Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 3.3e-207 724.9 399 100.0
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 1.3e-182 643.3 380 92.4
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 2.9e-171 605.5 412 86.4
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 5.5e-170 601.3 391 87.7
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 1.2e-169 600.1 380 83.9
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 1.3e-168 596.7 380 82.6
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 3.0e-168 595.5 381 83.7
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 6.7e-168 594.3 380 82.9
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 2.5e-167 592.4 390 81.0
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 2.2e-166 589.3 380 83.9
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 1.8e-165 586.3 380 82.9
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 5.9e-164 581.3 380 81.3
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 3.2e-162 575.5 383 80.4
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 1.8e-160 569.7 380 80.5
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 3.0e-160 568.9 379 81.5
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 3.9e-160 568.5 380 80.0
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 8.8e-160 567.4 383 78.6
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 1.1e-159 567.0 383 78.3
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 1.5e-159 566.6 380 81.6
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 2.0e-159 566.2 380 78.4
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 3.3e-159 565.5 379 78.9
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 5.7e-159 564.7 372 80.1
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 5.7e-159 564.7 389 77.9
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 7.4e-159 564.3 381 79.3
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 7.4e-159 564.3 382 79.1
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 2.4e-157 559.3 375 80.5
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 2.4e-157 559.3 375 80.3
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 5.3e-157 558.1 378 79.1
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 6.9e-157 557.8 383 80.4
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 6.9e-157 557.8 384 78.9
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 6.9e-157 557.8 380 78.7
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 9.1e-157 557.4 380 78.9
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.5e-156 556.6 378 78.8
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 1.5e-156 556.6 381 77.7
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 2.0e-156 556.2 384 78.9
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 2.0e-156 556.2 375 80.3
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 2.6e-156 555.8 380 77.1
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 3.4e-156 555.4 380 77.4
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 7.7e-156 554.3 382 78.0
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 7.7e-156 554.3 383 78.6
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 1.0e-155 553.9 380 78.4
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 1.0e-155 553.9 384 77.9
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 1.7e-155 553.1 381 77.4
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 2.9e-155 552.4 381 79.8
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 2.9e-155 552.4 380 77.1
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 3.8e-155 552.0 383 78.6
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 5.0e-155 551.6 390 77.9
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 6.5e-155 551.2 380 76.8
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 6.5e-155 551.2 380 80.3
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 1.1e-154 550.4 375 78.1
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 1.4e-154 550.1 375 78.4
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 2.5e-154 549.3 381 78.2
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 3.2e-154 548.9 375 79.5
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 5.5e-154 548.1 384 79.2
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 9.4e-154 547.4 380 77.9
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.6e-153 546.6 384 78.9
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 2.7e-153 545.8 369 78.3
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 7.9e-153 544.3 384 79.2
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 1.8e-152 543.1 381 76.4
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 3.0e-152 542.3 382 77.0
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 3.9e-152 542.0 375 79.2
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 5.1e-152 541.6 381 76.4
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 8.8e-152 540.8 400 73.8
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 1.1e-151 540.4 381 76.4
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.1e-151 540.4 380 77.6
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 2.6e-151 539.3 381 76.4
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 3.3e-151 538.9 393 74.3
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 3.3e-151 538.9 391 75.4
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 5.7e-151 538.1 380 75.0
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 1.3e-150 537.0 381 75.9
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 2.8e-150 535.8 381 75.6
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 6.3e-150 534.6 410 71.7
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 1.4e-149 533.5 320 92.2
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 3.1e-149 532.3 380 75.8
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 3.1e-149 532.3 382 77.7
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 4.1e-149 531.9 384 74.7
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 7.0e-149 531.2 381 73.5
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 9.1e-149 530.8 381 76.4
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 1.2e-148 530.4 380 74.7
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 1.5e-148 530.0 404 74.5
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 2.0e-148 529.6 388 73.7
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 5.9e-148 528.1 369 75.3
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.8e-147 525.4 356 80.1
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 6.5e-147 524.6 389 73.5
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 2.5e-146 522.7 380 74.5
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 4.7e-145 518.5 380 75.0
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 6.1e-145 518.1 381 74.0
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 1.8e-144 516.5 381 73.8
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 3.9e-144 515.4 381 73.0
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 6.7e-144 514.6 367 74.4
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 6.7e-144 514.6 375 75.2
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 8.8e-144 514.2 381 73.8
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 8.8e-144 514.2 381 72.7
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 5.7e-143 511.5 380 74.5
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 5.7e-143 511.5 385 71.4
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 9.7e-143 510.8 368 74.5
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 9.7e-143 510.8 380 72.9
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 1.3e-142 510.4 382 73.6
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 2.8e-142 509.2 380 70.5
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 2.4e-141 506.1 385 71.4
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.6e-140 502.7 381 70.1
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 5.9e-140 501.5 381 70.1
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 7.7e-140 501.1 385 70.4
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 1.2e-132 477.2 320 79.7
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 1.2e-127 460.7 381 65.6
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 1.7e-126 456.8 403 65.8
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 6.3e-126 454.9 372 69.9
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.4e-125 453.8 402 65.7
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 2.9e-123 446.0 369 63.4
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 3.3e-122 442.6 388 63.4
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 2.8e-121 439.5 380 66.3
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.5e-119 433.7 380 65.8
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 1.7e-107 393.7 253 89.3
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 3.3e-106 389.4 381 60.9
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 1.1e-101 374.4 206 89.8
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 2.3e-99 366.7 338 63.3
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 1.2e-95 354.4 288 67.0
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 3.5e-92 342.8 375 53.9
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 1.1e-88 331.3 262 74.0
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 4.9e-86 322.4 324 53.7
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 6.4e-86 322.0 387 54.8
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.3e-83 314.3 361 52.4
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.4e-80 303.5 219 73.5
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 2.4e-77 293.5 279 63.1
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 2.4e-77 293.5 279 63.1
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 1.2e-76 291.2 383 44.9
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 6.6e-75 285.4 221 70.1
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 1.3e-67 261.2 320 51.9
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 7.1e-61 238.8 202 67.3
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.3e-57 228.0 279 52.3
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.1e-56 224.9 371 40.7
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 3.8e-54 216.5 399 37.1
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 4.1e-48 196.4 364 37.1
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.3e-46 191.4 164 64.0
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.0e-39 167.5 96 84.4
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 3.2e-37 160.2 91 84.6
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.8e-35 154.5 106 65.1
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 9.1e-32 142.1 87 80.5
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 4.2e-21 106.7 122 53.3
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 4.2e-21 106.7 185 39.5
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 1.7e-14 84.7 202 37.1
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.4e-11 75.1 60 63.3
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.4e-11 75.1 60 63.3
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 1.5e-10 71.6 71 60.6
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 5.7e-10 69.7 60 60.0
Solyc05g150127.1 Solanum lycopersicum HOM05D004710 ORTHO05D005445 3.1e-08 63.9 36 88.9
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 9.2e-08 62.4 50 72.0
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 9.2e-08 62.4 59 61.0
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 5.0e-06 56.6 34 67.6
MCO09G271 Micromonas commoda HOM05D004710 ORTHO05D005445 5.0e-06 56.6 173 27.2


User provided reference genes

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