Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003209g0020 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1518.8 747 100.0
Peaxi162Scf00128g00942 Petunia axillaris HOM05D005590 ORTHO05D007084 0.0e+00 1344.7 835 81.9
Sopen05g010060 Solanum pennellii HOM05D005590 ORTHO05D007084 0.0e+00 1332.0 835 80.8
Solyc05g014970.3 Solanum lycopersicum HOM05D005590 ORTHO05D007084 0.0e+00 1326.2 835 80.4
Nitab4.5_0000240g0180 Nicotiana tabacum HOM05D005590 ORTHO05D007084 0.0e+00 1276.5 754 86.3
Lj6C823G8 Lonicera japonica HOM05D005590 ORTHO05D007084 0.0e+00 1194.9 834 72.9
Migut.K00707 Erythranthe guttata HOM05D005590 ORTHO05D007084 0.0e+00 1192.2 838 72.2
MSTRG.7987 Avicennia marina HOM05D005590 ORTHO05D007084 0.0e+00 1180.2 838 71.7
CSS0010322 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1179.5 838 71.8
SGA_v2.0_scaffold9G04769 Striga asiatica HOM05D005590 ORTHO05D007084 0.0e+00 1172.5 843 71.3
CSS0021341 Camellia sinensis var. sinensis HOM05D005590 ORTHO05D007084 0.0e+00 1171.4 838 71.5
Cc11_g16690 Coffea canephora HOM05D005590 ORTHO05D007084 0.0e+00 1168.7 838 71.4
CiPaw.05G113900 Carya illinoinensis HOM05D005590 ORTHO05D007084 0.0e+00 1164.8 838 70.5
TAR629G0528 Trochodendron aralioides HOM05D005590 ORTHO05D007084 0.0e+00 1164.8 838 70.5
GSVIVG01010360001 Vitis vinifera HOM05D005590 ORTHO05D007084 0.0e+00 1164.8 836 70.7
Hma1.2p1_1954F.1_g308890 Hydrangea macrophylla HOM05D005590 ORTHO05D007084 0.0e+00 1160.6 838 71.5
SalBow2G1962 Salvia bowleyana HOM05D005590 ORTHO05D007084 0.0e+00 1158.3 838 70.9
Haze_12376 Corylus avellana HOM05D005590 ORTHO05D007084 0.0e+00 1157.9 847 70.5
Oeu019045.1 Olea europaea HOM05D005590 ORTHO05D007084 0.0e+00 1156.4 844 71.0
Dinv10985 Davidia involucrata HOM05D005590 ORTHO05D007084 0.0e+00 1154.8 827 72.1
CANSAT01G0321 Cannabis sativa HOM05D005590 ORTHO05D007084 0.0e+00 1154.4 838 70.8
ECA234G4696 Erigeron canadensis HOM05D005590 ORTHO05D003891 0.0e+00 1153.3 838 69.9
Duzib248G1471 Durio zibethinus HOM05D005590 ORTHO05D007084 0.0e+00 1151.3 838 70.2
QL03p054580 Quercus lobata HOM05D005590 ORTHO05D007084 0.0e+00 1149.4 837 69.8
AUR62024147 Chenopodium quinoa HOM05D005590 ORTHO05D007084 0.0e+00 1148.7 838 70.5
Cfa009321 Carpinus fangiana HOM05D005590 ORTHO05D007084 0.0e+00 1146.3 865 69.0
arahy.Tifrunner.gnm1.ann1.F3MU0V Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1146.0 797 72.4
Cpa.g.sc43.29 Carica papaya HOM05D005590 ORTHO05D007084 0.0e+00 1144.8 838 69.6
Thecc.02G275300 Theobroma cacao HOM05D005590 ORTHO05D007084 0.0e+00 1144.4 838 69.7
Actinidia33250 Actinidia chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1142.5 831 70.6
Potri.008G177900 Populus trichocarpa HOM05D005590 ORTHO05D007084 0.0e+00 1139.4 837 69.5
Lsat_1_v5_gn_4_2961 Lactuca sativa HOM05D005590 ORTHO05D007084 0.0e+00 1133.6 803 71.6
PSO063G4664 Papaver somniferum HOM05D005590 ORTHO05D007084 0.0e+00 1132.5 838 69.1
Lalb_Chr19g0126761 Lupinus albus HOM05D005590 ORTHO05D007084 0.0e+00 1131.3 831 69.8
Prupe.1G232300 Prunus persica HOM05D005590 ORTHO05D007084 0.0e+00 1130.2 836 69.6
Rhsim12G0104500 Rhododendron simsii HOM05D005590 ORTHO05D007084 0.0e+00 1129.8 912 65.8
Eucgr.B03469 Eucalyptus grandis HOM05D005590 ORTHO05D007084 0.0e+00 1129.4 838 69.0
EL10Ac6g13455 Beta vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1128.6 838 68.7
Manes.13G016500 Manihot esculenta HOM05D005590 ORTHO05D007084 0.0e+00 1128.2 838 68.6
Nn4g22391 Nelumbo nucifera HOM05D005590 ORTHO05D007084 0.0e+00 1127.5 838 69.2
Hund25444 Selenicereus undatus HOM05D005590 ORTHO05D007084 0.0e+00 1119.4 838 68.1
Lj6g0026097 Lotus japonicus HOM05D005590 ORTHO05D007084 0.0e+00 1117.8 840 69.2
Aqoxy5G03486 Aquilegia oxysepala HOM05D005590 ORTHO05D007084 0.0e+00 1116.7 838 68.9
Ciclev10030703m.g Citrus clementina HOM05D005590 ORTHO05D007084 0.0e+00 1116.3 840 68.7
PGR102G0567 Punica granatum HOM05D005590 ORTHO05D007084 0.0e+00 1115.9 840 68.6
FvH4_4g24160 Fragaria vesca HOM05D005590 ORTHO05D007084 0.0e+00 1114.0 839 68.3
arahy.Tifrunner.gnm1.ann1.T6FRZY Arachis hypogaea HOM05D005590 ORTHO05D007084 0.0e+00 1113.2 797 71.3
unitig_22.g6410 Utricularia gibba HOM05D005590 ORTHO05D007084 0.0e+00 1111.7 870 66.2
TWI36G0819 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1109.4 838 68.3
TWI36G1126 Tripterygium wilfordii HOM05D005590 ORTHO05D007084 0.0e+00 1109.4 838 68.3
DCAR_031184 Daucus carota HOM05D005590 ORTHO05D007084 0.0e+00 1106.7 911 63.8
TPR.G21797 Trifolium pratense HOM05D005590 ORTHO05D007084 0.0e+00 1106.7 839 67.7
Glyma.11G248700 Glycine max HOM05D005590 ORTHO05D007084 0.0e+00 1105.9 839 68.3
THA.LOC104807889 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 0.0e+00 1103.6 838 66.8
Gohir.D04G181700 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1102.0 838 67.3
Ah.03g133910 Amaranthus hybridus HOM05D005590 ORTHO05D007084 0.0e+00 1101.7 870 66.6
Gorai.012G175100 Gossypium raimondii HOM05D005590 ORTHO05D007084 0.0e+00 1099.7 838 67.2
vmacro16128 Vaccinium macrocarpon HOM05D005590 ORTHO05D007084 0.0e+00 1097.8 967 61.4
CsaV3_5G030450 Cucumis sativus L. HOM05D005590 ORTHO05D007084 0.0e+00 1096.3 838 67.3
Gohir.A04G138800 Gossypium hirsutum HOM05D005590 ORTHO05D007084 0.0e+00 1095.1 838 66.9
CDE08G0401 Ceratophyllum demersum HOM05D005590 ORTHO05D007084 0.0e+00 1093.6 838 66.3
MELO3C011884.2 Cucumis melo HOM05D005590 ORTHO05D007084 0.0e+00 1093.2 838 67.1
RcHm_v2.0_Chr4g0430931 Rosa chinensis HOM05D005590 ORTHO05D007084 0.0e+00 1093.2 838 67.3
VMungo1383G1779 Vigna mungo HOM05D005590 ORTHO05D007084 0.0e+00 1093.2 838 67.4
Sabra08G0135700 Salix brachista HOM05D005590 ORTHO05D007084 0.0e+00 1090.5 842 66.9
AT1G67550 Arabidopsis thaliana HOM05D005590 ORTHO05D007084 0.0e+00 1086.2 839 66.6
Medtr3g085640 Medicago truncatula HOM05D005590 ORTHO05D007084 0.0e+00 1083.9 837 67.5
CARHR060120 Cardamine hirsuta HOM05D005590 ORTHO05D007084 0.0e+00 1083.2 838 66.8
BcaC03g14846 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1082.0 839 66.5
AL2G26220 Arabidopsis lyrata HOM05D005590 ORTHO05D007084 0.0e+00 1081.6 838 66.3
Phvul.001G260000 Phaseolus vulgaris HOM05D005590 ORTHO05D007084 0.0e+00 1080.9 839 66.7
Zm00001eb118150 Zea mays HOM05D005590 ORTHO05D007084 0.0e+00 1080.9 843 65.4
Thhalv10018120m.g Eutrema salsugineum HOM05D005590 ORTHO05D007084 0.0e+00 1080.5 838 66.3
FAN07G0306 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1080.5 901 63.3
BcaB05g24294 Brassica carinata HOM05D005590 ORTHO05D007084 0.0e+00 1080.1 838 66.3
Carub.0002s1389 Capsella rubella HOM05D005590 ORTHO05D007084 0.0e+00 1079.7 839 66.3
A02p14320 Brassica napus HOM05D005590 ORTHO05D007084 0.0e+00 1078.9 845 66.0
Sp5g22560 Schrenkiella parvula HOM05D005590 ORTHO05D007084 0.0e+00 1078.2 838 66.6
BolC2t08460H Brassica oleracea HOM05D005590 ORTHO05D007084 0.0e+00 1077.8 845 66.0
FAN12G4158 Fragaria x ananassa HOM05D005590 ORTHO05D007084 0.0e+00 1076.6 908 63.0
BraA02t06492Z Brassica rapa HOM05D005590 ORTHO05D007084 5.1e-312 1074.3 845 65.8
Glyma.05G146000 Glycine max HOM05D005590 ORTHO05D007084 1.0e-311 1073.2 840 66.1
Sed0016931 Sechium edule HOM05D005590 ORTHO05D007084 1.7e-310 1068.9 838 65.9
AUR62005583 Chenopodium quinoa HOM05D005590 ORTHO05D007084 6.6e-310 1067.0 838 67.2
HanXRQChr12g0385371 Helianthus annuus HOM05D005590 ORTHO05D007084 2.3e-307 1058.5 777 68.9
Sc11g0000610 Simmondsia chinensis HOM05D005590 ORTHO05D007084 1.2e-306 1056.2 743 71.2
Ca_16478_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 2.9e-305 1051.6 814 67.2
COL.COLO4_12817 Corchorus olitorius HOM05D005590 ORTHO05D007084 3.7e-305 1051.2 814 66.7
Cfa009347 Carpinus fangiana HOM05D005590 ORTHO05D007084 8.3e-305 1050.0 750 71.3
PSO782G2635 Papaver somniferum HOM05D005590 ORTHO05D007084 1.9e-301 1038.9 781 67.6
ClCG11G013850 Citrullus lanatus HOM05D005590 ORTHO05D007084 4.3e-301 1037.7 815 66.1
Aa31sc48G50 Aethionema arabicum HOM05D005590 ORTHO05D007084 1.5e-298 1029.2 821 65.3
FAN22G2048 Fragaria x ananassa HOM05D005590 ORTHO05D007084 1.5e-290 1002.7 751 68.3
CAN.G1178.7 Capsicum annuum HOM05D005590 ORTHO05D007084 2.6e-290 1001.9 651 79.4
Pp3c24_5050 Physcomitrium patens HOM05D005590 ORTHO05D007084 5.4e-288 994.2 839 61.0
C02p23180 Brassica napus HOM05D005590 ORTHO05D007084 6.0e-287 990.7 741 68.0
SMO117G0108 Selaginella moellendorffii HOM05D005590 ORTHO05D007084 4.8e-284 981.1 858 58.9
SHI17943 Sapria himalayana HOM05D005590 ORTHO05D007084 7.6e-282 973.8 768 65.1
AagrBONN_evm.TU.Sc2ySwM_344.1264 Anthoceros agrestis HOM05D005590 ORTHO05D007084 4.9e-281 971.1 816 61.3
Mapoly0026s0042 Marchantia polymorpha HOM05D005590 ORTHO05D007084 1.6e-276 956.1 844 58.9
Psat5g098160 Pisum sativum HOM05D005590 ORTHO05D007084 8.7e-270 933.7 697 68.6
Sed0012865 Sechium edule HOM05D005590 ORTHO05D007084 2.9e-265 918.7 748 63.0
CBR_g46753 Chara braunii HOM05D005590 ORTHO05D007084 1.4e-264 916.4 852 57.2
ATR0686G208 Amborella trichopoda HOM05D005590 ORTHO05D007084 7.4e-261 904.0 839 58.0
MCO04G019 Micromonas commoda HOM05D005590 ORTHO05D007084 1.3e-260 903.3 851 57.0
Atru.chr11.2279 Acer truncatum HOM05D005590 ORTHO05D007084 9.0e-259 897.1 693 67.7
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 1.5e-253 879.8 839 56.9
PGSC0003DMG400001246 Solanum tuberosum HOM05D005590 ORTHO05D007084 7.7e-250 867.5 465 90.3
Ca_29988_v3 Cicer arietinum L. HOM05D005590 ORTHO05D007084 4.7e-223 778.5 617 65.5
HPP92_006206 Vanilla planifolia HOM05D005590 ORTHO05D007084 2.4e-195 686.4 468 71.8
MD13G1114900 Malus domestica HOM05D005590 ORTHO05D007084 4.3e-144 516.2 415 66.0
THA.LOC104808470 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 1.8e-121 441.0 295 74.9
MD13G1115100 Malus domestica HOM05D005590 ORTHO05D007084 3.4e-112 410.2 285 71.2
MD13G1114500 Malus domestica HOM05D005590 ORTHO05D007084 7.2e-107 392.5 306 68.0
SEGI_14306 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 2.3e-105 387.5 307 62.5
THA.LOC104807890 Tarenaya hassleriana HOM05D005590 ORTHO05D007084 1.5e-96 358.2 254 72.0
FAN17G0818 Fragaria x ananassa HOM05D005590 ORTHO05D007084 2.1e-90 337.8 263 65.4
SEGI_06493 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.0e-52 212.6 139 76.3
MD16G1113300 Malus domestica HOM05D005590 ORTHO05D007084 1.3e-50 205.7 195 58.5
CAN.G1862.1 Capsicum annuum HOM05D005590 ORTHO05D007084 4.2e-46 190.7 161 64.0
Thecc.01G288800 Theobroma cacao HOM05D005590 ORTHO05D007084 1.2e-45 189.1 194 55.2
SGA_v2.0_scaffold218G42496 Striga asiatica HOM05D005590 ORTHO05D007084 2.1e-45 188.3 117 78.6
MD13G1114100 Malus domestica HOM05D005590 ORTHO05D007084 5.7e-35 153.7 308 36.0
Zm00001eb372290 Zea mays HOM05D005590 ORTHO05D007084 8.2e-34 149.8 94 75.5
SEGI_40048 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.8e-33 148.7 140 54.3
MBI11_g15881_MAGBIO Magnolia biondii HOM05D005590 ORTHO05D007084 3.5e-29 134.4 82 80.5
HanXRQChr10g0279721 Helianthus annuus HOM05D005590 ORTHO05D007084 1.5e-27 129.0 100 65.0
Thecc.01G288900 Theobroma cacao HOM05D005590 ORTHO05D007084 1.5e-27 129.0 133 52.6
SEGI_08905 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 3.7e-26 124.4 76 76.3
Cfa009349 Carpinus fangiana HOM05D005590 ORTHO05D043575 2.2e-23 115.2 74 77.0
TAR629G1224 Trochodendron aralioides HOM05D005590 ORTHO05D043575 3.2e-22 111.3 74 74.3
Glyma.08G103032 Glycine max HOM05D005590 ORTHO05D007084 1.7e-18 99.0 67 71.6
Zm00001eb019970 Zea mays HOM05D005590 ORTHO05D007084 2.6e-16 91.7 68 64.7
Atru.chr11.2280 Acer truncatum HOM05D005590 ORTHO05D007084 8.5e-15 86.7 105 51.4
Glyma.08G102966 Glycine max HOM05D005590 ORTHO05D007084 1.9e-14 85.5 47 83.0
SHI17942 Sapria himalayana HOM05D000084 ORTHO05D002602 3.1e-09 68.2 50 64.0
SEGI_03265 Sequoiadendron giganteum HOM05D005590 ORTHO05D007084 1.5e-08 65.9 42 81.0
MD16G1113700 Malus domestica HOM05D005590 ORTHO05D007084 2.6e-08 65.1 41 75.6


User provided reference genes

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