Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003259g0020 Nicotiana tabacum HOM05D006980 ORTHO05D008704 2.3e-174 616.3 563 100.0
Nitab4.5_0000025g0100 Nicotiana tabacum HOM05D006980 ORTHO05D008704 2.4e-126 456.8 324 96.3
Sopen08g002140 Solanum pennellii HOM05D006980 ORTHO05D008704 1.5e-120 437.6 324 88.3
CAN.G2030.1 Capsicum annuum HOM05D006980 ORTHO05D008704 9.3e-115 418.3 324 89.5
PGSC0003DMG401009543 Solanum tuberosum HOM05D006980 ORTHO05D008704 4.9e-108 396.0 211 90.0
Peaxi162Scf00045g00156 Petunia axillaris HOM05D006980 ORTHO05D008704 2.4e-107 393.7 211 89.6
Solyc08g006170.1 Solanum lycopersicum HOM05D006980 ORTHO05D008704 1.6e-106 391.0 211 88.6
CAN.G137.42 Capsicum annuum HOM05D006980 ORTHO05D008704 1.9e-91 340.9 274 64.6
Cc02_g28460 Coffea canephora HOM05D006980 ORTHO05D008704 1.2e-69 268.5 201 65.2
Dinv21206 Davidia involucrata HOM05D006980 ORTHO05D008704 5.7e-64 249.6 214 56.5
Lsat_1_v5_gn_5_164841 Lactuca sativa HOM05D006980 ORTHO05D008704 7.4e-64 249.2 306 66.7
Actinidia05428 Actinidia chinensis HOM05D006980 ORTHO05D008704 4.1e-62 243.4 195 59.0
CSS0041599 Camellia sinensis var. sinensis HOM05D006980 ORTHO05D008704 9.1e-62 242.3 168 64.9
MSTRG.19261 Avicennia marina HOM05D006980 ORTHO05D008704 2.0e-61 241.1 211 56.4
ECA248G2176 Erigeron canadensis HOM05D006980 ORTHO05D008704 4.5e-61 240.0 220 56.4
Sc02g0000270 Simmondsia chinensis HOM05D006980 ORTHO05D008704 9.4e-59 232.3 190 58.4
TAR633G1277 Trochodendron aralioides HOM05D006980 ORTHO05D008704 8.0e-58 229.2 205 52.2
HanXRQChr02g0032651 Helianthus annuus HOM05D006980 ORTHO05D008704 1.0e-57 228.8 189 58.7
Prupe.7G109800 Prunus persica HOM05D006980 ORTHO05D008704 1.4e-57 228.4 305 64.3
Lj2P137T25 Lonicera japonica HOM05D006980 ORTHO05D008704 4.0e-57 226.9 147 68.0
PSO541G2622 Papaver somniferum HOM05D006980 ORTHO05D008704 4.0e-57 226.9 217 50.2
QL07p038724 Quercus lobata HOM05D006980 ORTHO05D008704 1.3e-55 221.9 165 59.4
Oeu056884.1 Olea europaea HOM05D006980 ORTHO05D008704 2.2e-55 221.1 175 58.3
PSO675G7214 Papaver somniferum HOM05D006980 ORTHO05D008704 2.8e-55 220.7 215 49.3
Cfa016610 Carpinus fangiana HOM05D006980 ORTHO05D008704 3.7e-55 220.3 172 57.6
Ah.02g130100 Amaranthus hybridus HOM05D006980 ORTHO05D008704 8.3e-55 219.2 205 50.7
CiPaw.09G014400 Carya illinoinensis HOM05D006980 ORTHO05D008704 8.3e-55 219.2 231 47.6
Cc00_g27900 Coffea canephora HOM05D006980 ORTHO05D008704 1.8e-54 218.0 201 56.7
Aqoxy2G01180 Aquilegia oxysepala HOM05D006980 ORTHO05D008704 3.1e-54 217.2 218 47.7
Rhsim03G0075000 Rhododendron simsii HOM05D006980 ORTHO05D008704 1.2e-53 215.3 173 59.0
Sed0006527 Sechium edule HOM05D006980 ORTHO05D008704 1.6e-53 214.9 175 56.6
CANSAT64G1568 Cannabis sativa HOM05D006980 ORTHO05D008704 2.7e-53 214.2 190 53.2
FAN05G0999 Fragaria x ananassa HOM05D006980 ORTHO05D008704 4.5e-53 213.4 162 61.1
QL07p038975 Quercus lobata HOM05D006980 ORTHO05D008704 4.5e-53 213.4 158 59.5
Lj1g0023344 Lotus japonicus HOM05D006980 ORTHO05D008704 1.0e-52 212.2 177 55.9
Manes.09G055100 Manihot esculenta HOM05D006980 ORTHO05D008704 1.3e-52 211.8 178 56.2
RcHm_v2.0_Chr3g0473791 Rosa chinensis HOM05D006980 ORTHO05D008704 2.2e-52 211.1 162 60.5
arahy.Tifrunner.gnm1.ann1.IK7M5W Arachis hypogaea HOM05D006980 ORTHO05D008704 2.9e-52 210.7 174 55.2
arahy.Tifrunner.gnm1.ann1.3P0NFT Arachis hypogaea HOM05D006980 ORTHO05D008704 5.0e-52 209.9 174 54.6
EL10Ac6g13708 Beta vulgaris HOM05D006980 ORTHO05D008704 6.5e-52 209.5 203 50.7
PGR142G3286 Punica granatum HOM05D006980 ORTHO05D008704 6.5e-52 209.5 224 47.3
SalBow3G1904 Salvia bowleyana HOM05D006980 ORTHO05D008704 6.5e-52 209.5 185 55.7
SGA_v2.0_scaffold13G06715 Striga asiatica HOM05D006980 ORTHO05D008704 2.5e-51 207.6 199 52.3
SHI12421 Sapria himalayana HOM05D006980 ORTHO05D008704 4.2e-51 206.8 139 64.0
Migut.J01034 Erythranthe guttata HOM05D006980 ORTHO05D008704 7.2e-51 206.1 213 50.2
AUR62014076 Chenopodium quinoa HOM05D006980 ORTHO05D008704 9.4e-51 205.7 178 53.4
COL.COLO4_29731 Corchorus olitorius HOM05D006980 ORTHO05D008704 9.4e-51 205.7 172 54.7
CsaV3_6G007180 Cucumis sativus L. HOM05D006980 ORTHO05D008704 9.4e-51 205.7 192 51.6
TPR.G19555 Trifolium pratense HOM05D006980 ORTHO05D008704 2.1e-50 204.5 163 53.4
MELO3C022409.2 Cucumis melo HOM05D006980 ORTHO05D008704 8.0e-50 202.6 192 50.5
Medtr7g104640 Medicago truncatula HOM05D006980 ORTHO05D008704 1.4e-49 201.8 158 54.4
Potri.006G068700 Populus trichocarpa HOM05D006980 ORTHO05D008704 1.4e-49 201.8 179 53.1
AUR62005415 Chenopodium quinoa HOM05D006980 ORTHO05D008704 2.3e-49 201.1 178 52.2
ClCG06G001250 Citrullus lanatus HOM05D006980 ORTHO05D008704 3.4e-48 197.2 140 61.4
BcaC02g11726 Brassica carinata HOM05D006980 ORTHO05D008704 4.4e-48 196.8 155 56.1
BcaC02g11728 Brassica carinata HOM05D006980 ORTHO05D008704 4.4e-48 196.8 155 56.1
ATR0051G062 Amborella trichopoda HOM05D006980 ORTHO05D008704 5.7e-48 196.4 176 50.0
AL4G32340 Arabidopsis lyrata HOM05D006980 ORTHO05D008704 5.7e-48 196.4 152 58.6
CARHR130480 Cardamine hirsuta HOM05D006980 ORTHO05D008704 5.7e-48 196.4 154 56.5
Thecc.05G089500 Theobroma cacao HOM05D006980 ORTHO05D008704 7.5e-48 196.1 172 51.2
Eucgr.G00971 Eucalyptus grandis HOM05D006980 ORTHO05D008704 9.8e-48 195.7 201 48.3
Nn6g34894 Nelumbo nucifera HOM05D006980 ORTHO05D008704 9.8e-48 195.7 146 60.3
THA.LOC104804920 Tarenaya hassleriana HOM05D006980 ORTHO05D008704 1.3e-47 195.3 179 53.6
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.7e-47 194.9 209 44.5
Atru.chr8.1533 Acer truncatum HOM05D006980 ORTHO05D008704 2.8e-47 194.1 283 62.9
BcaB02g09370 Brassica carinata HOM05D006980 ORTHO05D008704 2.8e-47 194.1 154 55.8
TWI77G0642 Tripterygium wilfordii HOM05D006980 ORTHO05D008704 2.8e-47 194.1 169 53.8
Aa31LG5G21360 Aethionema arabicum HOM05D006980 ORTHO05D008704 1.1e-46 192.2 152 56.6
AT2G36240 Arabidopsis thaliana HOM05D006980 ORTHO05D008704 1.4e-46 191.8 152 57.9
Ciclev10011570m.g Citrus clementina HOM05D006980 ORTHO05D008704 1.8e-46 191.4 179 50.8
Sp4g18460 Schrenkiella parvula HOM05D006980 ORTHO05D008704 4.1e-46 190.3 152 56.6
BcaC02g11731 Brassica carinata HOM05D006980 ORTHO05D008704 1.0e-44 185.7 140 59.3
Cpa.g.sc166.4 Carica papaya HOM05D006980 ORTHO05D008704 1.7e-44 184.9 192 47.4
Lalb_Chr20g0111701 Lupinus albus HOM05D006980 ORTHO05D008704 5.6e-43 179.9 164 52.4
BcaC02g11732 Brassica carinata HOM05D006980 ORTHO05D008704 1.2e-42 178.7 155 52.9
BolC4t22838H Brassica oleracea HOM05D006980 ORTHO05D008704 1.2e-42 178.7 155 52.9
A05p09600 Brassica napus HOM05D006980 ORTHO05D008704 2.1e-42 177.9 152 54.6
C04p11900 Brassica napus HOM05D006980 ORTHO05D008704 1.0e-41 175.6 155 52.9
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 5.2e-41 173.3 146 54.8
BraA05t19913Z Brassica rapa HOM05D006980 ORTHO05D008704 5.2e-41 173.3 151 52.3
Gorai.009G402600 Gossypium raimondii HOM05D006980 ORTHO05D008704 8.9e-41 172.6 135 52.6
GSVIVG01029738001 Vitis vinifera HOM05D006980 ORTHO05D008704 3.4e-40 170.6 212 42.9
Duzib106G0372 Durio zibethinus HOM05D006980 ORTHO05D008704 5.7e-40 169.9 172 46.5
HPP92_011900 Vanilla planifolia HOM05D006980 ORTHO05D008704 2.4e-38 164.5 176 45.5
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 7.0e-38 162.9 115 63.5
Eucgr.G00972 Eucalyptus grandis HOM05D006980 ORTHO05D008704 3.9e-36 157.1 193 43.5
Phvul.001G190300 Phaseolus vulgaris HOM05D006980 ORTHO05D008704 5.0e-36 156.8 176 43.8
VMungo1383G3509 Vigna mungo HOM05D006980 ORTHO05D008704 1.1e-35 155.6 148 48.6
GSVIVG01015930001 Vitis vinifera HOM05D006980 ORTHO05D008704 4.3e-35 153.7 183 44.3
Glyma.03G196000 Glycine max HOM05D006980 ORTHO05D008704 9.5e-35 152.5 147 48.3
Haze_19614 Corylus avellana HOM05D006980 ORTHO05D008704 6.2e-34 149.8 107 62.6
Ca_09007_v3 Cicer arietinum L. HOM05D006980 ORTHO05D008704 1.8e-33 148.3 107 62.6
FAN02G3599 Fragaria x ananassa HOM05D006980 ORTHO05D008704 8.9e-33 146.0 107 64.5
Sabra06G0051200 Salix brachista HOM05D006980 ORTHO05D008704 1.5e-32 145.2 107 60.7
SEGI_13947 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 5.4e-30 136.7 209 37.3
SEGI_40503 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 5.4e-30 136.7 209 37.3
DCAR_013476 Daucus carota HOM05D006980 ORTHO05D008704 2.0e-29 134.8 87 64.4
Thhalv10016603m.g Eutrema salsugineum HOM05D006980 ORTHO05D008704 1.0e-28 132.5 154 42.2
Psat3g033240 Pisum sativum HOM05D006980 ORTHO05D008704 1.3e-28 132.1 107 57.0
arahy.Tifrunner.gnm1.ann1.FQN2WV Arachis hypogaea HOM05D006980 ORTHO05D008704 1.2e-26 125.6 109 51.4
Eucgr.G00976 Eucalyptus grandis HOM05D006980 ORTHO05D008704 1.0e-20 105.9 318 28.0
Os01g0908800 Oryza sativa ssp. japonica HOM05D006980 ORTHO05D008704 2.6e-16 91.3 288 26.4
Solyc09g031810.2 Solanum lycopersicum HOM05D000445 ORTHO05D000314 2.8e-10 71.2 53 66.0
Solyc00g500037.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-09 68.9 53 66.0
Solyc00g500046.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-09 68.9 53 66.0
Solyc00g500081.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-09 68.9 53 66.0
Solyc00g500128.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-09 68.9 53 66.0
Solyc00g500198.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-09 68.9 53 66.0
Solyc00g500327.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.4e-09 68.9 53 66.0
CAN.G1298.13 Capsicum annuum HOM05D000445 ORTHO05D000314 2.4e-09 68.2 53 64.2
Nitab4.5_0003101g0070 Nicotiana tabacum HOM05D000445 ORTHO05D000314 2.4e-09 68.2 53 66.0
Carub.0004s1800 Capsella rubella HOM05D006980 ORTHO05D008704 4.0e-09 67.4 53 58.5
Solyc00g500149.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 1.2e-08 65.9 74 50.0
Nitab4.5_0007104g0060 Nicotiana tabacum HOM05D000445 ORTHO05D000314 1.5e-08 65.5 53 64.2
CAN.G413.6 Capsicum annuum HOM05D000445 ORTHO05D000314 3.4e-08 64.3 53 60.4
ATR0258G003 Amborella trichopoda HOM05D000445 ORTHO05D000314 4.4e-08 63.9 60 60.0
CAN.G1063.2 Capsicum annuum HOM05D000445 ORTHO05D000314 4.4e-08 63.9 55 63.6
CAN.G1738.15 Capsicum annuum HOM05D000445 ORTHO05D000314 4.4e-08 63.9 55 63.6
CAN.G210.9 Capsicum annuum HOM05D000445 ORTHO05D000314 4.4e-08 63.9 55 63.6
PGR111G0085 Punica granatum HOM05D000445 ORTHO05D000314 7.6e-08 63.2 52 61.5
PGR111G0100 Punica granatum HOM05D000445 ORTHO05D000314 7.6e-08 63.2 52 61.5
Dinv39830 Davidia involucrata HOM05D000445 ORTHO05D000314 9.9e-08 62.8 53 62.3
Hma1.2p1_0192F.1_g083680 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 9.9e-08 62.8 53 62.3
Hma1.2p1_0192F.1_g083690 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 9.9e-08 62.8 53 62.3
Hma1.2p1_4210F.1_g338452 Hydrangea macrophylla HOM05D000445 ORTHO05D000314 9.9e-08 62.8 53 62.3
Lj2A1237G134 Lonicera japonica HOM05D000445 ORTHO05D000314 9.9e-08 62.8 53 62.3
Lj2C1238G15 Lonicera japonica HOM05D000445 ORTHO05D000314 9.9e-08 62.8 53 62.3
Lj2C1238G34 Lonicera japonica HOM05D000445 ORTHO05D000314 9.9e-08 62.8 53 62.3
Lj2C1239G59 Lonicera japonica HOM05D000445 ORTHO05D000314 9.9e-08 62.8 53 62.3
Lju5009C0G1 Lonicera japonica HOM05D000445 ORTHO05D000314 9.9e-08 62.8 53 62.3
Sed0022464 Sechium edule HOM05D000445 ORTHO05D000314 1.3e-07 62.4 60 56.7
Migut.D01405 Erythranthe guttata HOM05D000445 ORTHO05D000314 1.7e-07 62.0 77 50.6
LjContig00489g0008652 Lotus japonicus HOM05D000445 ORTHO05D000314 2.9e-07 61.2 52 61.5
RcHm_v2.0_CPg0501801 Rosa chinensis HOM05D000445 ORTHO05D000314 2.9e-07 61.2 52 61.5
RcHm_v2.0_CPg0502611 Rosa chinensis HOM05D000445 ORTHO05D000314 2.9e-07 61.2 52 61.5
SEGI_09666 Sequoiadendron giganteum HOM05D007402 ORTHO05D003673 3.8e-07 60.8 188 23.9
CAN.G219.13 Capsicum annuum HOM05D000445 ORTHO05D001250 4.9e-07 60.5 55 61.8
ECA074G0010 Erigeron canadensis HOM05D000445 ORTHO05D000314 4.9e-07 60.5 53 60.4
ECA169G0002 Erigeron canadensis HOM05D000445 ORTHO05D000314 4.9e-07 60.5 53 60.4
Lsat_1_v5_gn_3_13441 Lactuca sativa HOM05D000445 ORTHO05D000314 4.9e-07 60.5 53 60.4
Lsat_1_v5_gn_8_26500 Lactuca sativa HOM05D000445 ORTHO05D000314 4.9e-07 60.5 53 60.4
Lsat_1_v5_gn_9_85820 Lactuca sativa HOM05D000445 ORTHO05D000314 4.9e-07 60.5 53 60.4
CAN.G939.8 Capsicum annuum HOM05D000445 ORTHO05D000314 6.4e-07 60.1 55 61.8
unitig_91.g26489 Utricularia gibba HOM05D000445 ORTHO05D000314 6.4e-07 60.1 72 47.2
unitig_91.g26515 Utricularia gibba HOM05D000445 ORTHO05D000314 6.4e-07 60.1 72 47.2
unitig_91.g26530 Utricularia gibba HOM05D000445 ORTHO05D000314 6.4e-07 60.1 72 47.2
Gohir.A01G118333 Gossypium hirsutum HOM05D000445 ORTHO05D000314 8.4e-07 59.7 52 59.6
Gohir.A04G039060 Gossypium hirsutum HOM05D000445 ORTHO05D000314 8.4e-07 59.7 52 59.6
Medtr1079s0020 Medicago truncatula HOM05D000445 ORTHO05D000314 8.4e-07 59.7 52 59.6
Solyc11g011430.1 Solanum lycopersicum HOM05D000445 ORTHO05D000314 8.4e-07 59.7 53 60.4
Gohir.A12G088950 Gossypium hirsutum HOM05D000445 ORTHO05D000314 1.1e-06 59.3 45 66.7
SalBow1G2507 Salvia bowleyana HOM05D000445 ORTHO05D000314 1.1e-06 59.3 53 60.4
FvH4_6g18780 Fragaria vesca HOM05D006980 ORTHO05D008704 1.4e-06 58.9 43 65.1
FAN14G4048 Fragaria x ananassa HOM05D006980 ORTHO05D008704 1.4e-06 58.9 43 65.1
Nn021s41513 Nelumbo nucifera HOM05D000445 ORTHO05D000314 1.4e-06 58.9 52 59.6
PSO548G0004 Papaver somniferum HOM05D000445 ORTHO05D000314 1.4e-06 58.9 52 57.7
PSO548G0115 Papaver somniferum HOM05D000445 ORTHO05D000314 1.4e-06 58.9 52 57.7
Sc05g0004090 Simmondsia chinensis HOM05D000445 ORTHO05D000314 1.4e-06 58.9 72 51.4
TAR383G0379 Trochodendron aralioides HOM05D000445 ORTHO05D000314 1.4e-06 58.9 52 59.6
AL8G36470 Arabidopsis lyrata HOM05D007212 ORTHO05D009094 2.4e-06 58.2 134 28.4
EL10As18g24166 Beta vulgaris HOM05D000445 ORTHO05D000314 3.2e-06 57.8 72 48.6
Migut.G00727 Erythranthe guttata HOM05D000445 ORTHO05D000314 3.2e-06 57.8 53 58.5
Potri.013G143400 Populus trichocarpa HOM05D000445 ORTHO05D000314 3.2e-06 57.8 52 57.7
SabraPtG0004600 Salix brachista HOM05D000445 ORTHO05D000314 3.2e-06 57.8 52 57.7
SabraPtG0006900 Salix brachista HOM05D000445 ORTHO05D000314 3.2e-06 57.8 52 57.7
Sc25g0002090 Simmondsia chinensis HOM05D000445 ORTHO05D000314 3.2e-06 57.8 72 50.0
Aqoxy169s001 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 4.2e-06 57.4 52 59.6
Aqoxy3G01862 Aquilegia oxysepala HOM05D000445 ORTHO05D000314 4.2e-06 57.4 52 59.6
AL1G45010 Arabidopsis lyrata HOM05D000445 ORTHO05D000314 5.4e-06 57.0 52 55.8
Lsat_1_v5_gn_5_27680 Lactuca sativa HOM05D000445 ORTHO05D000314 5.4e-06 57.0 46 67.4
Oeu062871.1 Olea europaea HOM05D000445 ORTHO05D000314 5.4e-06 57.0 51 54.9
DCAR_032529 Daucus carota HOM05D000445 ORTHO05D000314 7.1e-06 56.6 46 65.2
DCAR_032547 Daucus carota HOM05D000445 ORTHO05D000314 7.1e-06 56.6 46 65.2


User provided reference genes

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