Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.0e-62 242.3 125 100.0
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 8.0e-43 177.2 94 96.8
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 7.7e-38 160.6 109 79.8
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 1.7e-37 159.5 110 76.4
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 1.7e-37 159.5 110 76.4
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 6.8e-34 147.5 94 83.0
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 5.7e-33 144.4 95 77.9
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.8e-32 142.1 107 74.8
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 3.6e-27 125.2 92 71.7
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 6.8e-26 120.9 92 71.7
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 1.3e-24 116.7 104 61.5
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 1.7e-24 116.3 107 59.8
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 6.4e-24 114.4 104 57.7
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 1.1e-23 113.6 102 56.9
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 1.9e-23 112.8 105 59.0
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 3.2e-23 112.1 107 54.2
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 5.4e-23 111.3 90 65.6
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 9.2e-23 110.5 104 56.7
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 1.2e-22 110.2 111 50.5
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 1.6e-22 109.8 107 51.4
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 1.6e-22 109.8 96 57.3
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 2.7e-22 109.0 107 52.3
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 3.5e-22 108.6 95 50.5
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 6.0e-22 107.8 94 56.4
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.3e-21 106.7 95 55.8
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 1.7e-21 106.3 106 58.5
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 2.3e-21 105.9 85 70.6
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.9e-21 105.1 95 54.7
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 3.9e-21 105.1 110 54.5
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 6.6e-21 104.4 105 58.1
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.1e-20 103.6 95 54.7
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 3.3e-20 102.1 107 47.7
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 5.6e-20 101.3 92 47.8
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 9.5e-20 100.5 115 47.0
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 9.5e-20 100.5 98 55.1
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 9.5e-20 100.5 105 54.3
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 1.2e-19 100.1 94 54.3
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 1.2e-19 100.1 94 54.3
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 2.8e-19 99.0 95 52.6
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.6e-19 98.6 97 50.5
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 4.7e-19 98.2 105 48.6
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 6.2e-19 97.8 100 51.0
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 6.2e-19 97.8 98 56.1
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.1e-18 97.1 96 49.0
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.1e-18 97.1 96 49.0
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 1.8e-18 96.3 102 50.0
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 1.8e-18 96.3 115 45.2
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.3e-18 95.9 106 57.5
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 3.1e-18 95.5 98 50.0
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 5.2e-18 94.7 95 49.5
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 6.8e-18 94.4 86 54.7
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 6.8e-18 94.4 93 59.1
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 8.9e-18 94.0 97 52.6
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 1.2e-17 93.6 102 49.0
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.5e-17 93.2 98 51.0
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 1.5e-17 93.2 103 49.5
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 2.0e-17 92.8 105 51.4
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 2.0e-17 92.8 108 47.2
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 4.4e-17 91.7 103 47.6
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 4.4e-17 91.7 102 47.1
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 4.4e-17 91.7 89 58.4
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 5.8e-17 91.3 104 47.1
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 5.8e-17 91.3 93 51.6
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 7.5e-17 90.9 97 53.6
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 9.8e-17 90.5 96 52.1
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 9.8e-17 90.5 97 51.5
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 9.8e-17 90.5 107 47.7
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.3e-16 90.1 97 50.5
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 2.2e-16 89.4 98 48.0
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 2.2e-16 89.4 105 48.6
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.9e-16 89.0 86 52.3
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.7e-16 88.6 86 52.3
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 3.7e-16 88.6 91 53.8
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 6.4e-16 87.8 106 47.2
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 8.3e-16 87.4 107 49.5
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 1.1e-15 87.0 92 52.2
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 1.4e-15 86.7 101 49.5
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 1.4e-15 86.7 102 48.0
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 1.4e-15 86.7 92 53.3
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 1.9e-15 86.3 99 45.5
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.4e-15 85.9 97 49.5
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 2.4e-15 85.9 110 42.7
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 3.2e-15 85.5 96 45.8
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 5.4e-15 84.7 79 55.7
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 7.0e-15 84.3 92 50.0
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 9.2e-15 84.0 104 46.2
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 1.2e-14 83.6 95 49.5
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 1.2e-14 83.6 95 49.5
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.6e-14 83.2 95 46.3
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 7.8e-14 80.9 106 43.4
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 7.8e-14 80.9 95 46.3
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 1.0e-13 80.5 94 45.7
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.0e-13 80.5 95 46.3
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 1.0e-13 80.5 104 43.3
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 1.0e-13 80.5 91 48.4
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 2.3e-13 79.3 91 48.4
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 3.9e-13 78.6 95 44.2
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 6.6e-13 77.8 89 51.7
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 8.6e-13 77.4 78 55.1
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 1.5e-12 76.6 89 50.6
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 1.9e-12 76.3 102 44.1
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 2.5e-12 75.9 95 41.1
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 4.3e-12 75.1 101 43.6
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 4.3e-12 75.1 101 43.6
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 4.3e-12 75.1 101 43.6
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 5.6e-12 74.7 92 43.5
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 1.2e-11 73.6 88 44.3
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 1.2e-11 73.6 90 51.1
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 1.6e-11 73.2 101 43.6
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 2.1e-11 72.8 101 41.6
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 2.8e-11 72.4 99 40.4
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 3.6e-11 72.0 101 43.6
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 4.7e-11 71.6 96 44.8
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 8.1e-11 70.9 102 44.1
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 1.1e-10 70.5 114 38.6
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 1.1e-10 70.5 107 44.9
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 1.8e-10 69.7 101 39.6
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 2.3e-10 69.3 103 42.7
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 3.1e-10 68.9 99 38.4
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 4.0e-10 68.6 114 38.6
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 6.8e-10 67.8 99 38.4
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 6.8e-10 67.8 68 51.5
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 2.0e-09 66.2 103 37.9
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 3.4e-09 65.5 101 38.6
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 3.4e-09 65.5 101 38.6
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 4.4e-09 65.1 103 39.8
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 4.4e-09 65.1 103 39.8
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 5.8e-09 64.7 92 45.7
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 5.8e-09 64.7 101 38.6
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 7.5e-09 64.3 101 40.6
EL10Ac8g20036 Beta vulgaris HOM05D005226 ORTHO05D004666 2.2e-08 62.8 67 44.8
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 2.2e-08 62.8 103 38.8
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 2.2e-08 62.8 101 40.6
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 2.2e-08 62.8 97 39.2
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 3.7e-08 62.0 96 42.7
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 6.4e-08 61.2 96 39.6
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 8.3e-08 60.8 96 37.5
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 8.3e-08 60.8 97 39.2
Nitab4.5_0000389g0090 Nicotiana tabacum HOM05D005226 ORTHO05D004666 1.1e-07 60.5 62 54.8
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 1.9e-07 59.7 99 33.3
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 1.9e-07 59.7 96 38.5
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 1.9e-07 59.7 99 37.4
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 2.4e-07 59.3 97 37.1
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 2.4e-07 59.3 97 37.1
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 3.2e-07 58.9 97 36.1
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 3.2e-07 58.9 97 36.1
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 5.4e-07 58.2 97 39.2
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 7.1e-07 57.8 78 39.7
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 7.1e-07 57.8 69 46.4
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 9.2e-07 57.4 70 38.6
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 9.2e-07 57.4 78 38.5
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 9.2e-07 57.4 70 38.6
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 9.2e-07 57.4 75 45.3
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 2.1e-06 56.2 86 43.0
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 2.1e-06 56.2 104 35.6
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 3.5e-06 55.5 78 37.2
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 3.5e-06 55.5 78 37.2
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 3.5e-06 55.5 78 37.2
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 3.5e-06 55.5 78 37.2
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 7.8e-06 54.3 69 37.7


User provided reference genes

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