Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003237g0020 Nicotiana tabacum HOM05D006182 ORTHO05D007236 0.0e+00 2257.6 1121 100.0
Nitab4.5_0001611g0150 Nicotiana tabacum HOM05D006182 ORTHO05D007236 0.0e+00 2039.6 1253 83.5
CAN.G210.12 Capsicum annuum HOM05D006182 ORTHO05D007236 0.0e+00 1702.6 1148 74.7
PGSC0003DMG400031482 Solanum tuberosum HOM05D006182 ORTHO05D007236 0.0e+00 1651.0 1155 74.4
Peaxi162Scf00929g00711 Petunia axillaris HOM05D006182 ORTHO05D007236 0.0e+00 1616.3 1148 71.9
Sopen07g009980 Solanum pennellii HOM05D006182 ORTHO05D007236 0.0e+00 1571.6 1159 71.7
Solyc07g021120.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 0.0e+00 1384.4 1062 70.1
Sopen12g025610 Solanum pennellii HOM05D006182 ORTHO05D007236 0.0e+00 1384.0 1156 65.7
Solyc12g062480.3 Solanum lycopersicum HOM05D006182 ORTHO05D007236 0.0e+00 1317.0 931 73.9
Dinv35991 Davidia involucrata HOM05D006182 ORTHO05D007236 1.4e-255 887.1 1214 42.7
Actinidia22605 Actinidia chinensis HOM05D006182 ORTHO05D007236 1.0e-250 870.9 1186 42.2
vmacro21568 Vaccinium macrocarpon HOM05D006182 ORTHO05D007236 7.2e-236 821.6 1196 40.8
Cc00_g16120 Coffea canephora HOM05D006182 ORTHO05D007236 1.6e-230 803.9 1190 41.0
MSTRG.25113 Avicennia marina HOM05D006182 ORTHO05D007236 4.5e-230 802.4 1194 41.1
Rhsim06G0045000 Rhododendron simsii HOM05D006182 ORTHO05D007236 7.8e-230 801.6 1152 42.1
CiPaw.15G064200 Carya illinoinensis HOM05D006182 ORTHO05D007236 8.9e-226 788.1 1180 39.3
Hma1.2p1_0951F.1_g240770 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 8.3e-224 781.6 1178 41.3
Manes.05G170000 Manihot esculenta HOM05D006182 ORTHO05D007236 1.8e-223 780.4 1197 40.1
QL02p006174 Quercus lobata HOM05D006182 ORTHO05D007236 5.0e-221 772.3 1208 39.2
Cfa018501 Carpinus fangiana HOM05D006182 ORTHO05D007236 2.1e-219 766.9 1172 40.1
Atru.chr13.613 Acer truncatum HOM05D006182 ORTHO05D007236 7.0e-215 751.9 1172 39.8
Potri.002G129000 Populus trichocarpa HOM05D006182 ORTHO05D007236 1.2e-214 751.1 1191 38.4
Prupe.1G390200 Prunus persica HOM05D006182 ORTHO05D007236 3.6e-211 739.6 1206 38.4
Lj4A50G37 Lonicera japonica HOM05D006182 ORTHO05D007236 4.4e-209 732.6 1194 38.9
TWI56G0571 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 2.5e-204 716.8 1145 38.6
Nn6g32369 Nelumbo nucifera HOM05D006182 ORTHO05D007236 2.8e-203 713.4 1212 39.0
CANSAT64G1322 Cannabis sativa HOM05D006182 ORTHO05D007236 8.4e-200 701.8 1201 38.1
PGR031G1311 Punica granatum HOM05D006182 ORTHO05D007236 2.7e-198 696.8 1194 38.1
SGA_v2.0_scaffold217G42430 Striga asiatica HOM05D006182 ORTHO05D007236 3.5e-198 696.4 1194 37.9
Haze_17575 Corylus avellana HOM05D006182 ORTHO05D007236 1.3e-197 694.5 1249 36.2
DCAR_012766 Daucus carota HOM05D006182 ORTHO05D007236 1.3e-197 694.5 1199 37.4
MD08G1060500 Malus domestica HOM05D006182 ORTHO05D007236 2.3e-197 693.7 1191 37.2
FvH4_5g30300 Fragaria vesca HOM05D006182 ORTHO05D007236 3.9e-197 693.0 1193 37.8
FAN18G2601 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.8e-194 684.1 1218 36.9
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 2.4e-194 683.7 1199 37.2
RcHm_v2.0_Chr7g0224651 Rosa chinensis HOM05D006182 ORTHO05D007236 3.1e-194 683.3 1198 37.1
Thecc.08G014800 Theobroma cacao HOM05D006182 ORTHO05D007236 4.0e-194 682.9 1194 37.9
Sabra02G0101100 Salix brachista HOM05D006182 ORTHO05D007236 1.7e-192 677.6 1226 36.6
ClCG05G019560 Citrullus lanatus HOM05D006182 ORTHO05D007236 2.9e-184 650.2 1141 36.7
SalBow7G1322 Salvia bowleyana HOM05D006182 ORTHO05D007236 2.3e-181 640.6 1175 36.3
HanXRQChr09g0268131 Helianthus annuus HOM05D006182 ORTHO05D007236 3.1e-178 630.2 1158 35.2
Duzib093G2194 Durio zibethinus HOM05D006182 ORTHO05D007236 2.0e-177 627.5 1187 36.0
Sed0017871 Sechium edule HOM05D006182 ORTHO05D007236 4.5e-177 626.3 1189 35.7
CsaV3_4G034020 Cucumis sativus L. HOM05D006182 ORTHO05D007236 1.3e-173 614.8 1162 34.9
Aqoxy2G01750 Aquilegia oxysepala HOM05D006182 ORTHO05D007236 5.1e-173 612.8 1224 34.3
ECA232G1194 Erigeron canadensis HOM05D006182 ORTHO05D007236 3.3e-172 610.1 1179 33.7
MELO3C032401.2 Cucumis melo HOM05D006182 ORTHO05D007236 1.4e-170 604.7 1202 35.2
Lj3g0019378 Lotus japonicus HOM05D006182 ORTHO05D007236 5.8e-169 599.4 1155 35.2
Psat4g135680 Pisum sativum HOM05D006182 ORTHO05D007236 5.8e-169 599.4 1195 34.8
arahy.Tifrunner.gnm1.ann1.903WAW Arachis hypogaea HOM05D006182 ORTHO05D007236 3.2e-167 593.6 1199 34.7
arahy.Tifrunner.gnm1.ann1.I266YZ Arachis hypogaea HOM05D006182 ORTHO05D007236 5.5e-167 592.8 1190 35.0
Phvul.011G175100 Phaseolus vulgaris HOM05D006182 ORTHO05D007236 4.6e-166 589.7 1209 34.4
Gorai.009G018100 Gossypium raimondii HOM05D006182 ORTHO05D007236 5.1e-165 586.3 1173 35.5
Lsat_1_v5_gn_4_124380 Lactuca sativa HOM05D006182 ORTHO05D007236 5.7e-164 582.8 1155 33.4
Gohir.A05G016750 Gossypium hirsutum HOM05D006182 ORTHO05D007236 5.9e-161 572.8 1167 35.2
PSO541G3468 Papaver somniferum HOM05D006182 ORTHO05D007236 2.1e-158 564.3 1205 33.5
MBI16_g27588_MAGBIO Magnolia biondii HOM05D006182 ORTHO05D007236 2.5e-156 557.4 1204 34.1
EL10Ac1g01812 Beta vulgaris HOM05D006182 ORTHO05D007236 1.3e-155 555.1 1192 32.8
Gohir.D05G017700 Gossypium hirsutum HOM05D006182 ORTHO05D007236 3.4e-153 547.0 1176 34.3
PSO675G0403 Papaver somniferum HOM05D006182 ORTHO05D007236 2.6e-148 530.8 1181 32.3
AL6G43320 Arabidopsis lyrata HOM05D006182 ORTHO05D007236 1.7e-144 518.1 1136 33.7
AT4G09680 Arabidopsis thaliana HOM05D006182 ORTHO05D007236 4.2e-143 513.5 1192 32.6
Aa31LG9G14980 Aethionema arabicum HOM05D006182 ORTHO05D007236 4.1e-138 496.9 1176 32.5
THA.LOC104816122 Tarenaya hassleriana HOM05D006182 ORTHO05D007236 5.0e-136 490.0 1118 32.5
BcaC04g20947 Brassica carinata HOM05D006182 ORTHO05D007236 1.5e-132 478.4 1151 32.5
C09p37620 Brassica napus HOM05D006182 ORTHO05D007236 1.5e-132 478.4 1151 32.5
Carub.0006s2813 Capsella rubella HOM05D006182 ORTHO05D007236 1.5e-132 478.4 1187 31.4
Hund17608 Selenicereus undatus HOM05D006182 ORTHO05D007236 3.3e-132 477.2 1186 31.2
TPR.G9412 Trifolium pratense HOM05D006182 ORTHO05D007236 1.7e-131 474.9 1035 33.9
BolC9t56593H Brassica oleracea HOM05D006182 ORTHO05D007236 2.8e-131 474.2 1155 32.3
A09p29430 Brassica napus HOM05D006182 ORTHO05D007236 5.3e-130 469.9 1138 32.5
Thhalv10029299m.g Eutrema salsugineum HOM05D006182 ORTHO05D007236 7.0e-130 469.5 1124 31.6
Sp6g07920 Schrenkiella parvula HOM05D006182 ORTHO05D007236 9.1e-130 469.2 1162 31.8
BcaB01g01419 Brassica carinata HOM05D006182 ORTHO05D007236 3.5e-129 467.2 1130 32.8
BraA09t38510Z Brassica rapa HOM05D006182 ORTHO05D007236 2.2e-128 464.5 1152 32.6
ATR0225G007 Amborella trichopoda HOM05D006182 ORTHO05D007236 8.5e-128 462.6 1220 31.1
Migut.C00612 Erythranthe guttata HOM05D006182 ORTHO05D007236 3.8e-120 437.2 1155 30.7
Ah.05g168900 Amaranthus hybridus HOM05D006182 ORTHO05D007236 8.9e-117 426.0 1127 30.4
AUR62031379 Chenopodium quinoa HOM05D006182 ORTHO05D007236 5.9e-113 413.3 1185 29.5
unitig_8.g5014 Utricularia gibba HOM05D006182 ORTHO05D007236 2.9e-112 411.0 1158 29.6
Oeu032242.1 Olea europaea HOM05D006182 ORTHO05D007236 4.1e-106 390.6 397 50.9
Zm00001eb311480 Zea mays HOM05D006182 ORTHO05D007236 3.6e-102 377.5 1188 27.4
Oeu033637.2 Olea europaea HOM05D006182 ORTHO05D007236 1.0e-96 359.4 614 36.0
COL.COLO4_26443 Corchorus olitorius HOM05D006182 ORTHO05D007236 3.1e-93 347.8 826 32.8
Ciclev10003312m.g Citrus clementina HOM05D006182 ORTHO05D007236 4.1e-90 337.4 722 33.5
Glyma.08G236800 Glycine max HOM05D006182 ORTHO05D007236 2.1e-89 335.1 776 32.0
Cpa.g.c37201 Carica papaya HOM05D006182 ORTHO05D007236 5.1e-88 330.5 403 45.4
Lalb_Chr04g0264231 Lupinus albus HOM05D006182 ORTHO05D007236 1.6e-86 325.5 451 41.9
HPP92_010557 Vanilla planifolia HOM05D006182 ORTHO05D007236 6.2e-86 323.6 702 33.0
Sc15g0006450 Simmondsia chinensis HOM05D006182 ORTHO05D007236 2.1e-78 298.5 757 30.8
FAN16G1533 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.5e-76 292.4 327 47.7
Hma1.2p1_2764F.1_g328150 Hydrangea macrophylla HOM05D006182 ORTHO05D007236 3.4e-76 291.2 436 40.6
Sc15g0006460 Simmondsia chinensis HOM05D006182 ORTHO05D007236 7.6e-76 290.0 409 38.6
FAN10G2690 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.3e-75 289.3 352 45.2
Ciclev10003565m.g Citrus clementina HOM05D006182 ORTHO05D007236 2.1e-73 282.0 365 43.8
Cpa.g.sc376.1 Carica papaya HOM05D006182 ORTHO05D007236 2.7e-73 281.6 640 32.0
FAN19G3122 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.2e-60 239.6 242 48.8
FAN17G1630 Fragaria x ananassa HOM05D006182 ORTHO05D007236 2.2e-59 235.3 237 48.5
Eucgr.F02378 Eucalyptus grandis HOM05D006182 ORTHO05D007236 2.1e-57 228.8 364 36.3
Os09g0376000 Oryza sativa ssp. japonica HOM05D006182 ORTHO05D007236 1.9e-55 222.2 450 34.2
TWI36G0305 Tripterygium wilfordii HOM05D006182 ORTHO05D007236 1.3e-54 219.5 402 35.1
FAN19G0764 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.5e-47 196.1 204 47.5
VMungo1127G0903 Vigna mungo HOM05D006182 ORTHO05D007236 7.4e-39 167.2 362 33.4
CDE02G1449 Ceratophyllum demersum HOM05D006182 ORTHO05D007236 5.3e-37 161.0 353 30.6
Mapoly0037s0065 Marchantia polymorpha HOM05D006182 ORTHO05D007236 1.9e-34 152.5 412 29.9
Pp3c12_3560 Physcomitrium patens HOM05D006182 ORTHO05D007236 1.8e-32 146.0 419 27.2
Lalb_Chr04g0264191 Lupinus albus HOM05D006182 ORTHO05D007236 3.0e-32 145.2 421 31.8
CARHR260630 Cardamine hirsuta HOM05D006182 ORTHO05D007236 5.1e-32 144.4 536 26.7
SEGI_31096 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 1.7e-30 139.4 659 23.7
Lalb_Chr04g0264211 Lupinus albus HOM05D006182 ORTHO05D007236 2.2e-22 112.5 153 37.3
SMO356G0287 Selaginella moellendorffii HOM05D006182 ORTHO05D007236 6.3e-22 110.9 550 23.5
GSVIVG01009572001 Vitis vinifera HOM05D006182 ORTHO05D007236 1.4e-21 109.8 122 51.6
SEGI_35767 Sequoiadendron giganteum HOM05D006182 ORTHO05D007236 2.1e-17 95.9 182 33.5
Dinv00354 Davidia involucrata HOM05D006182 ORTHO05D007236 2.4e-13 82.4 57 64.9
Dinv35387 Davidia involucrata HOM05D013161 ORTHO05D007236 1.5e-10 73.2 51 64.7
SHI08237 Sapria himalayana HOM05D006182 ORTHO05D007236 5.5e-10 71.2 160 26.9
SEGI_08955 Sequoiadendron giganteum HOM05D009451 ORTHO05D010233 1.6e-09 69.7 490 23.7
AagrBONN_evm.TU.Sc2ySwM_368.213 Anthoceros agrestis HOM05D014773 ORTHO05D007236 6.1e-09 67.8 396 23.5
unitig_19.g30005 Utricularia gibba HOM05D006182 ORTHO05D007236 6.1e-09 67.8 163 33.7


User provided reference genes

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