 Lonicera japonica HOM05D006422 ORTHO05D007992 3.1e-57 226.1 122 86.1
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 9.0e-57 224.6 203 61.6
FAN20G1184 Fragaria x ananassa HOM05D006422 ORTHO05D007992 9.0e-57 224.6 181 62.4
SEGI_33970 Sequoiadendron giganteum HOM05D006422 ORTHO05D007992 8.7e-52 208.0 221 47.5
CiPaw.08G017800 Carya illinoinensis HOM05D006422 ORTHO05D007992 1.1e-49 201.1 211 55.9
AagrBONN_evm.TU.Sc2ySwM_228.4709 Anthoceros agrestis HOM05D006422 ORTHO05D007992 1.9e-46 190.3 177 49.2
Ah.11g043920 Amaranthus hybridus HOM05D006422 ORTHO05D007992 2.5e-46 189.9 209 51.7
Gorai.002G101300 Gossypium raimondii HOM05D006422 ORTHO05D007992 5.5e-46 188.7 112 78.6
SMO364G0843 Selaginella moellendorffii HOM05D006422 ORTHO05D007992 7.2e-46 188.3 177 52.0
Pp3c13_4790 Physcomitrium patens HOM05D006422 ORTHO05D007992 3.5e-45 186.0 184 46.2
FAN15G3645 Fragaria x ananassa HOM05D006422 ORTHO05D007992 1.3e-44 184.1 219 47.5
Mapoly0021s0119 Marchantia polymorpha HOM05D006422 ORTHO05D007992 2.3e-44 183.3 222 43.7
CSS0034711 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 1.4e-41 174.1 155 61.3
Hma1.2p1_0534F.1_g173730 Hydrangea macrophylla HOM05D006422 ORTHO05D007992 5.3e-41 172.2 144 64.6
MELO3C011201.2 Cucumis melo HOM05D006422 ORTHO05D007992 1.0e-39 167.9 150 62.7
CSS0017479 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 2.2e-39 166.8 134 64.9
Oeu014126.1 Olea europaea HOM05D006422 ORTHO05D007992 1.1e-33 147.9 94 77.7
CSS0035518 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 1.4e-28 131.0 138 53.6
CBR_g3792 Chara braunii HOM05D006422 ORTHO05D007992 7.0e-25 118.6 185 34.1
Cre12.g502250 Chlamydomonas reinhardtii HOM05D006422 ORTHO05D007992 4.2e-22 109.4 210 36.2
MCO15G093 Micromonas commoda HOM05D006422 ORTHO05D007992 1.3e-18 97.8 230 30.9
PRCOL_00004658 Prasinoderma coloniale HOM05D006422 ORTHO05D007992 3.5e-16 89.7 203 30.0
Hund19396 Selenicereus undatus HOM05D006422 ORTHO05D007992 6.1e-13 79.0 65 63.1
Cre07.g325736 Chlamydomonas reinhardtii HOM05D006422 ORTHO05D007992 1.7e-10 70.9 235 23.4
GSVIVG01022995001 Vitis vinifera HOM05D003483 ORTHO05D004101 1.7e-07 60.8 204 24.0
vmacro01768 Vaccinium macrocarpon HOM05D003483 ORTHO05D004101 5.0e-07 59.3 223 22.9
Lj9A307T41 Lonicera japonica HOM05D003483 ORTHO05D004101 6.5e-07 58.9 240 23.8
PSO017G4111 Papaver somniferum HOM05D003483 ORTHO05D004101 8.5e-07 58.5 187 23.5
Manes.07G014600 Manihot esculenta HOM05D003483 ORTHO05D004101 1.1e-06 58.2 205 23.9
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 1.5e-06 57.8 213 23.0
Eucgr.I02715 Eucalyptus grandis HOM05D003483 ORTHO05D004101 1.9e-06 57.4 210 23.3
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 4.2e-06 56.2 213 21.1
HanXRQChr03g0066831 Helianthus annuus HOM05D003483 ORTHO05D004101 9.4e-06 55.1 193 21.2
Sabra01G0161900 Salix brachista HOM05D003483 ORTHO05D004101 9.4e-06 55.1 226 26.1


User provided reference genes

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