Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.0e-29 131.7 66 100.0
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 2.0e-24 115.2 58 98.3
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 3.4e-24 114.4 66 90.9
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 4.4e-24 114.0 58 96.6
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 5.7e-24 113.6 58 96.6
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 1.3e-23 112.5 58 94.8
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 1.3e-23 112.5 58 94.8
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.1e-22 109.4 58 94.8
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.4e-22 109.0 58 91.4
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 1.8e-22 108.6 58 93.1
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 2.4e-22 108.2 59 89.8
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 5.4e-22 107.1 64 85.9
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 2.0e-21 105.1 58 93.1
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 3.5e-21 104.4 59 89.8
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 4.5e-21 104.0 58 87.9
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 4.5e-21 104.0 58 86.2
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 7.7e-21 103.2 58 89.7
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.0e-20 102.8 58 91.4
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 1.0e-20 102.8 58 89.7
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 1.0e-20 102.8 58 87.9
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 1.7e-20 102.1 59 86.4
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 2.3e-20 101.7 58 87.9
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.9e-20 101.3 58 89.7
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 2.9e-20 101.3 59 86.4
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 5.0e-20 100.5 58 86.2
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 5.0e-20 100.5 58 86.2
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 5.0e-20 100.5 58 84.5
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 6.6e-20 100.1 58 89.7
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 6.6e-20 100.1 58 86.2
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 6.6e-20 100.1 58 87.9
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 8.6e-20 99.8 58 84.5
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 1.1e-19 99.4 58 87.9
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 1.1e-19 99.4 58 84.5
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 1.5e-19 99.0 58 86.2
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 1.9e-19 98.6 58 84.5
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.9e-19 98.6 58 86.2
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 2.5e-19 98.2 63 79.4
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 3.3e-19 97.8 58 82.8
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 4.2e-19 97.4 58 84.5
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 4.2e-19 97.4 58 86.2
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 5.5e-19 97.1 59 84.7
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 7.2e-19 96.7 61 82.0
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 9.5e-19 96.3 62 79.0
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 1.2e-18 95.9 59 79.7
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 1.2e-18 95.9 58 84.5
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 1.6e-18 95.5 61 83.6
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 2.1e-18 95.1 63 81.0
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 2.1e-18 95.1 63 81.0
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 2.8e-18 94.7 59 83.1
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 2.8e-18 94.7 58 81.0
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 2.8e-18 94.7 58 81.0
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 2.8e-18 94.7 58 81.0
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 3.6e-18 94.4 59 83.1
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 4.7e-18 94.0 59 83.1
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 8.0e-18 93.2 58 81.0
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 8.0e-18 93.2 58 81.0
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 8.0e-18 93.2 58 84.5
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 1.0e-17 92.8 60 80.0
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 1.0e-17 92.8 59 81.4
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 1.8e-17 92.0 58 79.3
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 2.3e-17 91.7 58 81.0
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.3e-17 91.7 58 79.3
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 3.0e-17 91.3 60 78.3
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 3.0e-17 91.3 63 77.8
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 4.0e-17 90.9 60 78.3
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 5.2e-17 90.5 58 77.6
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 6.8e-17 90.1 58 81.0
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 6.8e-17 90.1 58 81.0
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 8.9e-17 89.7 58 79.3
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 8.9e-17 89.7 58 79.3
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 8.9e-17 89.7 58 79.3
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 8.9e-17 89.7 60 76.7
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 8.9e-17 89.7 58 79.3
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 1.2e-16 89.4 59 78.0
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 1.2e-16 89.4 58 79.3
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 1.5e-16 89.0 58 79.3
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 1.5e-16 89.0 58 79.3
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 2.6e-16 88.2 58 77.6
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 3.4e-16 87.8 58 77.6
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 3.4e-16 87.8 58 79.3
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 3.4e-16 87.8 59 76.3
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 4.4e-16 87.4 60 76.7
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 4.4e-16 87.4 87 57.5
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 4.4e-16 87.4 58 77.6
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 7.5e-16 86.7 59 76.3
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 7.5e-16 86.7 58 77.6
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 7.5e-16 86.7 58 81.0
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 9.8e-16 86.3 60 73.3
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 9.8e-16 86.3 58 75.9
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 9.8e-16 86.3 60 76.7
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.3e-15 85.9 58 75.9
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 1.7e-15 85.5 52 80.8
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 2.2e-15 85.1 59 74.6
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 2.2e-15 85.1 59 74.6
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 3.7e-15 84.3 47 87.2
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 3.7e-15 84.3 59 72.9
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 4.9e-15 84.0 42 95.2
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 4.9e-15 84.0 61 72.1
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 6.3e-15 83.6 49 79.6
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 8.3e-15 83.2 59 72.9
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 8.3e-15 83.2 58 74.1
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 8.3e-15 83.2 58 77.6
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.1e-14 82.8 58 74.1
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.4e-14 82.4 63 68.3
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 1.4e-14 82.4 52 76.9
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.8e-14 82.0 42 92.9
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.8e-14 82.0 63 68.3
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 5.4e-14 80.5 58 72.4
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 5.4e-14 80.5 58 70.7
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 9.2e-14 79.7 49 77.6
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 1.2e-13 79.3 41 92.7
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.6e-13 79.0 58 72.4
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 2.0e-13 78.6 49 77.6
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 2.0e-13 78.6 49 77.6
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 2.0e-13 78.6 49 77.6
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 2.7e-13 78.2 58 69.0
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 4.5e-13 77.4 44 86.4
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 4.5e-13 77.4 42 85.7
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 4.5e-13 77.4 42 85.7
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 5.9e-13 77.0 47 76.6
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 1.7e-12 75.5 41 85.4
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 1.7e-12 75.5 41 85.4
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 1.7e-12 75.5 41 85.4
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 1.7e-12 75.5 41 85.4
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 2.9e-12 74.7 68 63.2
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 2.9e-12 74.7 65 63.1
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 5.0e-12 73.9 67 61.2
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 8.6e-12 73.2 59 67.8
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 8.6e-12 73.2 58 62.1
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 7.3e-11 70.1 58 63.8
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 1.2e-10 69.3 40 80.0
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 1.6e-10 68.9 65 56.9
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 4.7e-10 67.4 57 61.4
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 1.2e-08 62.8 65 55.4
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.2e-08 62.8 47 70.2
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 3.4e-08 61.2 46 67.4
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 4.4e-08 60.8 41 68.3
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 9.8e-08 59.7 58 56.9
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 1.7e-07 58.9 39 71.8
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 1.7e-07 58.9 39 71.8
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.7e-07 58.9 58 56.9
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 2.4e-06 55.1 58 50.0


User provided reference genes

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