Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003256g0010 Nicotiana tabacum HOM05D006775 ORTHO05D008344 2.3e-142 508.8 247 100.0
Nitab4.5_0005595g0020 Nicotiana tabacum HOM05D006775 ORTHO05D008344 1.3e-129 466.5 252 91.3
PGSC0003DMG400022660 Solanum tuberosum HOM05D006775 ORTHO05D008344 5.5e-112 407.9 249 79.5
Sopen01g029070 Solanum pennellii HOM05D006775 ORTHO05D008344 1.1e-107 393.7 249 77.1
Solyc01g067280.3 Solanum lycopersicum HOM05D006775 ORTHO05D008344 5.9e-106 387.9 249 76.3
Peaxi162Scf00386g00010 Petunia axillaris HOM05D006775 ORTHO05D008344 2.5e-104 382.5 256 73.4
SalBow2G3406 Salvia bowleyana HOM05D006775 ORTHO05D008344 1.6e-82 310.1 248 62.9
SGA_v2.0_scaffold57G20240 Striga asiatica HOM05D006775 ORTHO05D008344 3.5e-82 308.9 239 64.9
Cc03_g02340 Coffea canephora HOM05D006775 ORTHO05D008344 1.3e-81 307.0 252 62.7
Actinidia40225 Actinidia chinensis HOM05D006775 ORTHO05D008344 3.8e-81 305.4 244 60.7
MSTRG.10056 Avicennia marina HOM05D006775 ORTHO05D008344 3.8e-81 305.4 254 61.4
Migut.G00207 Erythranthe guttata HOM05D006775 ORTHO05D008344 9.5e-80 300.8 242 61.2
Lj3A812T71 Lonicera japonica HOM05D006775 ORTHO05D008344 5.2e-78 295.0 252 57.9
Hma1.2p1_0823F.1_g224630 Hydrangea macrophylla HOM05D006775 ORTHO05D008344 1.2e-77 293.9 238 60.9
DCAR_002444 Daucus carota HOM05D006775 ORTHO05D008344 4.4e-77 292.0 253 56.1
QL06p007489 Quercus lobata HOM05D006775 ORTHO05D008344 1.6e-74 283.5 247 57.9
Cpa.g.sc1008.3 Carica papaya HOM05D006775 ORTHO05D008344 2.0e-74 283.1 231 60.2
Cfa015346 Carpinus fangiana HOM05D006775 ORTHO05D008344 5.9e-74 281.6 253 56.9
vmacro08201 Vaccinium macrocarpon HOM05D006775 ORTHO05D008344 7.8e-74 281.2 231 61.0
Lsat_1_v5_gn_5_50761 Lactuca sativa HOM05D006775 ORTHO05D008344 6.6e-73 278.1 253 55.7
Potri.008G204800 Populus trichocarpa HOM05D006775 ORTHO05D008344 1.1e-72 277.3 247 59.1
Atru.chr4.2756 Acer truncatum HOM05D006775 ORTHO05D008344 9.5e-72 274.2 253 54.2
Eucgr.H03770 Eucalyptus grandis HOM05D006775 ORTHO05D008344 8.0e-71 271.2 240 57.5
TWI09G0706 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 1.0e-70 270.8 230 58.7
HanXRQChr03g0079491 Helianthus annuus HOM05D006775 ORTHO05D008344 1.4e-70 270.4 255 54.9
GSVIVG01017799001 Vitis vinifera HOM05D000611 ORTHO05D000809 1.8e-70 270.0 241 58.1
Sabra08G0157200 Salix brachista HOM05D006775 ORTHO05D008344 2.3e-70 269.6 241 57.7
ECA240G4404 Erigeron canadensis HOM05D006775 ORTHO05D008344 3.1e-70 269.2 247 55.9
Manes.15G016600 Manihot esculenta HOM05D006775 ORTHO05D008344 6.8e-70 268.1 250 54.8
PGR004G1240 Punica granatum HOM05D006775 ORTHO05D008344 6.8e-70 268.1 267 50.9
TWI09G0159 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 6.8e-70 268.1 239 57.3
Sc25g0004760 Simmondsia chinensis HOM05D006775 ORTHO05D008344 1.5e-69 266.9 236 55.9
COL.COLO4_13925 Corchorus olitorius HOM05D006775 ORTHO05D008344 1.4e-67 260.4 232 55.2
Thecc.04G277900 Theobroma cacao HOM05D006775 ORTHO05D008344 1.4e-67 260.4 234 56.0
Nn3g21322 Nelumbo nucifera HOM05D006775 ORTHO05D008344 2.4e-67 259.6 252 52.4
Aqoxy5G01958 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 3.2e-67 259.2 242 52.5
MBI18_g12413_MAGBIO Magnolia biondii HOM05D006775 ORTHO05D008344 5.4e-67 258.5 252 50.4
Duzib151G0911 Durio zibethinus HOM05D006775 ORTHO05D008344 1.2e-66 257.3 218 59.6
CiPaw.02G086400 Carya illinoinensis HOM05D006775 ORTHO05D008344 2.0e-66 256.5 252 53.2
MD00G1092600 Malus domestica HOM05D006775 ORTHO05D008344 1.7e-65 253.4 242 52.1
Glyma.07G251400 Glycine max HOM05D006775 ORTHO05D008344 8.6e-65 251.1 253 53.0
Ciclev10006777m.g Citrus clementina HOM05D000611 ORTHO05D000809 1.1e-64 250.8 233 53.6
PSO832G0266 Papaver somniferum HOM05D006775 ORTHO05D008344 1.2e-63 247.3 252 50.0
Phvul.003G101000 Phaseolus vulgaris HOM05D006775 ORTHO05D008344 4.0e-62 242.3 246 51.2
VMungo1215G1959 Vigna mungo HOM05D006775 ORTHO05D008344 6.8e-62 241.5 246 51.2
Gohir.D10G166800 Gossypium hirsutum HOM05D006775 ORTHO05D008344 1.5e-61 240.4 230 50.9
Gorai.011G186100 Gossypium raimondii HOM05D006775 ORTHO05D008344 2.6e-61 239.6 230 51.3
Glyma.17G022900 Glycine max HOM05D006775 ORTHO05D008344 3.4e-61 239.2 264 49.2
TAR633G2345 Trochodendron aralioides HOM05D001386 ORTHO05D003791 4.9e-60 235.3 235 52.8
Lj4g0016853 Lotus japonicus HOM05D006775 ORTHO05D008344 1.1e-59 234.2 244 50.0
unitig_32.g10786 Utricularia gibba HOM05D006775 ORTHO05D008344 1.4e-59 233.8 222 53.2
Nn4g25991 Nelumbo nucifera HOM05D006775 ORTHO05D008344 2.4e-59 233.0 236 49.2
CsaV3_3G014150 Cucumis sativus L. HOM05D006775 ORTHO05D008344 3.2e-59 232.6 237 51.1
arahy.Tifrunner.gnm1.ann1.HV9WHL Arachis hypogaea HOM05D006775 ORTHO05D008344 4.1e-59 232.3 251 50.2
MELO3C006607.2 Cucumis melo HOM05D006775 ORTHO05D008344 1.2e-58 230.7 237 49.8
Medtr4g118790 Medicago truncatula HOM05D006775 ORTHO05D008344 1.2e-58 230.7 237 51.5
arahy.Tifrunner.gnm1.ann1.UNR197 Arachis hypogaea HOM05D006775 ORTHO05D008344 2.1e-58 229.9 257 49.0
EL10Ac3g06567 Beta vulgaris HOM05D006775 ORTHO05D008344 4.6e-58 228.8 252 49.2
TPR.G14956 Trifolium pratense HOM05D006775 ORTHO05D008344 4.6e-58 228.8 237 50.2
Psat4g030400 Pisum sativum HOM05D006775 ORTHO05D008344 2.3e-57 226.5 237 50.6
ClCG05G005800 Citrullus lanatus HOM05D006775 ORTHO05D008344 8.6e-57 224.6 237 48.1
AUR62042989 Chenopodium quinoa HOM05D006775 ORTHO05D008344 2.5e-56 223.0 250 46.8
Lalb_Chr13g0303871 Lupinus albus HOM05D006775 ORTHO05D008344 2.5e-56 223.0 231 50.6
Oeu062887.1 Olea europaea HOM05D006775 ORTHO05D008344 2.5e-56 223.0 160 68.1
Sed0012602 Sechium edule HOM05D006775 ORTHO05D008344 1.2e-55 220.7 241 48.5
THA.LOC104820238 Tarenaya hassleriana HOM05D006775 ORTHO05D008344 2.1e-55 219.9 238 49.2
Gohir.A09G233400 Gossypium hirsutum HOM05D006775 ORTHO05D008344 5.2e-54 215.3 227 51.1
Psat4g030480 Pisum sativum HOM05D006775 ORTHO05D008344 5.2e-54 215.3 237 47.7
RcHm_v2.0_Chr6g0302841 Rosa chinensis HOM05D006775 ORTHO05D008344 1.2e-53 214.2 239 45.6
CARHR289990 Cardamine hirsuta HOM05D006775 ORTHO05D008344 2.9e-52 209.5 237 49.8
Gohir.D09G234500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 3.7e-52 209.1 227 50.2
ATR0706G197 Amborella trichopoda HOM05D006775 ORTHO05D008344 8.4e-52 208.0 221 46.6
Carub.0007s2625 Capsella rubella HOM05D006775 ORTHO05D008344 1.4e-51 207.2 252 46.4
Sp7g13860 Schrenkiella parvula HOM05D006775 ORTHO05D008344 2.4e-51 206.5 247 47.4
Gorai.006G257400 Gossypium raimondii HOM05D006775 ORTHO05D008344 5.4e-51 205.3 228 50.4
Aa31LG9G1860 Aethionema arabicum HOM05D006775 ORTHO05D008344 1.0e-49 201.1 234 47.0
HPP92_025211 Vanilla planifolia HOM05D006775 ORTHO05D008344 1.0e-49 201.1 242 42.6
A01p21970 Brassica napus HOM05D006775 ORTHO05D008344 1.3e-49 200.7 237 48.5
BraA01t02103Z Brassica rapa HOM05D006775 ORTHO05D008344 1.3e-49 200.7 237 48.5
BcaNung00261 Brassica carinata HOM05D006775 ORTHO05D008344 3.9e-49 199.1 238 46.6
HPP92_025229 Vanilla planifolia HOM05D006775 ORTHO05D008344 5.1e-49 198.7 242 42.6
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 8.6e-49 198.0 228 47.4
TWI09G0165 Tripterygium wilfordii HOM05D006775 ORTHO05D008344 8.6e-49 198.0 193 53.4
BcaC09g50254 Brassica carinata HOM05D001154 ORTHO05D001175 1.1e-48 197.6 227 49.3
C01p27330 Brassica napus HOM05D006775 ORTHO05D008344 1.5e-48 197.2 237 48.1
BolC1t02676H Brassica oleracea HOM05D006775 ORTHO05D008344 1.5e-48 197.2 237 48.1
CANSAT78G0382 Cannabis sativa HOM05D006775 ORTHO05D008344 4.3e-48 195.7 244 46.3
Ca_21549_v3 Cicer arietinum L. HOM05D006775 ORTHO05D008344 5.6e-48 195.3 219 47.5
Rhsim04G0216500 Rhododendron simsii HOM05D006775 ORTHO05D008344 2.8e-47 193.0 232 46.1
Prupe.1G365500 Prunus persica HOM05D006775 ORTHO05D008344 4.7e-47 192.2 162 53.7
Gohir.A10G101330 Gossypium hirsutum HOM05D006775 ORTHO05D008344 2.4e-43 179.9 191 47.6
Dinv38323 Davidia involucrata HOM05D006775 ORTHO05D008344 4.2e-43 179.1 162 56.8
Haze_01265 Corylus avellana HOM05D006775 ORTHO05D008344 1.2e-42 177.6 163 55.2
Zm00001eb285420 Zea mays HOM05D006775 ORTHO05D008344 1.2e-42 177.6 230 44.3
Duzib052G0853 Durio zibethinus HOM05D006775 ORTHO05D008344 6.0e-42 175.3 217 47.0
Os05g0372800 Oryza sativa ssp. japonica HOM05D006775 ORTHO05D008344 5.1e-41 172.2 227 41.4
FvH4_2g38460 Fragaria vesca HOM05D006775 ORTHO05D008344 5.6e-40 168.7 298 34.2
FAN20G0357 Fragaria x ananassa HOM05D006775 ORTHO05D008344 6.2e-39 165.2 296 34.1
HPP92_025275 Vanilla planifolia HOM05D006775 ORTHO05D008344 4.2e-35 152.5 150 46.7
Gohir.D10G153500 Gossypium hirsutum HOM05D006775 ORTHO05D008344 7.1e-35 151.8 219 42.9
CDE08G1672 Ceratophyllum demersum HOM05D006775 ORTHO05D008344 1.3e-33 147.5 237 37.6
AT4G15563 Arabidopsis thaliana HOM05D006775 ORTHO05D008344 5.1e-33 145.6 149 51.7
AL7G39920 Arabidopsis lyrata HOM05D006775 ORTHO05D008344 1.3e-31 141.0 159 48.4
Pp3c2_550 Physcomitrium patens HOM05D006775 ORTHO05D008344 8.1e-31 138.3 255 31.8
CSS0032456 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 5.3e-30 135.6 92 68.5
Oeu052260.1 Olea europaea HOM05D006775 ORTHO05D008344 9.9e-29 131.3 163 47.2
AagrBONN_evm.TU.Sc2ySwM_362.2565 Anthoceros agrestis HOM05D006775 ORTHO05D008344 1.3e-28 131.0 230 32.2
Thhalv10026419m.g Eutrema salsugineum HOM05D006775 ORTHO05D008344 3.8e-28 129.4 155 45.2
Eucgr.A01819 Eucalyptus grandis HOM05D006775 ORTHO05D008344 7.9e-26 121.7 87 64.4
SMO340G0127 Selaginella moellendorffii HOM05D006775 ORTHO05D008344 8.7e-25 118.2 146 41.8
CBR_g21749 Chara braunii HOM05D006775 ORTHO05D008344 5.5e-19 99.0 146 37.0
Rhsim12G0090200 Rhododendron simsii HOM05D006775 ORTHO05D008344 2.1e-18 97.1 66 66.7
Zm00001eb351020 Zea mays HOM05D006775 ORTHO05D008344 2.1e-18 97.1 141 39.0
Actinidia23427 Actinidia chinensis HOM05D006775 ORTHO05D008344 3.9e-17 92.8 64 62.5
Aqoxy5G00644 Aquilegia oxysepala HOM05D006775 ORTHO05D008344 6.7e-17 92.0 80 51.2
Duzib212G0132 Durio zibethinus HOM05D006775 ORTHO05D008344 6.7e-17 92.0 88 50.0
CSS0028683 Camellia sinensis var. sinensis HOM05D006775 ORTHO05D008344 3.7e-15 86.3 81 49.4
Haze_01266 Corylus avellana HOM05D006775 ORTHO05D008344 6.3e-15 85.5 65 64.6
Gorai.011G171400 Gossypium raimondii HOM05D006775 ORTHO05D008344 6.3e-15 85.5 111 46.8
MD09G1114900 Malus domestica HOM05D006775 ORTHO05D008344 1.8e-14 84.0 74 50.0
PSO210G2970 Papaver somniferum HOM05D006775 ORTHO05D008344 1.8e-14 84.0 113 41.6
SalBow1G6319 Salvia bowleyana HOM05D006775 ORTHO05D008344 4.1e-06 56.2 70 45.7


User provided reference genes

Program Settings