Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 7.4e-34 146.7 80 100.0
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.2e-31 139.4 80 96.2
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.2e-31 139.4 80 96.2
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 1.2e-31 139.4 80 96.2
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 2.0e-31 138.7 80 95.0
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 2.6e-31 138.3 80 95.0
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 3.4e-31 137.9 80 95.0
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.7e-30 135.6 80 93.8
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 9.4e-29 129.8 80 88.8
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 9.4e-29 129.8 80 88.8
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 9.4e-29 129.8 80 87.5
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 1.2e-28 129.4 80 87.5
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 1.2e-28 129.4 80 87.5
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 3.6e-28 127.9 80 87.5
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 4.6e-28 127.5 80 87.5
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 6.1e-28 127.1 80 87.5
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 6.1e-28 127.1 80 87.5
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 6.1e-28 127.1 80 87.5
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 7.9e-28 126.7 80 85.0
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 7.9e-28 126.7 80 86.2
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 7.9e-28 126.7 80 86.2
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 7.9e-28 126.7 80 87.5
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 7.9e-28 126.7 80 87.5
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 7.9e-28 126.7 80 87.5
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 7.9e-28 126.7 80 87.5
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 7.9e-28 126.7 80 87.5
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 1.0e-27 126.3 80 86.2
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 1.0e-27 126.3 80 85.0
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 1.0e-27 126.3 80 85.0
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 1.4e-27 125.9 80 85.0
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 1.4e-27 125.9 80 86.2
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 1.4e-27 125.9 80 85.0
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 1.8e-27 125.6 80 85.0
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 1.8e-27 125.6 80 85.0
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 1.8e-27 125.6 80 85.0
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 1.8e-27 125.6 80 85.0
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 1.8e-27 125.6 80 85.0
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 1.8e-27 125.6 80 86.2
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.8e-27 125.6 80 86.2
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 1.8e-27 125.6 80 85.0
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.8e-27 125.6 80 86.2
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 2.3e-27 125.2 80 85.0
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 2.3e-27 125.2 80 85.0
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 2.3e-27 125.2 80 85.0
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 2.3e-27 125.2 80 85.0
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 2.3e-27 125.2 80 86.2
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 3.0e-27 124.8 80 85.0
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 3.0e-27 124.8 80 85.0
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 3.0e-27 124.8 80 85.0
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 3.0e-27 124.8 80 85.0
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 3.9e-27 124.4 80 83.8
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 5.1e-27 124.0 80 85.0
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 5.1e-27 124.0 80 82.5
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 5.1e-27 124.0 80 85.0
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 5.1e-27 124.0 80 83.8
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 5.1e-27 124.0 80 85.0
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 5.1e-27 124.0 80 85.0
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 6.7e-27 123.6 80 83.8
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 6.7e-27 123.6 79 84.8
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 6.7e-27 123.6 80 83.8
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.7e-27 123.6 80 83.8
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 8.8e-27 123.2 80 86.2
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 8.8e-27 123.2 80 83.8
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 1.1e-26 122.9 80 82.5
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 1.1e-26 122.9 80 82.5
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 1.1e-26 122.9 79 82.3
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 1.1e-26 122.9 79 82.3
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 1.1e-26 122.9 80 81.2
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.1e-26 122.9 80 83.8
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 1.5e-26 122.5 80 81.2
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 1.5e-26 122.5 80 81.2
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 2.5e-26 121.7 80 85.0
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 2.5e-26 121.7 80 81.2
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 2.5e-26 121.7 79 82.3
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 2.5e-26 121.7 80 81.2
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 4.3e-26 120.9 80 83.8
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 4.3e-26 120.9 79 81.0
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 4.3e-26 120.9 79 82.3
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 5.7e-26 120.6 79 81.0
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 5.7e-26 120.6 79 81.0
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 7.4e-26 120.2 79 83.5
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 7.4e-26 120.2 81 81.5
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 7.4e-26 120.2 80 82.5
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 1.7e-25 119.0 79 81.0
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 2.2e-25 118.6 77 81.8
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 2.2e-25 118.6 77 81.8
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 2.2e-25 118.6 80 78.8
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 2.2e-25 118.6 79 81.0
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 3.7e-25 117.9 79 79.7
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.7e-25 117.9 80 81.2
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.7e-25 117.9 76 88.2
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 3.7e-25 117.9 79 83.5
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 3.7e-25 117.9 80 78.8
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.3e-25 117.1 80 80.0
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 6.3e-25 117.1 80 81.2
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 6.3e-25 117.1 80 80.0
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 6.3e-25 117.1 80 80.0
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 1.4e-24 115.9 76 84.2
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 1.8e-24 115.5 80 78.8
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.8e-24 115.5 80 78.8
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 1.8e-24 115.5 80 77.5
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 2.4e-24 115.2 76 84.2
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 5.3e-24 114.0 80 78.8
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 6.9e-24 113.6 80 77.5
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 9.1e-24 113.2 80 77.5
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 9.1e-24 113.2 80 80.0
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 1.2e-23 112.8 80 75.0
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 1.5e-23 112.5 77 76.6
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.6e-23 111.7 79 78.5
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 1.7e-22 109.0 69 85.5
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 2.2e-22 108.6 94 68.1
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 2.9e-22 108.2 80 76.2
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 5.0e-22 107.5 69 79.7
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 8.5e-22 106.7 68 80.9
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 3.6e-20 101.3 80 67.5
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 7.9e-20 100.1 80 65.0
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 1.0e-19 99.8 79 64.6
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 1.4e-19 99.4 80 68.8
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 1.4e-19 99.4 77 74.0
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 2.6e-18 95.1 69 78.3
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 7.4e-18 93.6 78 64.1
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 2.8e-17 91.7 69 69.6
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 4.8e-17 90.9 80 65.0
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 7.0e-16 87.0 78 61.5
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 7.7e-15 83.6 80 63.8
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 1.0e-14 83.2 57 78.9
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 1.0e-14 83.2 54 87.0
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.0e-14 83.2 57 82.5
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 1.3e-14 82.8 56 78.6
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 2.2e-14 82.0 54 85.2
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 6.5e-14 80.5 76 67.1
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 1.1e-13 79.7 54 81.5
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 1.5e-13 79.3 77 58.4
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 2.5e-13 78.6 76 64.5
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 4.7e-12 74.3 54 77.8
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 4.7e-12 74.3 54 75.9
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 1.4e-11 72.8 69 68.1
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 3.0e-11 71.6 50 80.0
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 3.0e-11 71.6 80 58.8
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 4.0e-11 71.2 58 69.0
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 6.7e-11 70.5 44 81.8
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 7.5e-10 67.0 70 57.1
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 8.2e-09 63.5 84 52.4
BcaB02g10679 Brassica carinata HOM05D004301 ORTHO05D005124 7.7e-07 57.0 44 70.5
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 1.3e-06 56.2 37 83.8
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 2.2e-06 55.5 56 60.7
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 6.5e-06 53.9 73 46.6


User provided reference genes

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