Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003155g0020 Nicotiana tabacum HOM05D006963 ORTHO05D008783 0.0e+00 2573.1 1331 100.0
Nitab4.5_0001163g0050 Nicotiana tabacum HOM05D006963 ORTHO05D008783 0.0e+00 2105.5 1277 86.5
PGSC0003DMG400007133 Solanum tuberosum HOM05D006963 ORTHO05D008783 0.0e+00 2021.5 1306 82.5
Sopen06g031250 Solanum pennellii HOM05D006963 ORTHO05D008783 0.0e+00 1989.2 1292 82.0
Solyc06g074810.3 Solanum lycopersicum HOM05D006963 ORTHO05D008783 0.0e+00 1987.2 1292 81.8
CAN.G1432.10 Capsicum annuum HOM05D006963 ORTHO05D008783 0.0e+00 1781.5 1169 80.8
Peaxi162Scf00114g00812 Petunia axillaris HOM05D006963 ORTHO05D008783 0.0e+00 1717.6 1275 73.4
Cc01_g10290 Coffea canephora HOM05D006963 ORTHO05D008783 0.0e+00 1308.9 1292 58.0
vmacro14391 Vaccinium macrocarpon HOM05D006963 ORTHO05D008783 0.0e+00 1225.7 1280 55.0
Rhsim01G0210700 Rhododendron simsii HOM05D006963 ORTHO05D008783 0.0e+00 1212.2 1287 56.6
Thecc.09G298600 Theobroma cacao HOM05D006963 ORTHO05D008783 0.0e+00 1205.3 1301 53.4
Atru.chr3.3517 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1203.3 1284 55.3
Atru.chr3.3511 Acer truncatum HOM05D006963 ORTHO05D008783 0.0e+00 1201.8 1284 55.2
CiPaw.13G122900 Carya illinoinensis HOM05D006963 ORTHO05D008783 0.0e+00 1187.6 1274 54.3
MD03G1129000 Malus domestica HOM05D006963 ORTHO05D008783 0.0e+00 1185.6 1289 53.9
QL01p015018 Quercus lobata HOM05D006963 ORTHO05D008783 0.0e+00 1184.9 1250 54.9
Prupe.6G112700 Prunus persica HOM05D006963 ORTHO05D008783 0.0e+00 1182.2 1248 54.7
Cfa010289 Carpinus fangiana HOM05D006963 ORTHO05D008783 0.0e+00 1179.9 1297 53.7
RcHm_v2.0_Chr5g0056861 Rosa chinensis HOM05D006963 ORTHO05D008783 0.0e+00 1177.5 1285 53.0
Manes.04G012900 Manihot esculenta HOM05D006963 ORTHO05D008783 0.0e+00 1175.6 1299 53.4
Gohir.A13G223800 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1174.1 1300 52.8
Gorai.013G259300 Gossypium raimondii HOM05D006963 ORTHO05D008783 0.0e+00 1172.9 1300 52.9
FAN25G3586 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1171.4 1305 53.9
Ciclev10027698m.g Citrus clementina HOM05D006963 ORTHO05D008783 0.0e+00 1167.5 1283 53.7
Haze_23703 Corylus avellana HOM05D006963 ORTHO05D008783 0.0e+00 1166.4 1296 53.8
DCAR_018766 Daucus carota HOM05D006963 ORTHO05D008783 0.0e+00 1165.6 1278 54.5
FvH4_3g30640 Fragaria vesca HOM05D006963 ORTHO05D008783 0.0e+00 1163.3 1246 53.9
FAN21G1782 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1157.1 1294 53.9
CSS0000606 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 0.0e+00 1153.7 1122 58.4
MSTRG.18703 Avicennia marina HOM05D006963 ORTHO05D008783 0.0e+00 1151.7 1243 53.5
Gohir.D13G228600 Gossypium hirsutum HOM05D006963 ORTHO05D008783 0.0e+00 1151.3 1300 52.5
Potri.009G005300 Populus trichocarpa HOM05D006963 ORTHO05D008783 0.0e+00 1143.3 1287 53.8
FAN11G1352 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1141.7 1298 53.5
Duzib168G1517 Durio zibethinus HOM05D006963 ORTHO05D008783 0.0e+00 1139.0 1304 51.3
FAN16G1993 Fragaria x ananassa HOM05D006963 ORTHO05D008783 0.0e+00 1135.9 1240 53.0
Glyma.13G322000 Glycine max HOM05D006963 ORTHO05D008783 0.0e+00 1132.5 1237 53.4
arahy.Tifrunner.gnm1.ann1.5C5N68 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1129.0 1306 52.1
arahy.Tifrunner.gnm1.ann1.10EEU4 Arachis hypogaea HOM05D006963 ORTHO05D008783 0.0e+00 1125.9 1313 51.9
CANSAT64G0534 Cannabis sativa HOM05D006963 ORTHO05D008783 0.0e+00 1123.6 1302 51.2
CsaV3_6G014380 Cucumis sativus L. HOM05D006963 ORTHO05D008783 0.0e+00 1112.1 1298 50.5
MELO3C026954.2 Cucumis melo HOM05D006963 ORTHO05D008783 0.0e+00 1109.0 1299 51.7
Phvul.005G130400 Phaseolus vulgaris HOM05D006963 ORTHO05D008783 0.0e+00 1104.4 1252 51.7
Sed0000311 Sechium edule HOM05D006963 ORTHO05D008783 0.0e+00 1103.6 1292 51.5
Lalb_Chr24g0394941 Lupinus albus HOM05D006963 ORTHO05D008783 0.0e+00 1103.2 1234 52.6
ClCG02G021610 Citrullus lanatus HOM05D006963 ORTHO05D008783 0.0e+00 1101.7 1320 50.9
Ca_01706_v3 Cicer arietinum L. HOM05D006963 ORTHO05D008783 0.0e+00 1100.9 1249 51.4
Lj3g0023334 Lotus japonicus HOM05D006963 ORTHO05D008783 0.0e+00 1100.9 1234 52.2
Sabra09G0002400 Salix brachista HOM05D006963 ORTHO05D008783 0.0e+00 1096.6 1291 52.0
Medtr2g084285 Medicago truncatula HOM05D006963 ORTHO05D008783 0.0e+00 1090.9 1237 51.7
COL.COLO4_19194 Corchorus olitorius HOM05D006963 ORTHO05D008783 0.0e+00 1083.6 1215 51.9
VMungo1080G0719 Vigna mungo HOM05D006963 ORTHO05D008783 0.0e+00 1081.2 1245 51.0
Lj2A1007T38 Lonicera japonica HOM05D006963 ORTHO05D008783 9.1e-312 1074.3 1062 58.3
Psat5g253040 Pisum sativum HOM05D006963 ORTHO05D008783 1.2e-309 1067.0 1238 50.2
Migut.D02292 Erythranthe guttata HOM05D006963 ORTHO05D008783 1.0e-305 1053.9 1270 51.3
EL10Ac9g22623 Beta vulgaris HOM05D006963 ORTHO05D008783 1.3e-305 1053.5 1310 49.8
ECA248G2820 Erigeron canadensis HOM05D006963 ORTHO05D008783 1.1e-304 1050.4 1238 51.5
Sabra04G0147300 Salix brachista HOM05D006963 ORTHO05D008783 1.9e-304 1049.7 1288 50.5
TWI79G0599 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 1.1e-302 1043.9 1297 49.3
Aqoxy1G01103 Aquilegia oxysepala HOM05D006963 ORTHO05D008783 1.2e-301 1040.4 1300 48.5
TPR.G21046 Trifolium pratense HOM05D006963 ORTHO05D008783 1.0e-300 1037.3 1271 49.6
Eucgr.J00389 Eucalyptus grandis HOM05D006963 ORTHO05D008783 3.2e-299 1032.3 1240 49.5
HanXRQChr11g0346501 Helianthus annuus HOM05D006963 ORTHO05D008783 3.5e-298 1028.9 1276 50.6
TAR369G1146 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.8e-297 1026.5 1247 49.6
Lsat_1_v5_gn_1_64681 Lactuca sativa HOM05D006963 ORTHO05D008783 8.7e-297 1024.2 1285 48.5
PGR119G1224 Punica granatum HOM05D006963 ORTHO05D008783 4.3e-296 1021.9 1288 49.2
Sc06g0010790 Simmondsia chinensis HOM05D006963 ORTHO05D008783 1.8e-294 1016.5 1303 47.7
PSO339G1013 Papaver somniferum HOM05D006963 ORTHO05D008783 5.9e-293 1011.5 1303 47.9
PSO063G0444 Papaver somniferum HOM05D006963 ORTHO05D008783 7.2e-291 1004.6 1301 48.1
MBI13_g24960_MAGBIO Magnolia biondii HOM05D006963 ORTHO05D008783 2.2e-287 993.0 1301 46.9
Aa31LG5G7960 Aethionema arabicum HOM05D006963 ORTHO05D008783 6.3e-287 991.5 1276 46.7
SGA_v2.0_scaffold27G11571 Striga asiatica HOM05D006963 ORTHO05D008783 3.9e-281 972.2 1278 47.0
AL4G21950 Arabidopsis lyrata HOM05D006963 ORTHO05D008783 9.7e-280 967.6 1278 46.5
Dinv16225 Davidia involucrata HOM05D006963 ORTHO05D008783 1.3e-279 967.2 851 65.2
GSVIVG01031463001 Vitis vinifera HOM05D006963 ORTHO05D008783 4.1e-278 962.2 1287 47.2
Hund08356 Selenicereus undatus HOM05D006963 ORTHO05D008783 5.9e-277 958.4 1306 46.8
Ah.01g003350 Amaranthus hybridus HOM05D006963 ORTHO05D008783 1.6e-274 950.3 1250 46.6
AUR62014974 Chenopodium quinoa HOM05D006963 ORTHO05D008783 2.1e-258 896.7 1175 47.1
AUR62029159 Chenopodium quinoa HOM05D006963 ORTHO05D008783 6.8e-257 891.7 1095 49.1
CARHR121070 Cardamine hirsuta HOM05D006963 ORTHO05D008783 4.1e-254 882.5 1105 48.1
Cpa.g.sc1.5 Carica papaya HOM05D006963 ORTHO05D008783 1.5e-248 864.0 1295 44.6
Oeu008360.1 Olea europaea HOM05D006963 ORTHO05D008783 2.0e-240 837.0 1108 46.0
Glyma.12G178700 Glycine max HOM05D006963 ORTHO05D008783 3.0e-236 823.2 729 62.0
ATR0329G003 Amborella trichopoda HOM05D006963 ORTHO05D008783 1.4e-233 814.3 1339 40.9
Os02g0823800 Oryza sativa ssp. japonica HOM05D006963 ORTHO05D008783 9.2e-214 748.4 1238 40.1
TWI79G0699 Tripterygium wilfordii HOM05D006963 ORTHO05D008783 1.6e-213 747.7 811 54.6
Zm00001eb190880 Zea mays HOM05D006963 ORTHO05D008783 1.3e-212 744.6 1288 39.6
SEGI_09379 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 3.0e-196 690.3 1212 39.7
HPP92_025769 Vanilla planifolia HOM05D006963 ORTHO05D008783 3.2e-190 670.2 1037 40.3
unitig_899.g15359 Utricularia gibba HOM05D006963 ORTHO05D008783 1.4e-172 611.7 1235 35.7
Cc00_g22940 Coffea canephora HOM05D006963 ORTHO05D008783 9.1e-169 599.0 658 50.3
Mapoly0011s0199 Marchantia polymorpha HOM05D006963 ORTHO05D008783 5.3e-153 546.6 1267 34.0
AagrBONN_evm.TU.Sc2ySwM_344.4789 Anthoceros agrestis HOM05D006963 ORTHO05D008783 8.3e-138 496.1 1133 34.5
Pp3c19_6480 Physcomitrium patens HOM05D006963 ORTHO05D008783 2.0e-128 464.9 1294 32.1
CDE04G1589 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 1.5e-126 458.8 653 44.9
Dinv16223 Davidia involucrata HOM05D006963 ORTHO05D008783 9.6e-94 349.7 438 46.8
Actinidia20425 Actinidia chinensis HOM05D006963 ORTHO05D008783 1.1e-89 336.3 444 49.8
Glyma.12G178600 Glycine max HOM05D006963 ORTHO05D008783 2.4e-76 292.0 442 40.3
SEGI_31087 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 6.1e-64 250.8 553 32.7
CBR_g8254 Chara braunii HOM05D006963 ORTHO05D008783 1.0e-63 250.0 1313 26.7
CDE04G0208 Ceratophyllum demersum HOM05D006963 ORTHO05D008783 5.1e-55 221.1 445 35.3
CSS0014134 Camellia sinensis var. sinensis HOM05D006963 ORTHO05D008783 1.6e-35 156.4 180 52.2
CAN.G1432.11 Capsicum annuum HOM05D006963 ORTHO05D008783 3.8e-34 151.8 72 95.8
Oeu008361.1 Olea europaea HOM05D006963 ORTHO05D008783 1.1e-33 150.2 155 55.5
Dinv29380 Davidia involucrata HOM05D006963 ORTHO05D008783 2.1e-32 146.0 179 52.0
Nn2g13854 Nelumbo nucifera HOM05D006963 ORTHO05D008783 6.8e-31 141.0 120 59.2
TAR623G1253 Trochodendron aralioides HOM05D006963 ORTHO05D008783 2.0e-27 129.4 200 41.5
Psat0s1214g0160 Pisum sativum HOM05D006963 ORTHO05D008783 8.8e-23 114.0 90 55.6
SEGI_19036 Sequoiadendron giganteum HOM05D006963 ORTHO05D008783 1.5e-22 113.2 90 57.8
arahy.Tifrunner.gnm1.ann1.WJC7CQ Arachis hypogaea HOM05D006963 ORTHO05D008783 4.4e-22 111.7 308 30.8
arahy.Tifrunner.gnm1.ann1.YZCM4H Arachis hypogaea HOM05D006963 ORTHO05D008783 9.2e-20 104.0 272 30.9
MD11G1148100 Malus domestica HOM05D006963 ORTHO05D008783 6.6e-18 97.8 106 53.8
TAR623G0866 Trochodendron aralioides HOM05D006963 ORTHO05D008783 1.9e-17 96.3 82 56.1
TAR623G0981 Trochodendron aralioides HOM05D006963 ORTHO05D008783 3.3e-17 95.5 138 38.4
Cre07.g347700 Chlamydomonas reinhardtii HOM05D006963 ORTHO05D141144 1.8e-07 63.2 136 30.1


User provided reference genes

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