Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003254g0110 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 2603.9 1486 100.0
Nitab4.5_0007482g0050 Nicotiana tabacum HOM05D005165 ORTHO05D006361 0.0e+00 2209.1 1539 80.8
Sopen02g025090 Solanum pennellii HOM05D005165 ORTHO05D006361 0.0e+00 1803.5 1558 73.2
Peaxi162Scf00262g00611 Petunia axillaris HOM05D005165 ORTHO05D006361 0.0e+00 1579.7 1537 66.9
Solyc02g080390.2 Solanum lycopersicum HOM05D005165 ORTHO05D006361 0.0e+00 1537.3 1386 71.1
Dinv13878 Davidia involucrata HOM05D005165 ORTHO05D006361 0.0e+00 1379.0 1549 56.0
Potri.004G017500 Populus trichocarpa HOM05D005165 ORTHO05D006361 0.0e+00 1274.2 1539 50.3
Sabra04G0009600 Salix brachista HOM05D005165 ORTHO05D006361 0.0e+00 1274.2 1559 52.9
vmacro03694 Vaccinium macrocarpon HOM05D005165 ORTHO05D006361 0.0e+00 1270.0 1517 51.7
Cc09_g01850 Coffea canephora HOM05D005165 ORTHO05D006361 0.0e+00 1254.2 1537 52.6
CSS0001066 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 0.0e+00 1250.3 1568 54.4
QL05p073800 Quercus lobata HOM05D005165 ORTHO05D006361 0.0e+00 1242.6 1522 51.8
Migut.M01303 Erythranthe guttata HOM05D005165 ORTHO05D006361 0.0e+00 1238.4 1506 53.9
Oeu063907.1 Olea europaea HOM05D005165 ORTHO05D006361 0.0e+00 1234.6 1558 51.5
Lj2C270G14 Lonicera japonica HOM05D005165 ORTHO05D006361 0.0e+00 1207.2 1512 50.6
Cfa000241 Carpinus fangiana HOM05D005165 ORTHO05D006361 0.0e+00 1204.5 1520 48.2
Thecc.06G218200 Theobroma cacao HOM05D005165 ORTHO05D006361 0.0e+00 1198.3 1536 52.3
CANSAT56G1527 Cannabis sativa HOM05D005165 ORTHO05D006361 0.0e+00 1196.0 1540 52.2
Glyma.17G014900 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1185.2 1608 47.3
Lalb_Chr01g0014921 Lupinus albus HOM05D005165 ORTHO05D006361 0.0e+00 1180.2 1535 49.1
SGA_v2.0_scaffold4G01924 Striga asiatica HOM05D005165 ORTHO05D006361 0.0e+00 1179.5 1502 52.3
Medtr4g131940 Medicago truncatula HOM05D005165 ORTHO05D006361 0.0e+00 1175.6 1546 49.1
Duzib235G1549 Durio zibethinus HOM05D005165 ORTHO05D006361 0.0e+00 1173.3 1535 50.9
TAR627G0931 Trochodendron aralioides HOM05D005165 ORTHO05D006361 0.0e+00 1165.6 1526 50.8
arahy.Tifrunner.gnm1.ann1.FU33AK Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1164.8 1552 47.8
Rhsim13G0155600 Rhododendron simsii HOM05D005165 ORTHO05D006361 0.0e+00 1160.2 1514 50.5
Nn1g03565 Nelumbo nucifera HOM05D005165 ORTHO05D006361 0.0e+00 1159.8 1511 48.5
arahy.Tifrunner.gnm1.ann1.K6JFDD Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1157.5 1552 47.8
Phvul.003G077600 Phaseolus vulgaris HOM05D005165 ORTHO05D006361 0.0e+00 1143.3 1591 45.9
arahy.Tifrunner.gnm1.ann1.QZ1TNI Arachis hypogaea HOM05D005165 ORTHO05D006361 0.0e+00 1136.3 1567 45.1
Psat4g007280 Pisum sativum HOM05D005165 ORTHO05D006361 0.0e+00 1135.9 1557 47.8
TWI63G0677 Tripterygium wilfordii HOM05D005165 ORTHO05D006361 0.0e+00 1132.5 1614 47.0
TPR.G37081 Trifolium pratense HOM05D005165 ORTHO05D006361 0.0e+00 1131.7 1632 46.3
Haze_06780 Corylus avellana HOM05D005165 ORTHO05D006361 0.0e+00 1125.5 1529 48.0
Ciclev10014034m.g Citrus clementina HOM05D005165 ORTHO05D006361 0.0e+00 1118.6 1526 45.9
Prupe.4G023200 Prunus persica HOM05D005165 ORTHO05D006361 0.0e+00 1117.1 1535 49.1
RcHm_v2.0_Chr5g0003561 Rosa chinensis HOM05D005165 ORTHO05D006361 0.0e+00 1115.5 1535 49.8
COL.COLO4_31753 Corchorus olitorius HOM05D005165 ORTHO05D006361 0.0e+00 1111.3 1488 49.9
Manes.17G037700 Manihot esculenta HOM05D005165 ORTHO05D006361 0.0e+00 1109.7 1521 48.1
MBI02_g22104_MAGBIO Magnolia biondii HOM05D005165 ORTHO05D006361 0.0e+00 1109.4 1520 48.9
Aqoxy1G03259 Aquilegia oxysepala HOM05D005165 ORTHO05D006361 0.0e+00 1108.2 1543 48.0
Ca_21091_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1107.0 1527 43.9
Ca_30199_v3 Cicer arietinum L. HOM05D005165 ORTHO05D006361 0.0e+00 1104.7 1528 43.8
Glyma.07G259400 Glycine max HOM05D005165 ORTHO05D006361 0.0e+00 1102.0 1608 46.2
DCAR_004209 Daucus carota HOM05D005165 ORTHO05D006361 0.0e+00 1097.4 1489 48.1
Gohir.D10G013600 Gossypium hirsutum HOM05D005165 ORTHO05D006361 0.0e+00 1090.5 1824 46.2
Hund23483 Selenicereus undatus HOM05D005165 ORTHO05D006361 0.0e+00 1087.4 1530 46.4
CsaV3_1G010870 Cucumis sativus L. HOM05D005165 ORTHO05D006361 0.0e+00 1075.1 1518 47.7
HanXRQChr05g0129591 Helianthus annuus HOM05D005165 ORTHO05D006361 4.1e-311 1072.0 1521 48.9
Lj4g0017916 Lotus japonicus HOM05D005165 ORTHO05D006361 5.1e-311 1071.6 1518 47.4
PSO541G6479 Papaver somniferum HOM05D005165 ORTHO05D006361 7.7e-310 1067.8 1544 49.4
ClCG03G004830 Citrullus lanatus HOM05D005165 ORTHO05D006361 1.6e-307 1060.1 1526 46.9
PSO675G7058 Papaver somniferum HOM05D005165 ORTHO05D006361 3.6e-307 1058.9 1547 48.8
Gorai.010G179700 Gossypium raimondii HOM05D005165 ORTHO05D006361 4.4e-305 1052.0 1526 43.9
Sed0027912 Sechium edule HOM05D005165 ORTHO05D006361 9.7e-305 1050.8 1515 46.2
MD10G1319300 Malus domestica HOM05D005165 ORTHO05D006361 5.9e-302 1041.6 1504 48.1
Gohir.D06G153700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 6.5e-301 1038.1 1526 43.9
CSS0020297 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.5e-300 1036.2 1547 45.0
Sc17g0007260 Simmondsia chinensis HOM05D005165 ORTHO05D006361 6.8e-298 1028.1 1464 49.1
FvH4_3g02340 Fragaria vesca HOM05D005165 ORTHO05D006361 5.3e-295 1018.5 1513 48.4
BcaNung02250 Brassica carinata HOM05D005165 ORTHO05D006361 9.1e-295 1017.7 1511 45.7
BcaC09g51197 Brassica carinata HOM05D005165 ORTHO05D006361 1.6e-294 1016.9 1511 44.3
PGR004G2872 Punica granatum HOM05D005165 ORTHO05D006361 6.5e-293 1011.5 1466 48.2
C01p15840 Brassica napus HOM05D005165 ORTHO05D006361 1.4e-290 1003.8 1537 43.5
THA.LOC104813036 Tarenaya hassleriana HOM05D005165 ORTHO05D006361 1.4e-290 1003.8 1550 50.0
BolC1t01538H Brassica oleracea HOM05D005165 ORTHO05D006361 3.0e-290 1002.7 1550 43.9
MSTRG.15978 Avicennia marina HOM05D005165 ORTHO05D006361 4.8e-288 995.3 992 55.7
A01p13150 Brassica napus HOM05D005165 ORTHO05D006361 2.7e-286 989.6 1508 45.0
BraA01t01259Z Brassica rapa HOM05D005165 ORTHO05D006361 1.8e-282 976.9 1528 44.4
AT4G21820 Arabidopsis thaliana HOM05D005165 ORTHO05D006361 1.5e-281 973.8 1515 42.6
Carub.0007s1958 Capsella rubella HOM05D005165 ORTHO05D006361 2.0e-281 973.4 1468 46.2
Atru.chr10.2199 Acer truncatum HOM05D005165 ORTHO05D006361 3.4e-281 972.6 1531 44.5
Sp7g19990 Schrenkiella parvula HOM05D005165 ORTHO05D006361 5.7e-281 971.8 1514 42.8
ECA236G1313 Erigeron canadensis HOM05D005165 ORTHO05D006361 1.2e-278 964.1 1516 46.6
AUR62021974 Chenopodium quinoa HOM05D005165 ORTHO05D006361 1.6e-275 953.7 1492 45.6
MELO3C002466.2 Cucumis melo HOM05D005165 ORTHO05D006361 1.0e-274 951.0 1530 45.2
GSVIVG01002377001 Vitis vinifera HOM05D005165 ORTHO05D006361 7.5e-273 944.9 918 56.9
AUR62012682 Chenopodium quinoa HOM05D005165 ORTHO05D006361 1.1e-271 941.0 1496 45.2
unitig_748.g7100 Utricularia gibba HOM05D005165 ORTHO05D006361 2.8e-267 926.4 1501 41.7
CARHR228530 Cardamine hirsuta HOM05D005165 ORTHO05D006361 8.0e-267 924.9 1486 44.1
Thhalv10024235m.g Eutrema salsugineum HOM05D005165 ORTHO05D006361 7.8e-262 908.3 1499 44.6
FAN21G3214 Fragaria x ananassa HOM05D005165 ORTHO05D006361 8.9e-258 894.8 1499 46.0
Actinidia05522 Actinidia chinensis HOM05D005165 ORTHO05D006361 1.2e-251 874.4 1321 44.7
Gohir.A06G147800 Gossypium hirsutum HOM05D005165 ORTHO05D006361 8.1e-251 871.7 1047 48.9
Aa31LG6G3830 Aethionema arabicum HOM05D005165 ORTHO05D006361 5.2e-250 869.0 1495 42.7
FAN25G1001 Fragaria x ananassa HOM05D005165 ORTHO05D006361 8.9e-250 868.2 1579 43.5
CiPaw.09G089900 Carya illinoinensis HOM05D005165 ORTHO05D006361 2.6e-249 866.7 759 61.7
AL7G32110 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 1.8e-234 817.4 1354 41.3
EL10Ac8g20027 Beta vulgaris HOM05D005165 ORTHO05D006361 3.2e-231 806.6 1523 41.3
VMungo1215G1456 Vigna mungo HOM05D005165 ORTHO05D000002 4.8e-219 766.1 2392 30.2
Lsat_1_v5_gn_7_17620 Lactuca sativa HOM05D005165 ORTHO05D006361 9.3e-215 751.9 769 54.4
Ah.09g235020 Amaranthus hybridus HOM05D005165 ORTHO05D006361 2.7e-214 750.4 1483 41.2
CSS0012929 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 7.9e-214 748.8 1423 41.2
CDE05G2160 Ceratophyllum demersum HOM05D005165 ORTHO05D006361 3.9e-197 693.3 1476 34.2
Eucgr.D01308 Eucalyptus grandis HOM05D005165 ORTHO05D006361 1.5e-180 638.3 1256 36.2
Cpa.g.sc198.36 Carica papaya HOM05D005165 ORTHO05D006361 3.7e-171 607.1 560 59.5
Gohir.A10G013700 Gossypium hirsutum HOM05D005165 ORTHO05D006361 5.4e-162 576.6 1179 45.4
Zm00001eb322760 Zea mays HOM05D005165 ORTHO05D006361 1.3e-160 572.0 1503 32.7
ATR0752G018 Amborella trichopoda HOM05D005165 ORTHO05D006361 1.1e-159 568.9 658 48.3
HPP92_012319 Vanilla planifolia HOM05D005165 ORTHO05D006361 1.5e-156 558.5 855 40.1
Gorai.011G015400 Gossypium raimondii HOM05D005165 ORTHO05D006361 4.1e-146 523.9 1454 32.1
Cpa.g.sc198.37 Carica papaya HOM05D005165 ORTHO05D006361 1.4e-138 498.8 958 40.0
QL05p073557 Quercus lobata HOM05D005165 ORTHO05D006361 2.7e-129 468.0 421 61.5
HPP92_012397 Vanilla planifolia HOM05D005165 ORTHO05D006361 4.3e-127 460.7 1404 29.5
CSS0017164 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.2e-115 421.8 576 46.0
PGSC0003DMG400016486 Solanum tuberosum HOM05D005165 ORTHO05D006361 2.1e-105 388.7 447 66.4
AagrBONN_evm.TU.Sc2ySwM_117.1637__1638 Anthoceros agrestis HOM05D005165 ORTHO05D006361 2.4e-101 375.2 1530 27.8
Mapoly0043s0047 Marchantia polymorpha HOM05D005165 ORTHO05D006361 9.7e-95 353.2 507 40.6
Pp3c24_1350 Physcomitrium patens HOM05D005165 ORTHO05D006361 1.2e-92 346.3 1546 29.7
CiPaw.09G090000 Carya illinoinensis HOM05D005165 ORTHO05D006361 5.5e-90 337.4 417 59.2
SEGI_37992 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.2e-89 336.3 564 37.2
GSVIVG01004517001 Vitis vinifera HOM05D005165 ORTHO05D006361 3.0e-88 331.6 312 63.1
MSTRG.15979 Avicennia marina HOM05D005165 ORTHO05D006361 2.8e-86 325.1 301 65.1
SMO200G0122 Selaginella moellendorffii HOM05D005165 ORTHO05D006361 2.2e-83 315.5 1477 27.9
SEGI_21682 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.7e-75 289.3 304 46.7
FAN21G2432 Fragaria x ananassa HOM05D005165 ORTHO05D006361 2.2e-75 288.9 417 48.4
Lsat_1_v5_gn_7_17640 Lactuca sativa HOM05D005165 ORTHO05D006361 7.0e-69 267.3 305 51.1
Solyc02g080400.3 Solanum lycopersicum HOM05D005165 ORTHO05D006361 4.2e-66 258.1 170 82.9
CSS0021361 Camellia sinensis var. sinensis HOM05D005165 ORTHO05D006361 2.5e-58 232.3 239 56.1
CAN.G569.18 Capsicum annuum HOM05D005165 ORTHO05D006361 2.0e-52 212.6 126 85.7
SEGI_17063 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 8.0e-49 200.7 289 43.3
ATR0752G007 Amborella trichopoda HOM05D005165 ORTHO05D006361 1.3e-46 193.4 233 53.6
CBR_g12408 Chara braunii HOM05D000019 ORTHO05D000048 1.7e-46 193.0 685 27.7
GSVIVG01002955001 Vitis vinifera HOM05D005165 ORTHO05D006361 8.3e-46 190.7 154 66.9
SEGI_30095 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 2.0e-44 186.0 866 25.8
SEGI_19133 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 4.7e-41 174.9 548 27.4
SGA_v2.0_scaffold186G40236 Striga asiatica HOM05D005165 ORTHO05D006361 8.9e-32 144.1 153 53.6
PRCOL_00000773 Prasinoderma coloniale HOM05D005165 ORTHO05D006361 5.4e-29 134.8 426 27.2
HPP92_012318 Vanilla planifolia HOM05D005165 ORTHO05D006361 4.3e-26 125.2 210 42.4
SHI14112 Sapria himalayana HOM05D005165 ORTHO05D006361 1.5e-23 116.7 100 57.0
SEGI_29404 Sequoiadendron giganteum HOM05D005165 ORTHO05D006361 1.7e-22 113.2 441 28.8
HanXRQChr07g0198521 Helianthus annuus HOM05D005165 ORTHO05D006361 2.7e-20 105.9 75 68.0
SHI34979 Sapria himalayana HOM05D005165 ORTHO05D006361 2.3e-19 102.8 195 36.4
MCO03G113 Micromonas commoda HOM05D005165 ORTHO05D006361 7.3e-18 97.8 368 26.9
AL7G32100 Arabidopsis lyrata HOM05D005165 ORTHO05D006361 8.1e-17 94.4 95 55.8
Cre06.g281200 Chlamydomonas reinhardtii HOM05D005165 ORTHO05D006361 2.9e-14 85.9 659 22.8
FAN25G2437 Fragaria x ananassa HOM05D005165 ORTHO05D006361 6.6e-11 74.7 99 48.5
Cfa022813 Carpinus fangiana HOM05D005165 ORTHO05D006361 3.6e-09 68.9 325 24.0
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 1.1e-08 67.4 60 56.7
RcHm_v2.0_Chr6g0271351 Rosa chinensis HOM05D005165 ORTHO05D006361 1.1e-08 67.4 49 63.3
CiPaw.02G155600 Carya illinoinensis HOM05D005165 ORTHO05D006361 4.0e-08 65.5 75 56.0
RcHm_v2.0_Chr5g0054711 Rosa chinensis HOM05D005165 ORTHO05D006361 1.5e-07 63.5 53 58.5
Peaxi162Scf00137g00204 Petunia axillaris HOM05D008574 ORTHO05D010611 4.5e-07 62.0 39 76.9


User provided reference genes

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