Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003159g0080 Nicotiana tabacum HOM05D003960 ORTHO05D004297 2.0e-77 292.4 144 100.0
Nitab4.5_0009849g0010 Nicotiana tabacum HOM05D003960 ORTHO05D004297 8.3e-44 180.6 119 77.3
Sopen02g026730 Solanum pennellii HOM05D003960 ORTHO05D004297 3.4e-37 158.7 119 67.2
Solyc02g082080.1 Solanum lycopersicum HOM05D003960 ORTHO05D004297 2.9e-36 155.6 119 65.5
PGSC0003DMG400013653 Solanum tuberosum HOM05D003960 ORTHO05D004297 4.9e-36 154.8 119 65.5
CAN.G65.51 Capsicum annuum HOM05D003960 ORTHO05D004297 8.3e-36 154.1 121 65.3
Oeu024207.1 Olea europaea HOM05D003960 ORTHO05D004297 3.9e-25 118.6 120 53.3
Cc08_g01000 Coffea canephora HOM05D003960 ORTHO05D004297 2.1e-23 112.8 124 51.6
Oeu018026.1 Olea europaea HOM05D003960 ORTHO05D004297 1.1e-22 110.5 123 49.6
MSTRG.1711 Avicennia marina HOM05D003960 ORTHO05D004297 9.0e-22 107.5 120 51.7
PSO104G0019 Papaver somniferum HOM05D003960 ORTHO05D004297 5.8e-21 104.8 119 52.9
Lsat_1_v5_gn_7_58180 Lactuca sativa HOM05D003960 ORTHO05D004297 1.3e-20 103.6 120 51.7
Nn8g38616 Nelumbo nucifera HOM05D003960 ORTHO05D004297 2.2e-20 102.8 121 51.2
TAR667G0002 Trochodendron aralioides HOM05D003960 ORTHO05D004297 4.9e-20 101.7 121 47.9
Aqoxy7G04097 Aquilegia oxysepala HOM05D003960 ORTHO05D004297 8.4e-20 100.9 119 52.1
SGA_v2.0_scaffold64G21904 Striga asiatica HOM05D003960 ORTHO05D004297 8.4e-20 100.9 120 50.0
ECA236G3206 Erigeron canadensis HOM05D003960 ORTHO05D004297 1.1e-19 100.5 134 45.5
Migut.A00060 Erythranthe guttata HOM05D003960 ORTHO05D004297 1.9e-19 99.8 120 50.0
THA.LOC104810995 Tarenaya hassleriana HOM05D003960 ORTHO05D004297 3.2e-19 99.0 119 51.3
Hma1.2p1_0179F.1_g079470 Hydrangea macrophylla HOM05D003960 ORTHO05D004297 4.2e-19 98.6 123 48.8
Cfa015757 Carpinus fangiana HOM05D003960 ORTHO05D004297 7.1e-19 97.8 122 47.5
HanXRQChr03g0067151 Helianthus annuus HOM05D003960 ORTHO05D004297 7.1e-19 97.8 120 48.3
Peaxi162Scf00486g00012 Petunia axillaris HOM05D003960 ORTHO05D004297 7.1e-19 97.8 77 67.5
Gohir.A06G077200 Gossypium hirsutum HOM05D003960 ORTHO05D004297 9.3e-19 97.4 119 49.6
Nn2g15194 Nelumbo nucifera HOM05D003960 ORTHO05D004297 1.6e-18 96.7 120 46.7
Potri.006G140700 Populus trichocarpa HOM05D003960 ORTHO05D004297 1.6e-18 96.7 119 49.6
Ciclev10009830m.g Citrus clementina HOM05D003960 ORTHO05D004297 2.1e-18 96.3 119 50.4
Manes.03G041100 Manihot esculenta HOM05D003960 ORTHO05D004297 2.1e-18 96.3 119 49.6
CiPaw.16G067200 Carya illinoinensis HOM05D003960 ORTHO05D004297 2.7e-18 95.9 120 49.2
Gohir.D06G076200 Gossypium hirsutum HOM05D003960 ORTHO05D004297 3.5e-18 95.5 119 49.6
Gorai.010G089200 Gossypium raimondii HOM05D003960 ORTHO05D004297 3.5e-18 95.5 119 49.6
Atru.chr7.1719 Acer truncatum HOM05D003960 ORTHO05D004297 4.6e-18 95.1 119 49.6
SGA_v2.0_scaffold169G38715 Striga asiatica HOM05D003960 ORTHO05D004297 6.0e-18 94.7 119 46.2
MSTRG.25994 Avicennia marina HOM05D003960 ORTHO05D004297 1.0e-17 94.0 120 46.7
Sabra06G0110000 Salix brachista HOM05D003960 ORTHO05D004297 1.0e-17 94.0 119 48.7
HPP92_016237 Vanilla planifolia HOM05D003960 ORTHO05D004297 1.0e-17 94.0 120 46.7
Dinv42402 Davidia involucrata HOM05D003960 ORTHO05D004297 1.7e-17 93.2 120 46.7
MD08G1045600 Malus domestica HOM05D003960 ORTHO05D004297 1.7e-17 93.2 139 43.2
BcaC04g19455 Brassica carinata HOM05D003960 ORTHO05D004297 2.3e-17 92.8 120 45.8
Potri.006G219200 Populus trichocarpa HOM05D003960 ORTHO05D004297 3.0e-17 92.4 120 45.0
C09p55580 Brassica napus HOM05D003960 ORTHO05D004297 3.9e-17 92.0 120 45.0
BolC9t58421H Brassica oleracea HOM05D003960 ORTHO05D004297 3.9e-17 92.0 120 45.0
CSS0013785 Camellia sinensis var. sinensis HOM05D003960 ORTHO05D004297 3.9e-17 92.0 129 40.3
Gohir.A13G190100 Gossypium hirsutum HOM05D003960 ORTHO05D004297 5.1e-17 91.7 119 47.1
Thecc.09G075400 Theobroma cacao HOM05D003960 ORTHO05D004297 5.1e-17 91.7 119 47.9
AL6G32200 Arabidopsis lyrata HOM05D003960 ORTHO05D004297 6.6e-17 91.3 119 44.5
Sabra06G0169100 Salix brachista HOM05D003960 ORTHO05D004297 6.6e-17 91.3 121 44.6
unitig_32.g11516 Utricularia gibba HOM05D003960 ORTHO05D004297 6.6e-17 91.3 119 47.9
COL.COLO4_18085 Corchorus olitorius HOM05D003960 ORTHO05D004297 8.7e-17 90.9 119 47.1
Duzib187G1941 Durio zibethinus HOM05D003960 ORTHO05D004297 8.7e-17 90.9 119 47.1
MD15G1048000 Malus domestica HOM05D003960 ORTHO05D004297 8.7e-17 90.9 124 45.2
PSO724G1087 Papaver somniferum HOM05D003960 ORTHO05D004297 8.7e-17 90.9 119 42.9
Sp6g23830 Schrenkiella parvula HOM05D003960 ORTHO05D004297 8.7e-17 90.9 119 42.9
AT5G20650 Arabidopsis thaliana HOM05D003960 ORTHO05D004297 1.1e-16 90.5 119 43.7
MSTRG.14089 Avicennia marina HOM05D003960 ORTHO05D004297 1.1e-16 90.5 119 44.5
BcaB08g36516 Brassica carinata HOM05D003960 ORTHO05D004297 1.1e-16 90.5 120 45.0
A10p19370 Brassica napus HOM05D003960 ORTHO05D004297 1.1e-16 90.5 120 45.0
BraA10t44014Z Brassica rapa HOM05D003960 ORTHO05D004297 1.1e-16 90.5 120 45.0
Aa31LG1G14040 Aethionema arabicum HOM05D003960 ORTHO05D004297 1.5e-16 90.1 119 45.4
CARHR192160 Cardamine hirsuta HOM05D003960 ORTHO05D004297 1.5e-16 90.1 119 43.7
PSO135G0474 Papaver somniferum HOM05D003960 ORTHO05D004297 1.5e-16 90.1 119 42.9
Prupe.1G402400 Prunus persica HOM05D003960 ORTHO05D004297 1.5e-16 90.1 120 45.0
CANSAT25G0735 Cannabis sativa HOM05D003960 ORTHO05D004297 1.9e-16 89.7 119 42.0
Lj7P209T18 Lonicera japonica HOM05D003960 ORTHO05D004297 1.9e-16 89.7 121 42.1
TAR624G1083 Trochodendron aralioides HOM05D003960 ORTHO05D004297 1.9e-16 89.7 129 46.5
Carub.0006s1899 Capsella rubella HOM05D003960 ORTHO05D004297 2.5e-16 89.4 119 43.7
vmacro04769 Vaccinium macrocarpon HOM05D003960 ORTHO05D004297 2.5e-16 89.4 121 43.0
GSVIVG01015065001 Vitis vinifera HOM05D003960 ORTHO05D004297 2.5e-16 89.4 120 46.7
Glyma.14G107100 Glycine max HOM05D003960 ORTHO05D004297 3.3e-16 89.0 120 43.3
Sed0008240 Sechium edule HOM05D003960 ORTHO05D004297 3.3e-16 89.0 119 43.7
MD08G1044900 Malus domestica HOM05D003960 ORTHO05D004297 4.3e-16 88.6 124 44.4
Glyma.17G219400 Glycine max HOM05D003960 ORTHO05D004297 5.6e-16 88.2 122 44.3
Medtr3g105330 Medicago truncatula HOM05D003960 ORTHO05D004297 5.6e-16 88.2 119 42.9
TWI34G1946 Tripterygium wilfordii HOM05D003960 ORTHO05D004297 5.6e-16 88.2 119 42.9
TWI63G0819 Tripterygium wilfordii HOM05D003960 ORTHO05D004297 5.6e-16 88.2 119 46.2
Duzib150G0920 Durio zibethinus HOM05D003960 ORTHO05D004297 7.3e-16 87.8 121 48.8
Thhalv10015467m.g Eutrema salsugineum HOM05D003960 ORTHO05D004297 7.3e-16 87.8 120 44.2
FvH4_2g30830 Fragaria vesca HOM05D003960 ORTHO05D004297 7.3e-16 87.8 119 41.2
FAN24G1040 Fragaria x ananassa HOM05D003960 ORTHO05D004297 7.3e-16 87.8 119 41.2
Lsat_1_v5_gn_8_70441 Lactuca sativa HOM05D003960 ORTHO05D004297 7.3e-16 87.8 122 46.7
AUR62028262 Chenopodium quinoa HOM05D003960 ORTHO05D004297 9.6e-16 87.4 120 45.8
DCAR_001242 Daucus carota HOM05D003960 ORTHO05D004297 9.6e-16 87.4 119 46.2
BcaB05g22823 Brassica carinata HOM05D003960 ORTHO05D004297 1.3e-15 87.0 120 44.2
BcaB05g22824 Brassica carinata HOM05D003960 ORTHO05D004297 1.3e-15 87.0 120 44.2
Gohir.D13G196345 Gossypium hirsutum HOM05D003960 ORTHO05D004297 1.6e-15 86.7 119 45.4
Gorai.013G223700 Gossypium raimondii HOM05D003960 ORTHO05D004297 1.6e-15 86.7 119 45.4
HanXRQChr05g0136461 Helianthus annuus HOM05D003960 ORTHO05D004297 1.6e-15 86.7 121 43.0
A02p06410 Brassica napus HOM05D003960 ORTHO05D004297 3.6e-15 85.5 120 42.5
BraA02t05586Z Brassica rapa HOM05D003960 ORTHO05D004297 3.6e-15 85.5 120 42.5
Lalb_Chr23g0268031 Lupinus albus HOM05D003960 ORTHO05D004297 3.6e-15 85.5 119 43.7
BcaC03g13784 Brassica carinata HOM05D003960 ORTHO05D004297 4.8e-15 85.1 120 41.7
TWI32G1339 Tripterygium wilfordii HOM05D003960 ORTHO05D004297 4.8e-15 85.1 120 42.5
CiPaw.15G090800 Carya illinoinensis HOM05D003960 ORTHO05D004297 6.2e-15 84.7 120 43.3
FAN20G3158 Fragaria x ananassa HOM05D003960 ORTHO05D004297 8.1e-15 84.3 119 40.3
Os09g0440700 Oryza sativa ssp. japonica HOM05D003960 ORTHO05D004297 8.1e-15 84.3 119 42.9
Psat5g033920 Pisum sativum HOM05D003960 ORTHO05D004297 8.1e-15 84.3 119 42.0
Cfa002978 Carpinus fangiana HOM05D003960 ORTHO05D004297 1.4e-14 83.6 119 46.2
RcHm_v2.0_Chr6g0312031 Rosa chinensis HOM05D003960 ORTHO05D004297 1.4e-14 83.6 119 38.7
SHI27998 Sapria himalayana HOM05D003960 ORTHO05D004297 1.4e-14 83.6 119 42.0
ATR0598G332 Amborella trichopoda HOM05D003960 ORTHO05D004297 1.8e-14 83.2 120 45.8
FAN15G2682 Fragaria x ananassa HOM05D003960 ORTHO05D004297 1.8e-14 83.2 119 39.5
ClCG08G009750 Citrullus lanatus HOM05D003960 ORTHO05D004297 3.1e-14 82.4 119 41.2
Sc06g0000100 Simmondsia chinensis HOM05D003960 ORTHO05D004297 3.1e-14 82.4 119 44.5
CiPaw.05G156700 Carya illinoinensis HOM05D003960 ORTHO05D004297 4.0e-14 82.0 120 42.5
CiPaw.05G157200 Carya illinoinensis HOM05D003960 ORTHO05D004297 4.0e-14 82.0 120 42.5
CsaV3_6G031870 Cucumis sativus L. HOM05D003960 ORTHO05D004297 5.3e-14 81.6 119 41.2
FAN27G1345 Fragaria x ananassa HOM05D003960 ORTHO05D004297 5.3e-14 81.6 119 38.7
PGR044G2188 Punica granatum HOM05D003960 ORTHO05D004297 5.3e-14 81.6 119 42.0
MELO3C011494.2 Cucumis melo HOM05D003960 ORTHO05D004297 6.9e-14 81.3 119 41.2
PGR142G3331 Punica granatum HOM05D003960 ORTHO05D004297 6.9e-14 81.3 123 40.7
TPR.G3570 Trifolium pratense HOM05D003960 ORTHO05D004297 9.0e-14 80.9 119 39.5
Zm00001eb100190 Zea mays HOM05D003960 ORTHO05D004297 9.0e-14 80.9 123 41.5
Ca_15825_v3 Cicer arietinum L. HOM05D003960 ORTHO05D004297 1.2e-13 80.5 119 39.5
Ca_28263_v3 Cicer arietinum L. HOM05D003960 ORTHO05D004297 1.2e-13 80.5 119 39.5
Gorai.001G019400 Gossypium raimondii HOM05D003960 ORTHO05D004297 1.2e-13 80.5 119 40.3
TPR.G38913 Trifolium pratense HOM05D003960 ORTHO05D004297 1.2e-13 80.5 120 43.3
Zm00001eb314090 Zea mays HOM05D003960 ORTHO05D004297 1.2e-13 80.5 124 40.3
SalBow4G1627 Salvia bowleyana HOM05D003960 ORTHO05D004297 1.5e-13 80.1 119 40.3
CiPaw.03G205100 Carya illinoinensis HOM05D003960 ORTHO05D004297 2.0e-13 79.7 119 40.3
Gohir.A07G018900 Gossypium hirsutum HOM05D003960 ORTHO05D004297 2.0e-13 79.7 119 40.3
COL.COLO4_21157 Corchorus olitorius HOM05D003960 ORTHO05D004297 4.5e-13 78.6 123 41.5
Psat6g023040 Pisum sativum HOM05D003960 ORTHO05D004297 4.5e-13 78.6 120 42.5
Atru.chr7.1831 Acer truncatum HOM05D003960 ORTHO05D004297 5.8e-13 78.2 119 42.0
Gohir.D07G018700 Gossypium hirsutum HOM05D003960 ORTHO05D004297 5.8e-13 78.2 119 39.5
Manes.16G086700 Manihot esculenta HOM05D003960 ORTHO05D004297 7.6e-13 77.8 121 38.8
Medtr1g015000 Medicago truncatula HOM05D003960 ORTHO05D004297 7.6e-13 77.8 120 40.8
Lj1g0025356 Lotus japonicus HOM05D003960 ORTHO05D004297 9.9e-13 77.4 119 39.5
Eucgr.J01772 Eucalyptus grandis HOM05D003960 ORTHO05D004297 1.3e-12 77.0 119 41.2
Phvul.009G083400 Phaseolus vulgaris HOM05D003960 ORTHO05D004297 1.7e-12 76.6 119 38.7
QL11p001038 Quercus lobata HOM05D003960 ORTHO05D004297 2.2e-12 76.3 119 42.0
MBI19_g09927_MAGBIO Magnolia biondii HOM05D003960 ORTHO05D004297 4.9e-12 75.1 77 59.7
Ca_13094_v3 Cicer arietinum L. HOM05D003960 ORTHO05D004297 8.4e-12 74.3 119 38.7
Hma1.2p1_0278F.1_g111800 Hydrangea macrophylla HOM05D003960 ORTHO05D004297 8.4e-12 74.3 120 41.7
VMungo1309G0846 Vigna mungo HOM05D003960 ORTHO05D004297 1.4e-11 73.6 119 37.0
Thecc.09G065300 Theobroma cacao HOM05D003960 ORTHO05D004297 2.4e-11 72.8 121 38.0
VMungo1309G2154 Vigna mungo HOM05D003960 ORTHO05D004297 2.4e-11 72.8 119 37.0
EL10Ac8g19048 Beta vulgaris HOM05D003960 ORTHO05D004297 3.2e-11 72.4 142 40.8
Duzib187G0159 Durio zibethinus HOM05D003960 ORTHO05D004297 5.4e-11 71.6 121 38.0
Glyma.06G057400 Glycine max HOM05D003960 ORTHO05D004297 1.2e-10 70.5 119 36.1
RhsimUnG0073900 Rhododendron simsii HOM05D003960 ORTHO05D004297 1.2e-10 70.5 119 36.1
GSVIVG01035488001 Vitis vinifera HOM05D000633 ORTHO05D000477 2.7e-10 69.3 103 42.7
Duzib150G1216 Durio zibethinus HOM05D003960 ORTHO05D004297 3.5e-10 68.9 121 37.2
vmacro17132 Vaccinium macrocarpon HOM05D003960 ORTHO05D004297 4.6e-10 68.6 122 37.7
Actinidia39652 Actinidia chinensis HOM05D003960 ORTHO05D004297 6.0e-10 68.2 110 41.8
Eucgr.K01930 Eucalyptus grandis HOM05D003960 ORTHO05D004297 6.0e-10 68.2 110 40.0
Lj5g0010758 Lotus japonicus HOM05D003960 ORTHO05D004297 6.0e-10 68.2 119 39.5
Gorai.013G221100 Gossypium raimondii HOM05D003960 ORTHO05D004297 7.9e-10 67.8 119 38.7
Glyma.04G057000 Glycine max HOM05D003960 ORTHO05D004297 1.3e-09 67.0 119 33.6
SEGI_35471 Sequoiadendron giganteum HOM05D003960 ORTHO05D004297 3.0e-09 65.9 119 35.3
Gohir.A13G188100 Gossypium hirsutum HOM05D003960 ORTHO05D004297 3.9e-09 65.5 119 38.7
Pp3c7_1360 Physcomitrium patens HOM05D003960 ORTHO05D004297 8.7e-09 64.3 116 37.9
PSO421G0342 Papaver somniferum HOM05D003960 ORTHO05D004297 1.9e-08 63.2 77 53.2
Eucgr.L03350 Eucalyptus grandis HOM05D003960 ORTHO05D004297 2.5e-08 62.8 110 39.1
Mapoly0011s0109 Marchantia polymorpha HOM05D003960 ORTHO05D004297 3.3e-08 62.4 116 38.8
C03p11710 Brassica napus HOM05D003960 ORTHO05D004297 7.4e-08 61.2 115 36.5
BolC3t13642H Brassica oleracea HOM05D003960 ORTHO05D004297 7.4e-08 61.2 112 37.5
CANSAT56G3391 Cannabis sativa HOM05D003960 ORTHO05D004297 2.8e-07 59.3 118 35.6
Os08g0455900 Oryza sativa ssp. japonica HOM05D003960 ORTHO05D004297 2.8e-07 59.3 144 32.6
SEGI_26542 Sequoiadendron giganteum HOM05D003960 ORTHO05D004297 4.8e-07 58.5 123 34.1
Eucgr.B00068 Eucalyptus grandis HOM05D003960 ORTHO05D004297 1.4e-06 57.0 112 36.6
HanXRQChr06g0171901 Helianthus annuus HOM05D003960 ORTHO05D004297 1.4e-06 57.0 75 44.0
AagrBONN_evm.TU.Sc2ySwM_228.672 Anthoceros agrestis HOM05D003960 ORTHO05D004297 2.4e-06 56.2 120 34.2
Eucgr.C03322 Eucalyptus grandis HOM05D003960 ORTHO05D004297 3.1e-06 55.8 57 52.6


User provided reference genes

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