Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 3.8e-177 624.8 324 100.0
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 6.6e-166 587.4 324 94.4
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 2.5e-149 532.3 317 86.4
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 7.4e-149 530.8 325 85.5
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 1.0e-145 520.4 324 84.6
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 3.8e-145 518.5 324 84.0
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 5.3e-139 498.0 325 81.8
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 1.9e-112 409.8 322 65.8
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 7.2e-112 407.9 322 65.2
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 2.0e-106 389.8 322 63.4
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.6e-103 380.2 321 61.1
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 6.1e-103 378.3 326 62.3
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 3.4e-101 372.5 322 60.2
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 4.5e-98 362.1 306 62.7
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 5.9e-98 361.7 321 60.4
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 3.8e-97 359.0 323 60.7
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 8.0e-95 351.3 316 59.2
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 5.2e-94 348.6 326 56.7
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 5.2e-94 348.6 323 56.3
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 3.4e-93 345.9 323 57.6
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 3.2e-91 339.3 318 57.2
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 7.0e-91 338.2 324 56.8
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 1.6e-90 337.0 324 55.2
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 1.7e-89 333.6 323 54.5
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 5.0e-89 332.0 324 54.9
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.1e-88 330.9 323 53.9
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 1.1e-88 330.9 324 56.2
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 1.5e-88 330.5 325 55.4
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.5e-88 329.7 323 54.2
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 3.3e-88 329.3 323 53.9
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 1.6e-87 327.0 324 54.9
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 6.1e-87 325.1 324 54.0
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 8.0e-87 324.7 326 53.7
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 1.8e-86 323.6 324 52.2
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 3.1e-86 322.8 323 55.4
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 4.0e-86 322.4 319 56.1
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 5.2e-86 322.0 334 54.2
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 5.2e-86 322.0 323 56.3
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 8.9e-86 321.2 324 54.3
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 2.6e-85 319.7 327 56.9
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 4.4e-85 318.9 329 51.4
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 9.8e-85 317.8 324 52.2
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 1.7e-84 317.0 279 60.2
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 8.3e-84 314.7 324 53.7
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 8.3e-84 314.7 335 52.2
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 8.3e-84 314.7 329 51.4
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 1.1e-83 314.3 330 50.6
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 1.9e-83 313.5 329 50.2
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.9e-83 313.5 323 52.3
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 3.2e-83 312.8 330 50.3
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 3.2e-83 312.8 330 50.3
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 5.4e-83 312.0 329 49.8
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 7.0e-83 311.6 324 52.5
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 1.2e-82 310.8 330 50.0
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 1.2e-82 310.8 323 52.3
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.2e-82 310.8 291 58.8
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 1.2e-82 310.8 291 58.1
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 1.6e-82 310.5 325 50.5
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 3.5e-82 309.3 317 50.2
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 6.0e-82 308.5 328 49.4
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.3e-81 306.6 324 49.7
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 6.6e-81 305.1 292 57.5
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 3.3e-80 302.8 330 50.0
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.8e-78 297.0 323 51.4
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 2.3e-78 296.6 309 53.4
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 3.1e-78 296.2 293 53.2
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 3.1e-78 296.2 324 52.2
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 5.2e-78 295.4 317 51.1
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 6.8e-78 295.0 323 51.1
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 8.9e-78 294.7 323 50.2
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 1.2e-77 294.3 326 51.5
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 1.2e-77 294.3 323 50.8
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 3.4e-77 292.7 306 54.9
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 3.4e-77 292.7 322 50.9
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 7.5e-77 291.6 293 55.3
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 7.5e-77 291.6 323 50.8
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 7.5e-77 291.6 320 48.8
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.7e-76 290.4 306 54.9
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 3.7e-76 289.3 323 49.5
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 1.4e-75 287.3 292 53.1
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 1.4e-75 287.3 325 49.2
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 2.4e-75 286.6 323 50.5
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 2.4e-75 286.6 326 50.6
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 7.1e-75 285.0 325 47.4
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.2e-74 284.3 322 49.4
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 1.2e-74 284.3 322 49.4
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 4.6e-74 282.3 325 47.4
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 1.0e-73 281.2 280 54.3
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 1.0e-73 281.2 322 48.1
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.3e-73 280.8 288 54.9
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 2.3e-73 280.0 327 46.2
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 6.6e-73 278.5 323 49.8
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 1.1e-72 277.7 319 47.0
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 1.1e-72 277.7 321 48.3
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 1.9e-72 276.9 324 48.5
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 2.5e-72 276.6 309 49.2
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 3.3e-72 276.2 317 48.3
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 4.3e-72 275.8 319 47.0
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 4.3e-72 275.8 279 55.2
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 9.5e-72 274.6 327 47.1
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 1.6e-71 273.9 307 50.2
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 2.8e-71 273.1 300 52.3
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 2.8e-71 273.1 318 52.5
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 2.8e-71 273.1 325 50.2
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.1e-70 271.2 329 47.1
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 8.9e-70 268.1 323 46.7
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 1.2e-69 267.7 290 52.1
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 1.2e-69 267.7 328 48.8
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 1.5e-69 267.3 328 45.4
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 5.8e-69 265.4 321 45.2
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 1.7e-68 263.8 290 54.5
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 3.7e-68 262.7 266 55.6
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 4.9e-68 262.3 329 45.6
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 1.1e-67 261.2 327 47.4
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.1e-67 261.2 266 54.5
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 3.2e-67 259.6 330 44.8
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 3.2e-67 259.6 330 44.8
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 3.5e-66 256.1 286 52.1
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 1.0e-65 254.6 330 44.5
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 2.5e-64 250.0 285 48.4
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 1.2e-63 247.7 305 48.9
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 1.6e-63 247.3 324 45.4
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 1.1e-62 244.6 325 43.1
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 1.4e-62 244.2 323 44.3
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 9.9e-61 238.0 331 44.1
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 2.2e-60 236.9 330 43.0
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 2.2e-60 236.9 325 44.0
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 2.9e-60 236.5 325 43.1
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 8.4e-60 235.0 198 62.6
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 6.2e-55 218.8 299 43.5
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 1.4e-54 217.6 325 40.3
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.1e-51 208.0 137 71.5
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 4.2e-51 206.1 298 41.6
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 4.2e-51 206.1 323 39.0
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 7.1e-51 205.3 285 43.5
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 4.6e-50 202.6 328 38.4
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.7e-49 200.7 241 46.5
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 5.1e-49 199.1 241 45.6
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 4.8e-47 192.6 137 67.2
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 8.1e-47 191.8 129 69.8
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 2.7e-42 176.8 210 43.8
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 1.3e-39 167.9 324 37.0
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 1.8e-33 147.5 301 37.2
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 7.4e-32 142.1 103 61.2
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 1.2e-26 124.8 325 34.5
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 1.1e-11 75.1 130 37.7
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 1.1e-11 75.1 247 25.5
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 1.5e-08 64.7 39 76.9
AagrBONN_evm.TU.Sc2ySwM_362.2194 Anthoceros agrestis HOM05D024261 ORTHO05D026617 3.1e-06 57.0 262 24.8
Pp3c14_7360 Physcomitrium patens HOM05D024261 ORTHO05D026617 3.1e-06 57.0 190 27.9


User provided reference genes

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