Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003152g0160 Nicotiana tabacum HOM05D000833 ORTHO05D286188 1.4e-53 212.6 105 100.0
Sopen08g001330 Solanum pennellii HOM05D000833 ORTHO05D000969 4.4e-10 68.2 45 75.6
Potri.003G098200 Populus trichocarpa HOM05D000833 ORTHO05D000969 5.7e-10 67.8 44 72.7
Solyc08g005310.4 Solanum lycopersicum HOM05D000833 ORTHO05D000969 9.8e-10 67.0 45 73.3
PGSC0003DMG400018502 Solanum tuberosum HOM05D000833 ORTHO05D000969 1.3e-09 66.6 45 73.3
CAN.G137.25 Capsicum annuum HOM05D000833 ORTHO05D000969 1.7e-09 66.2 45 73.3
Gohir.A12G205300 Gossypium hirsutum HOM05D000833 ORTHO05D000969 1.7e-09 66.2 45 71.1
Gohir.D12G207700 Gossypium hirsutum HOM05D000833 ORTHO05D000969 1.7e-09 66.2 45 71.1
Peaxi162Scf00045g00324 Petunia axillaris HOM05D000833 ORTHO05D000969 1.7e-09 66.2 45 73.3
Gorai.008G223200 Gossypium raimondii HOM05D000833 ORTHO05D000969 2.2e-09 65.9 45 71.1
Lsat_1_v5_gn_6_17640 Lactuca sativa HOM05D000833 ORTHO05D000969 2.2e-09 65.9 48 66.7
Sabra03G0066600 Salix brachista HOM05D000833 ORTHO05D000969 2.2e-09 65.9 44 70.5
COL.COLO4_16916 Corchorus olitorius HOM05D000833 ORTHO05D000969 2.8e-09 65.5 45 68.9
TPR.G19469 Trifolium pratense HOM05D000833 ORTHO05D000969 3.7e-09 65.1 54 55.6
TAR375G0323 Trochodendron aralioides HOM05D000833 ORTHO05D000969 3.7e-09 65.1 45 71.1
Glyma.01G011200 Glycine max HOM05D000833 ORTHO05D000969 4.9e-09 64.7 49 63.3
Glyma.09G209900 Glycine max HOM05D000833 ORTHO05D000969 4.9e-09 64.7 49 63.3
Lj2g0010639 Lotus japonicus HOM05D000833 ORTHO05D000969 4.9e-09 64.7 49 63.3
Medtr5g027970 Medicago truncatula HOM05D000833 ORTHO05D000969 4.9e-09 64.7 49 63.3
Potri.001G135300 Populus trichocarpa HOM05D000833 ORTHO05D000969 4.9e-09 64.7 44 70.5
Gohir.D08G173800 Gossypium hirsutum HOM05D000833 ORTHO05D000969 6.3e-09 64.3 45 66.7
HanXRQChr17g0558101 Helianthus annuus HOM05D000833 ORTHO05D000969 6.3e-09 64.3 50 62.0
Psat2g139960 Pisum sativum HOM05D000833 ORTHO05D000969 6.3e-09 64.3 49 63.3
Cc08_g03810 Coffea canephora HOM05D000833 ORTHO05D000969 8.3e-09 63.9 45 66.7
Duzib205G0008 Durio zibethinus HOM05D000833 ORTHO05D000969 8.3e-09 63.9 45 68.9
ECA233G4318 Erigeron canadensis HOM05D000833 ORTHO05D000969 8.3e-09 63.9 47 68.1
Sabra01G0104700 Salix brachista HOM05D000833 ORTHO05D000969 8.3e-09 63.9 44 70.5
Thecc.03G311800 Theobroma cacao HOM05D000833 ORTHO05D000969 8.3e-09 63.9 43 69.8
Duzib068G0149 Durio zibethinus HOM05D000833 ORTHO05D000969 1.1e-08 63.5 45 66.7
Cpa.g.sc16.9 Carica papaya HOM05D000833 ORTHO05D000969 1.4e-08 63.2 54 59.3
FvH4_5g23320 Fragaria vesca HOM05D000833 ORTHO05D000969 1.4e-08 63.2 45 68.9
FAN04G0207 Fragaria x ananassa HOM05D000833 ORTHO05D000969 1.4e-08 63.2 45 68.9
FAN08G1149 Fragaria x ananassa HOM05D000833 ORTHO05D000969 1.4e-08 63.2 45 68.9
FAN18G0895 Fragaria x ananassa HOM05D000833 ORTHO05D000969 1.4e-08 63.2 45 68.9
FAN18G3395 Fragaria x ananassa HOM05D000833 ORTHO05D000969 1.4e-08 63.2 45 68.9
Nn3g19356 Nelumbo nucifera HOM05D000833 ORTHO05D000969 1.4e-08 63.2 57 57.9
RcHm_v2.0_Chr7g0212271 Rosa chinensis HOM05D000833 ORTHO05D000969 1.4e-08 63.2 45 68.9
Gorai.004G181500 Gossypium raimondii HOM05D000833 ORTHO05D000969 1.8e-08 62.8 45 66.7
Manes.15G192700 Manihot esculenta HOM05D000833 ORTHO05D000969 1.8e-08 62.8 45 68.9
TWI60G0715 Tripterygium wilfordii HOM05D000833 ORTHO05D000969 1.8e-08 62.8 43 69.8
VMungo1215G1279 Vigna mungo HOM05D000833 ORTHO05D000969 1.8e-08 62.8 49 63.3
Aa31LG2G14120 Aethionema arabicum HOM05D000833 ORTHO05D000969 2.4e-08 62.4 50 58.0
arahy.Tifrunner.gnm1.ann1.HQ8ILA Arachis hypogaea HOM05D000833 ORTHO05D000969 2.4e-08 62.4 48 64.6
arahy.Tifrunner.gnm1.ann1.X0V096 Arachis hypogaea HOM05D000833 ORTHO05D000969 2.4e-08 62.4 48 64.6
CANSAT21G0221 Cannabis sativa HOM05D000833 ORTHO05D000969 2.4e-08 62.4 45 66.7
Ciclev10000243m.g Citrus clementina HOM05D000833 ORTHO05D000969 2.4e-08 62.4 44 68.2
FAN13G2180 Fragaria x ananassa HOM05D000833 ORTHO05D000969 2.4e-08 62.4 43 69.8
Phvul.002G134200 Phaseolus vulgaris HOM05D000833 ORTHO05D000969 2.4e-08 62.4 49 63.3
Duzib084G0590 Durio zibethinus HOM05D000833 ORTHO05D000969 3.1e-08 62.0 43 67.4
HanXRQChr08g0227081 Helianthus annuus HOM05D000833 ORTHO05D000969 3.1e-08 62.0 47 66.0
Peaxi162Scf00052g00332 Petunia axillaris HOM05D000833 ORTHO05D000969 3.1e-08 62.0 45 66.7
QL12p000143 Quercus lobata HOM05D000833 ORTHO05D000969 3.1e-08 62.0 43 67.4
PGSC0003DMG400009320 Solanum tuberosum HOM05D000833 ORTHO05D000969 3.1e-08 62.0 57 57.9
GSVIVG01013015001 Vitis vinifera HOM05D000833 ORTHO05D000969 3.1e-08 62.0 45 66.7
Actinidia18139 Actinidia chinensis HOM05D000833 ORTHO05D000969 4.1e-08 61.6 45 66.7
MD06G1025000 Malus domestica HOM05D000833 ORTHO05D000969 4.1e-08 61.6 43 67.4
Prupe.5G026100 Prunus persica HOM05D000833 ORTHO05D000969 4.1e-08 61.6 43 67.4
SalBow8G2766 Salvia bowleyana HOM05D000833 ORTHO05D000969 4.1e-08 61.6 45 68.9
vmacro14208 Vaccinium macrocarpon HOM05D000833 ORTHO05D000969 4.1e-08 61.6 45 66.7
CAN.G773.24 Capsicum annuum HOM05D000833 ORTHO05D000969 7.0e-08 60.8 57 56.1
Nitab4.5_0005370g0010 Nicotiana tabacum HOM05D000833 ORTHO05D000969 7.0e-08 60.8 45 66.7
SGA_v2.0_scaffold144G35859 Striga asiatica HOM05D000833 ORTHO05D000969 7.0e-08 60.8 41 73.2
Atru.chr6.1543 Acer truncatum HOM05D000833 ORTHO05D000969 9.2e-08 60.5 45 66.7
MSTRG.1793 Avicennia marina HOM05D000833 ORTHO05D000969 9.2e-08 60.5 54 59.3
CAN.G884.16 Capsicum annuum HOM05D000833 ORTHO05D000969 9.2e-08 60.5 45 68.9
Dinv06914 Davidia involucrata HOM05D000833 ORTHO05D000969 9.2e-08 60.5 45 62.2
SalBow1G1157 Salvia bowleyana HOM05D000833 ORTHO05D000969 9.2e-08 60.5 45 64.4
SalBow1G2011 Salvia bowleyana HOM05D000833 ORTHO05D000969 9.2e-08 60.5 45 64.4
Sc22g0001850 Simmondsia chinensis HOM05D000833 ORTHO05D000969 9.2e-08 60.5 43 67.4
Aqoxy3G02140 Aquilegia oxysepala HOM05D000833 ORTHO05D000969 1.2e-07 60.1 55 54.5
Haze_08127 Corylus avellana HOM05D000833 ORTHO05D000969 1.2e-07 60.1 43 67.4
Nitab4.5_0000301g0090 Nicotiana tabacum HOM05D000833 ORTHO05D000969 1.2e-07 60.1 45 66.7
Rhsim07G0134100 Rhododendron simsii HOM05D000833 ORTHO05D000969 1.2e-07 60.1 80 43.8
BcaB03g13778 Brassica carinata HOM05D000833 ORTHO05D000969 1.6e-07 59.7 50 62.0
CSS0017013 Camellia sinensis var. sinensis HOM05D000833 ORTHO05D000969 1.6e-07 59.7 45 64.4
CSS0020519 Camellia sinensis var. sinensis HOM05D000833 ORTHO05D000969 1.6e-07 59.7 45 64.4
CSS0025617 Camellia sinensis var. sinensis HOM05D000833 ORTHO05D000969 1.6e-07 59.7 45 64.4
Dinv29019 Davidia involucrata HOM05D000833 ORTHO05D000969 1.6e-07 59.7 45 64.4
MSTRG.13898 Avicennia marina HOM05D000833 ORTHO05D000969 2.0e-07 59.3 46 67.4
Lalb_Chr09g0325371 Lupinus albus HOM05D000833 ORTHO05D000969 2.0e-07 59.3 45 64.4
SGA_v2.0_scaffold111G31386 Striga asiatica HOM05D000833 ORTHO05D000969 2.0e-07 59.3 47 63.8
THA.LOC104814406 Tarenaya hassleriana HOM05D000833 ORTHO05D000969 2.0e-07 59.3 43 67.4
BcaB07g32848 Brassica carinata HOM05D000833 ORTHO05D000969 2.7e-07 58.9 50 60.0
A05p25340 Brassica napus HOM05D000833 ORTHO05D000969 2.7e-07 58.9 45 62.2
BraA05t21419Z Brassica rapa HOM05D000833 ORTHO05D000969 2.7e-07 58.9 45 62.2
AUR62018619 Chenopodium quinoa HOM05D000833 ORTHO05D000969 2.7e-07 58.9 57 54.4
CiPaw.12G069500 Carya illinoinensis HOM05D000833 ORTHO05D000969 3.5e-07 58.5 42 66.7
AL1G46020 Arabidopsis lyrata HOM05D000833 ORTHO05D000969 4.5e-07 58.2 42 66.7
BcaC05g27217 Brassica carinata HOM05D000833 ORTHO05D000969 4.5e-07 58.2 42 66.7
BcaC05g27939 Brassica carinata HOM05D000833 ORTHO05D000969 4.5e-07 58.2 42 66.7
A09p34360 Brassica napus HOM05D000833 ORTHO05D000969 4.5e-07 58.2 42 66.7
C05p31250 Brassica napus HOM05D000833 ORTHO05D000969 4.5e-07 58.2 42 66.7
C05p39420 Brassica napus HOM05D000833 ORTHO05D000969 4.5e-07 58.2 42 66.7
BolC5t31850H Brassica oleracea HOM05D000833 ORTHO05D000969 4.5e-07 58.2 42 66.7
BolC5t32680H Brassica oleracea HOM05D000833 ORTHO05D000969 4.5e-07 58.2 42 66.7
BraA09t38981Z Brassica rapa HOM05D000833 ORTHO05D000969 4.5e-07 58.2 42 66.7
Carub.0001s3025 Capsella rubella HOM05D000833 ORTHO05D000969 4.5e-07 58.2 42 66.7
CARHR031270 Cardamine hirsuta HOM05D000833 ORTHO05D000969 4.5e-07 58.2 42 66.7
Cfa012534 Carpinus fangiana HOM05D000833 ORTHO05D000969 4.5e-07 58.2 43 65.1
AUR62007370 Chenopodium quinoa HOM05D000833 ORTHO05D000969 5.9e-07 57.8 57 52.6
Hund11166 Selenicereus undatus HOM05D000833 ORTHO05D000969 5.9e-07 57.8 50 58.0
ATR0598G051 Amborella trichopoda HOM05D000833 ORTHO05D000969 7.7e-07 57.4 43 62.8
Potri.012G042500 Populus trichocarpa HOM05D000833 ORTHO05D000969 7.7e-07 57.4 56 53.6
Sed0017054 Sechium edule HOM05D000833 ORTHO05D000969 7.7e-07 57.4 43 65.1
Sed0025769 Sechium edule HOM05D000833 ORTHO05D000969 7.7e-07 57.4 43 65.1
Solyc08g076160.3 Solanum lycopersicum HOM05D000833 ORTHO05D000969 7.7e-07 57.4 45 64.4
Sopen08g024800 Solanum pennellii HOM05D000833 ORTHO05D000969 7.7e-07 57.4 45 64.4
Thhalv10006775m.g Eutrema salsugineum HOM05D000833 ORTHO05D000969 1.0e-06 57.0 39 69.2
Hund14384 Selenicereus undatus HOM05D000833 ORTHO05D000969 1.0e-06 57.0 50 56.0
ClCG10G001220 Citrullus lanatus HOM05D000833 ORTHO05D000969 1.3e-06 56.6 43 65.1
MELO3C013815.2 Cucumis melo HOM05D000833 ORTHO05D000969 1.3e-06 56.6 43 65.1
CsaV3_3G001260 Cucumis sativus L. HOM05D000833 ORTHO05D000969 1.3e-06 56.6 43 65.1
Ah.12g055600 Amaranthus hybridus HOM05D000833 ORTHO05D000969 1.7e-06 56.2 65 49.2
QL10p031748 Quercus lobata HOM05D000833 ORTHO05D000969 1.7e-06 56.2 43 60.5
EL10Ac5g11990 Beta vulgaris HOM05D000833 ORTHO05D000969 2.3e-06 55.8 65 50.8
PSO063G2430 Papaver somniferum HOM05D000833 ORTHO05D000969 2.3e-06 55.8 43 60.5
PSO782G2256 Papaver somniferum HOM05D000833 ORTHO05D000969 2.3e-06 55.8 43 60.5
Rhsim11G0029100 Rhododendron simsii HOM05D000833 ORTHO05D000969 2.9e-06 55.5 45 62.2
unitig_46.g18383 Utricularia gibba HOM05D000833 ORTHO05D000969 2.9e-06 55.5 49 59.2
vmacro00242 Vaccinium macrocarpon HOM05D000833 ORTHO05D000969 2.9e-06 55.5 45 62.2
CiPaw.11G100000 Carya illinoinensis HOM05D000833 ORTHO05D000969 3.8e-06 55.1 43 60.5
PGR083G0675 Punica granatum HOM05D000833 ORTHO05D000969 3.8e-06 55.1 43 60.5
Sp1g27650 Schrenkiella parvula HOM05D000833 ORTHO05D000969 3.8e-06 55.1 42 64.3
Cfa020639 Carpinus fangiana HOM05D000833 ORTHO05D000969 5.0e-06 54.7 43 58.1
Ca_25160_v3 Cicer arietinum L. HOM05D000833 ORTHO05D000969 5.0e-06 54.7 63 52.4
FAN04G1357 Fragaria x ananassa HOM05D000833 ORTHO05D000969 5.0e-06 54.7 50 52.0
FAN13G1838 Fragaria x ananassa HOM05D000833 ORTHO05D000969 5.0e-06 54.7 50 52.0
FAN18G0232 Fragaria x ananassa HOM05D000833 ORTHO05D000969 5.0e-06 54.7 50 52.0
AT1G31930 Arabidopsis thaliana HOM05D000833 ORTHO05D000969 6.6e-06 54.3 42 64.3
COL.COLO4_20594 Corchorus olitorius HOM05D000833 ORTHO05D000969 6.6e-06 54.3 53 49.1
Eucgr.E01310 Eucalyptus grandis HOM05D000833 ORTHO05D000969 6.6e-06 54.3 45 60.0
Eucgr.H00557 Eucalyptus grandis HOM05D000833 ORTHO05D000969 6.6e-06 54.3 55 49.1
MD14G1239900 Malus domestica HOM05D000833 ORTHO05D000969 6.6e-06 54.3 57 45.6
SHI07218 Sapria himalayana HOM05D000833 ORTHO05D000969 6.6e-06 54.3 70 44.3


User provided reference genes

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