Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 3.6e-30 134.4 75 100.0
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 2.9e-24 114.8 75 82.7
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 5.0e-24 114.0 75 81.3
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 3.2e-23 111.3 78 82.1
Sopen05g012340 Solanum pennellii HOM05D002385 ORTHO05D002245 2.6e-20 101.7 76 76.3
Solyc05g016060.4 Solanum lycopersicum HOM05D002385 ORTHO05D002245 4.4e-20 100.9 75 77.3
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 1.0e-13 79.7 78 60.3
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 2.3e-13 78.6 81 60.5
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 2.3e-13 78.6 81 60.5
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 2.3e-13 78.6 84 60.7
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 1.2e-12 76.3 49 85.7
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 1.5e-12 75.9 79 59.5
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.5e-12 75.9 78 57.7
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 5.7e-12 73.9 77 58.4
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 7.5e-12 73.6 50 82.0
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 1.3e-11 72.8 77 58.4
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 1.7e-11 72.4 48 81.2
Carub.0004s1351 Capsella rubella HOM05D002385 ORTHO05D002245 3.7e-11 71.2 75 52.0
TPR.G9750 Trifolium pratense HOM05D002385 ORTHO05D002245 3.7e-11 71.2 73 50.7
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 4.8e-11 70.9 88 53.4
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 4.8e-11 70.9 50 78.0
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 8.3e-11 70.1 54 72.2
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.1e-10 69.7 77 57.1
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 1.1e-10 69.7 54 72.2
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.4e-10 69.3 64 64.1
Oeu012375.1 Olea europaea HOM05D002385 ORTHO05D002245 1.4e-10 69.3 78 53.8
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 1.4e-10 69.3 73 56.2
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.8e-10 68.9 81 55.6
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 1.8e-10 68.9 57 68.4
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 1.8e-10 68.9 76 57.9
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.4e-10 68.6 77 58.4
arahy.Tifrunner.gnm1.ann1.3UW96L Arachis hypogaea HOM05D002385 ORTHO05D002245 2.4e-10 68.6 76 55.3
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 2.4e-10 68.6 55 70.9
Psat1g003480 Pisum sativum HOM05D002385 ORTHO05D002245 2.4e-10 68.6 73 50.7
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 2.4e-10 68.6 75 52.0
Ca_03672_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 3.1e-10 68.2 73 52.1
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 3.1e-10 68.2 51 80.4
Nitab4.5_0000019g0190 Nicotiana tabacum HOM05D002385 ORTHO05D002245 3.1e-10 68.2 52 76.9
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 3.1e-10 68.2 57 68.4
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 3.1e-10 68.2 82 54.9
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 3.1e-10 68.2 78 56.4
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 3.1e-10 68.2 74 60.8
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 3.1e-10 68.2 74 60.8
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 4.1e-10 67.8 77 58.4
CSS0047514 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 4.1e-10 67.8 84 59.5
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 4.1e-10 67.8 54 72.2
Phvul.005G057500 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 4.1e-10 67.8 72 52.8
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 5.3e-10 67.4 58 67.2
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 5.3e-10 67.4 49 81.6
Glyma.08G170700 Glycine max HOM05D002385 ORTHO05D002245 5.3e-10 67.4 72 51.4
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 5.3e-10 67.4 73 54.8
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 7.0e-10 67.0 68 52.9
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 7.0e-10 67.0 75 49.3
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 7.0e-10 67.0 78 46.2
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 7.0e-10 67.0 75 49.3
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 7.0e-10 67.0 50 74.0
Medtr2g069400 Medicago truncatula HOM05D002385 ORTHO05D002245 7.0e-10 67.0 73 47.9
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 7.0e-10 67.0 54 70.4
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 7.0e-10 67.0 77 58.4
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 9.1e-10 66.6 75 49.3
DCAR_016934 Daucus carota HOM05D002385 ORTHO05D002245 9.1e-10 66.6 77 58.4
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 9.1e-10 66.6 78 57.7
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 9.1e-10 66.6 50 74.0
HanXRQChr03g0078081 Helianthus annuus HOM05D002385 ORTHO05D002245 1.2e-09 66.2 46 80.4
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 1.2e-09 66.2 50 74.0
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 1.2e-09 66.2 47 63.8
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 1.6e-09 65.9 54 75.9
Glyma.15G256300 Glycine max HOM05D002385 ORTHO05D002245 1.6e-09 65.9 72 50.0
CSS0045060 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 2.0e-09 65.5 78 59.0
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 2.0e-09 65.5 49 75.5
FvH4_6g39680 Fragaria vesca HOM05D002385 ORTHO05D002245 2.0e-09 65.5 68 63.2
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 2.0e-09 65.5 75 61.3
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 2.7e-09 65.1 81 53.1
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.7e-09 65.1 77 51.9
Oeu027273.1 Olea europaea HOM05D002385 ORTHO05D002245 2.7e-09 65.1 52 67.3
FvH4_6g39660 Fragaria vesca HOM05D002385 ORTHO05D002245 3.5e-09 64.7 78 57.7
FAN05G4252 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.5e-09 64.7 78 57.7
FAN14G2541 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.5e-09 64.7 78 57.7
FAN14G3003 Fragaria x ananassa HOM05D002385 ORTHO05D002245 3.5e-09 64.7 78 57.7
Glyma.15G256200 Glycine max HOM05D002385 ORTHO05D002245 3.5e-09 64.7 70 48.6
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 3.5e-09 64.7 49 79.6
Eucgr.A00900 Eucalyptus grandis HOM05D002385 ORTHO05D002245 4.5e-09 64.3 71 54.9
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 4.5e-09 64.3 49 77.6
FAN02G0915 Fragaria x ananassa HOM05D002385 ORTHO05D002245 4.5e-09 64.3 78 57.7
Lj3g0007335 Lotus japonicus HOM05D002385 ORTHO05D002245 4.5e-09 64.3 73 53.4
BcaC09g49159 Brassica carinata HOM05D002385 ORTHO05D002245 5.9e-09 63.9 49 77.6
C01p42010 Brassica napus HOM05D002385 ORTHO05D002245 5.9e-09 63.9 49 77.6
Psat1g003560 Pisum sativum HOM05D002385 ORTHO05D002245 5.9e-09 63.9 74 48.6
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 5.9e-09 63.9 52 76.9
unitig_699.g19631 Utricularia gibba HOM05D002385 ORTHO05D002245 5.9e-09 63.9 81 55.6
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 7.7e-09 63.5 50 70.0
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 7.7e-09 63.5 80 52.5
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 1.0e-08 63.2 75 48.0
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 1.0e-08 63.2 75 48.0
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 1.0e-08 63.2 75 48.0
Migut.M01554 Erythranthe guttata HOM05D002385 ORTHO05D002245 1.0e-08 63.2 80 45.0
RcHm_v2.0_Chr2g0153741 Rosa chinensis HOM05D002385 ORTHO05D002245 1.0e-08 63.2 80 56.2
Sabra06G0015400 Salix brachista HOM05D002385 ORTHO05D002245 1.0e-08 63.2 67 59.7
vmacro09249 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 1.0e-08 63.2 79 57.0
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.0e-08 63.2 48 72.9
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.0e-08 63.2 48 72.9
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 1.3e-08 62.8 49 73.5
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 1.3e-08 62.8 49 73.5
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.3e-08 62.8 72 56.9
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 1.3e-08 62.8 75 48.0
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.7e-08 62.4 72 55.6
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.7e-08 62.4 56 67.9
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 1.7e-08 62.4 56 67.9
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 1.7e-08 62.4 56 67.9
Migut.M00099 Erythranthe guttata HOM05D002385 ORTHO05D002245 1.7e-08 62.4 67 62.7
RcHm_v2.0_Chr2g0153701 Rosa chinensis HOM05D002385 ORTHO05D002245 1.7e-08 62.4 80 55.0
CARHR125980 Cardamine hirsuta HOM05D002385 ORTHO05D002245 2.2e-08 62.0 75 46.7
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 2.2e-08 62.0 55 67.3
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 2.2e-08 62.0 57 54.4
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 2.2e-08 62.0 51 72.5
Carub.0003s2241 Capsella rubella HOM05D002385 ORTHO05D002245 2.9e-08 61.6 49 71.4
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 2.9e-08 61.6 54 66.7
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 2.9e-08 61.6 55 67.3
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 3.8e-08 61.2 75 46.7
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 3.8e-08 61.2 75 46.7
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 3.8e-08 61.2 72 56.9
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 3.8e-08 61.2 49 71.4
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 3.8e-08 61.2 54 66.7
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 5.0e-08 60.8 49 65.3
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 5.0e-08 60.8 49 65.3
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 5.0e-08 60.8 72 47.2
DCAR_013336 Daucus carota HOM05D002385 ORTHO05D002245 5.0e-08 60.8 56 62.5
Lalb_Chr25g0284941 Lupinus albus HOM05D002385 ORTHO05D002245 5.0e-08 60.8 79 48.1
CARHR098150 Cardamine hirsuta HOM05D002385 ORTHO05D002245 6.5e-08 60.5 49 73.5
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 6.5e-08 60.5 80 48.8
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 8.5e-08 60.1 51 68.6
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 8.5e-08 60.1 76 50.0
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 8.5e-08 60.1 82 50.0
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 1.1e-07 59.7 75 45.3
FAN14G0168 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.1e-07 59.7 80 47.5
Actinidia11100 Actinidia chinensis HOM05D003155 ORTHO05D002245 1.5e-07 59.3 50 70.0
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.5e-07 59.3 76 53.9
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 1.5e-07 59.3 76 53.9
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 1.5e-07 59.3 51 66.7
Psat6g029000 Pisum sativum HOM05D002385 ORTHO05D002245 1.5e-07 59.3 74 45.9
TWI34G0572 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 1.5e-07 59.3 87 48.3
Glyma.08G172300 Glycine max HOM05D002385 ORTHO05D002245 1.9e-07 58.9 74 48.6
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 1.9e-07 58.9 80 46.2
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 1.9e-07 58.9 80 46.2
AT2G32210 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 2.5e-07 58.5 75 46.7
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 2.5e-07 58.5 80 41.2
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 2.5e-07 58.5 81 49.4
RcHm_v2.0_Chr2g0153711 Rosa chinensis HOM05D002385 ORTHO05D002245 2.5e-07 58.5 55 63.6
Ca_22650_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 3.2e-07 58.2 51 68.6
Oeu056976.2 Olea europaea HOM05D002385 ORTHO05D002245 3.2e-07 58.2 83 41.0
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 3.2e-07 58.2 53 52.8
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 3.2e-07 58.2 77 49.4
TPR.G9755 Trifolium pratense HOM05D002385 ORTHO05D002245 3.2e-07 58.2 79 50.6
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 4.2e-07 57.8 88 39.8
Duzib133G1087 Durio zibethinus HOM05D002385 ORTHO05D002245 4.2e-07 57.8 53 66.0
Phvul.006G001200 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 4.2e-07 57.8 47 70.2
TPR.G9734 Trifolium pratense HOM05D002385 ORTHO05D002245 4.2e-07 57.8 74 52.7
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 5.5e-07 57.4 83 47.0
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 7.2e-07 57.0 79 43.0
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 7.2e-07 57.0 81 44.4
RcHm_v2.0_Chr2g0153691 Rosa chinensis HOM05D002385 ORTHO05D002245 7.2e-07 57.0 79 54.4
vmacro12336 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 7.2e-07 57.0 84 54.8
A01p32930 Brassica napus HOM05D002385 ORTHO05D002245 9.4e-07 56.6 49 69.4
BraA01t03414Z Brassica rapa HOM05D002385 ORTHO05D002245 9.4e-07 56.6 49 69.4
Glyma.08G171000 Glycine max HOM05D002385 ORTHO05D002245 9.4e-07 56.6 56 48.2
Psat1g011360 Pisum sativum HOM05D002385 ORTHO05D002245 9.4e-07 56.6 74 48.6
QL04p061357 Quercus lobata HOM05D002385 ORTHO05D002245 9.4e-07 56.6 48 68.8
BraA10t42676Z Brassica rapa HOM05D002385 ORTHO05D002245 1.2e-06 56.2 51 54.9
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 1.2e-06 56.2 80 48.8
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 1.2e-06 56.2 55 52.7
TAR627G0329 Trochodendron aralioides HOM05D002385 ORTHO05D002245 1.2e-06 56.2 55 65.5
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 2.1e-06 55.5 49 65.3
CiPaw.11G059900 Carya illinoinensis HOM05D002385 ORTHO05D002245 2.1e-06 55.5 53 50.9
Ca_03673_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 2.1e-06 55.5 56 58.9
Cc05_g00090 Coffea canephora HOM05D002385 ORTHO05D002245 2.1e-06 55.5 81 55.6
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 2.1e-06 55.5 78 50.0
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 2.1e-06 55.5 47 68.1
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 2.1e-06 55.5 79 50.6
BolC5t29144H Brassica oleracea HOM05D002385 ORTHO05D002245 2.7e-06 55.1 77 42.9
Medtr3g081140 Medicago truncatula HOM05D002385 ORTHO05D002245 2.7e-06 55.1 62 58.1
QL04p073225 Quercus lobata HOM05D002385 ORTHO05D002245 2.7e-06 55.1 64 43.8
Gohir.A07G081200 Gossypium hirsutum HOM05D002385 ORTHO05D002245 3.6e-06 54.7 48 68.8
Lsat_1_v5_gn_1_82281 Lactuca sativa HOM05D019240 ORTHO05D002245 3.6e-06 54.7 82 43.9
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 4.7e-06 54.3 50 62.0
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 6.1e-06 53.9 78 43.6
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 6.1e-06 53.9 78 43.6
C05p03670 Brassica napus HOM05D002385 ORTHO05D002245 8.0e-06 53.5 77 42.9
Carub.0001s0465 Capsella rubella HOM05D002385 ORTHO05D002245 8.0e-06 53.5 49 53.1
Thhalv10009262m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 8.0e-06 53.5 77 42.9
Thecc.07G152000 Theobroma cacao HOM05D021429 ORTHO05D022417 8.0e-06 53.5 50 54.0


User provided reference genes

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