Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003152g0020 Nicotiana tabacum HOM05D004678 ORTHO05D005880 9.2e-153 543.5 270 100.0
Peaxi162Scf00760g00021 Petunia axillaris HOM05D004678 ORTHO05D005880 8.7e-119 430.6 420 58.8
Nitab4.5_0002113g0110 Nicotiana tabacum HOM05D004678 ORTHO05D005880 4.0e-116 421.8 424 57.5
PGSC0003DMG400032541 Solanum tuberosum HOM05D004678 ORTHO05D005880 1.4e-113 413.3 415 57.8
Nitab4.5_0007261g0010 Nicotiana tabacum HOM05D004678 ORTHO05D005880 1.2e-112 410.2 452 54.6
Solyc04g009350.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 4.3e-110 401.7 415 57.6
Sopen04g004470 Solanum pennellii HOM05D004678 ORTHO05D005880 7.3e-110 401.0 415 57.6
CAN.G624.22 Capsicum annuum HOM05D004678 ORTHO05D005880 1.2e-99 367.1 400 55.2
CSS0026818 Camellia sinensis var. sinensis HOM05D004678 ORTHO05D005880 3.8e-98 362.1 417 50.4
AUR62023572 Chenopodium quinoa HOM05D004678 ORTHO05D005880 4.2e-97 358.6 425 50.4
Hund16801 Selenicereus undatus HOM05D004678 ORTHO05D005880 4.6e-96 355.1 415 51.3
Oeu044536.1 Olea europaea HOM05D004678 ORTHO05D005880 1.0e-95 354.0 417 51.3
MSTRG.13391 Avicennia marina HOM05D004678 ORTHO05D005880 3.0e-95 352.4 423 50.6
MD12G1021300 Malus domestica HOM05D004678 ORTHO05D005880 8.7e-95 350.9 412 50.2
Migut.L01374 Erythranthe guttata HOM05D004678 ORTHO05D005880 7.4e-94 347.8 428 50.2
Actinidia04312 Actinidia chinensis HOM05D004678 ORTHO05D005880 2.8e-93 345.9 415 49.6
QL04p000013 Quercus lobata HOM05D004678 ORTHO05D005880 2.8e-93 345.9 426 48.1
Sc23g0001180 Simmondsia chinensis HOM05D004678 ORTHO05D005880 3.7e-93 345.5 423 49.4
QL02p033997 Quercus lobata HOM05D004678 ORTHO05D005880 4.8e-93 345.1 426 47.7
Aqoxy6G00120 Aquilegia oxysepala HOM05D004678 ORTHO05D005880 2.4e-92 342.8 422 48.3
Hund27082 Selenicereus undatus HOM05D004678 ORTHO05D005880 3.1e-92 342.4 420 49.8
Hma1.2p1_1487F.1_g286570 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 5.3e-92 341.7 379 52.5
CiPaw.15G082000 Carya illinoinensis HOM05D004678 ORTHO05D005880 1.2e-91 340.5 422 48.3
Cfa018194 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.5e-91 340.1 422 48.1
EL10Ac1g00076 Beta vulgaris HOM05D004678 ORTHO05D005880 3.4e-91 339.0 435 47.6
QL04p003199 Quercus lobata HOM05D004678 ORTHO05D005880 4.5e-91 338.6 441 46.3
LjContig00222g0007085 Lotus japonicus HOM05D004678 ORTHO05D005880 5.8e-91 338.2 409 48.7
DCAR_026915 Daucus carota HOM05D004678 ORTHO05D005880 1.3e-90 337.0 420 48.1
SalBow2G0558 Salvia bowleyana HOM05D004678 ORTHO05D005880 1.3e-90 337.0 427 48.7
SalBow2G2825 Salvia bowleyana HOM05D004678 ORTHO05D005880 1.3e-90 337.0 427 48.7
MELO3C023659.2 Cucumis melo HOM05D004678 ORTHO05D005880 1.7e-90 336.7 419 47.0
Hma1.2p1_0285F.1_g113940 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 1.7e-90 336.7 430 48.6
arahy.Tifrunner.gnm1.ann1.7PLX29 Arachis hypogaea HOM05D004678 ORTHO05D005880 2.9e-90 335.9 411 48.7
HanXRQChr14g0428861 Helianthus annuus HOM05D004678 ORTHO05D005880 2.9e-90 335.9 391 50.1
CiPaw.16G062100 Carya illinoinensis HOM05D004678 ORTHO05D005880 3.8e-90 335.5 423 48.5
ClCG09G010470 Citrullus lanatus HOM05D004678 ORTHO05D005880 5.0e-90 335.1 419 47.3
Eucgr.L00028 Eucalyptus grandis HOM05D004678 ORTHO05D005880 5.0e-90 335.1 409 49.6
AUR62004653 Chenopodium quinoa HOM05D004678 ORTHO05D005880 6.5e-90 334.7 403 50.4
Eucgr.G01597 Eucalyptus grandis HOM05D004678 ORTHO05D005880 6.5e-90 334.7 409 49.6
Lalb_Chr01g0010011 Lupinus albus HOM05D004678 ORTHO05D005880 6.5e-90 334.7 421 48.2
ClCG07G016110 Citrullus lanatus HOM05D004678 ORTHO05D005880 8.4e-90 334.3 419 47.5
CANSAT21G1357 Cannabis sativa HOM05D004678 ORTHO05D005880 1.4e-89 333.6 423 47.8
FAN10G3317 Fragaria x ananassa HOM05D004678 ORTHO05D005880 1.4e-89 333.6 415 47.5
Glyma.16G155800 Glycine max HOM05D004678 ORTHO05D005880 3.2e-89 332.4 421 47.3
FvH4_7g02740 Fragaria vesca HOM05D004678 ORTHO05D005880 4.2e-89 332.0 415 47.2
Phvul.004G083900 Phaseolus vulgaris HOM05D004678 ORTHO05D005880 4.2e-89 332.0 421 47.5
Prupe.6G194700 Prunus persica HOM05D004678 ORTHO05D005880 7.1e-89 331.3 414 47.3
ECA236G1055 Erigeron canadensis HOM05D004678 ORTHO05D005880 9.3e-89 330.9 402 48.5
FAN06G1846 Fragaria x ananassa HOM05D004678 ORTHO05D005880 9.3e-89 330.9 415 47.2
Ciclev10001274m.g Citrus clementina HOM05D004678 ORTHO05D005880 1.2e-88 330.5 424 47.4
Duzib177G0967 Durio zibethinus HOM05D004678 ORTHO05D005880 1.6e-88 330.1 425 46.8
HanXRQChr06g0184941 Helianthus annuus HOM05D004678 ORTHO05D005880 2.1e-88 329.7 381 50.9
FAN03G3192 Fragaria x ananassa HOM05D004678 ORTHO05D005880 2.7e-88 329.3 415 47.0
TAR381G1101 Trochodendron aralioides HOM05D004678 ORTHO05D005880 4.6e-88 328.6 419 47.3
GSVIVG01034496001 Vitis vinifera HOM05D004678 ORTHO05D005880 6.1e-88 328.2 371 50.1
Manes.02G191200 Manihot esculenta HOM05D004678 ORTHO05D005880 7.9e-88 327.8 422 47.6
TWI34G1123 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 1.3e-87 327.0 381 49.6
SGA_v2.0_scaffold8G04287 Striga asiatica HOM05D004678 ORTHO05D005880 2.3e-87 326.2 410 47.8
CsaV3_7G024070 Cucumis sativus L. HOM05D004678 ORTHO05D005880 3.0e-87 325.9 419 46.5
Lsat_1_v5_gn_9_80761 Lactuca sativa HOM05D004678 ORTHO05D005880 3.0e-87 325.9 419 48.0
Cc02_g14680 Coffea canephora HOM05D004678 ORTHO05D005880 3.9e-87 325.5 432 47.7
Ca_07561_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 5.1e-87 325.1 410 47.8
VMungo0464G0500 Vigna mungo HOM05D004678 ORTHO05D005880 8.7e-87 324.3 420 46.4
PGR142G3802 Punica granatum HOM05D004678 ORTHO05D005880 3.3e-86 322.4 387 49.1
RcHm_v2.0_Chr1g0322001 Rosa chinensis HOM05D004678 ORTHO05D005880 4.3e-86 322.0 414 47.3
TWI32G0349 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 4.3e-86 322.0 377 48.5
CDE04G3296 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 5.7e-86 321.6 392 49.2
Lj3A851T66 Lonicera japonica HOM05D004678 ORTHO05D005880 7.4e-86 321.2 445 45.8
unitig_699.g19496 Utricularia gibba HOM05D004678 ORTHO05D005880 7.4e-86 321.2 422 47.4
Ah.05g178040 Amaranthus hybridus HOM05D004678 ORTHO05D005880 1.3e-85 320.5 452 45.6
Gohir.A09G117500 Gossypium hirsutum HOM05D004678 ORTHO05D005880 3.7e-85 318.9 420 46.0
MD14G1018500 Malus domestica HOM05D004678 ORTHO05D005880 3.7e-85 318.9 343 54.8
Thecc.08G181800 Theobroma cacao HOM05D004678 ORTHO05D005880 4.8e-85 318.5 426 46.7
Medtr6g033540 Medicago truncatula HOM05D004678 ORTHO05D005880 8.2e-85 317.8 412 46.4
COL.COLO4_19882 Corchorus olitorius HOM05D004678 ORTHO05D005880 1.4e-84 317.0 385 47.8
Gohir.D09G114300 Gossypium hirsutum HOM05D004678 ORTHO05D005880 1.8e-84 316.6 418 46.4
TPR.G36715 Trifolium pratense HOM05D004678 ORTHO05D005880 3.1e-84 315.8 413 47.0
AT5G10330 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 4.1e-84 315.5 384 48.2
ATR0152G001 Amborella trichopoda HOM05D004678 ORTHO05D005880 5.3e-84 315.1 374 48.9
BcaB05g24692 Brassica carinata HOM05D004678 ORTHO05D005880 5.3e-84 315.1 342 52.6
Potri.013G113900 Populus trichocarpa HOM05D004678 ORTHO05D005880 6.9e-84 314.7 422 45.5
THA.LOC104800109 Tarenaya hassleriana HOM05D004678 ORTHO05D005880 1.5e-83 313.5 384 47.7
AL2G31530 Arabidopsis lyrata HOM05D004678 ORTHO05D005880 2.0e-83 313.2 387 48.3
Carub.0002s1870 Capsella rubella HOM05D004678 ORTHO05D005880 3.4e-83 312.4 384 47.9
PSO017G6114 Papaver somniferum HOM05D004678 ORTHO05D005880 3.4e-83 312.4 403 45.4
Cpa.g.sc36.40 Carica papaya HOM05D004678 ORTHO05D005880 5.9e-83 311.6 424 46.0
AT1G71920 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 7.7e-83 311.2 382 48.4
Rhsim09G0073000 Rhododendron simsii HOM05D004678 ORTHO05D005880 7.7e-83 311.2 488 41.6
PSO063G1958 Papaver somniferum HOM05D004678 ORTHO05D005880 1.0e-82 310.8 406 45.6
Sabra13G0096400 Salix brachista HOM05D004678 ORTHO05D005880 1.0e-82 310.8 400 45.5
Zm00001eb252330 Zea mays HOM05D004678 ORTHO05D005880 1.0e-82 310.8 377 48.5
Sp5g26990 Schrenkiella parvula HOM05D004678 ORTHO05D005880 2.2e-82 309.7 384 47.4
Atru.chr13.1797 Acer truncatum HOM05D004678 ORTHO05D005880 2.9e-82 309.3 376 48.9
Aa31LG4G8700 Aethionema arabicum HOM05D004678 ORTHO05D005880 2.9e-82 309.3 394 47.2
Thhalv10007345m.g Eutrema salsugineum HOM05D004678 ORTHO05D005880 1.4e-81 307.0 390 47.4
BcaB05g24693 Brassica carinata HOM05D004678 ORTHO05D005880 1.9e-81 306.6 368 48.9
Os02g0709200 Oryza sativa ssp. japonica HOM05D004678 ORTHO05D005880 2.5e-81 306.2 365 48.8
BcaC03g15310 Brassica carinata HOM05D004678 ORTHO05D005880 4.2e-81 305.4 362 48.9
A02p17560 Brassica napus HOM05D004678 ORTHO05D005880 7.2e-81 304.7 360 49.4
BraA02t06800Z Brassica rapa HOM05D004678 ORTHO05D005880 7.2e-81 304.7 360 49.4
C06p45990 Brassica napus HOM05D004678 ORTHO05D005880 9.4e-81 304.3 411 45.5
BolC6t39653H Brassica oleracea HOM05D004678 ORTHO05D005880 9.4e-81 304.3 411 45.5
CARHR064740 Cardamine hirsuta HOM05D004678 ORTHO05D005880 1.2e-80 303.9 384 46.6
BcaB03g14912 Brassica carinata HOM05D004678 ORTHO05D005880 1.6e-80 303.5 371 47.4
BraA07t31374Z Brassica rapa HOM05D004678 ORTHO05D005880 1.6e-80 303.5 425 44.2
BcaC08g46628 Brassica carinata HOM05D004678 ORTHO05D005880 2.7e-80 302.8 409 45.0
A07p38090 Brassica napus HOM05D004678 ORTHO05D005880 1.4e-79 300.4 418 44.3
C02p29210 Brassica napus HOM05D004678 ORTHO05D005880 1.4e-79 300.4 375 47.2
BolC2t08971H Brassica oleracea HOM05D004678 ORTHO05D005880 1.4e-79 300.4 375 47.2
BcaC08g46629 Brassica carinata HOM05D004678 ORTHO05D005880 1.5e-78 297.0 362 47.8
arahy.Tifrunner.gnm1.ann1.57RIKC Arachis hypogaea HOM05D004678 ORTHO05D005880 5.9e-75 285.0 428 43.5
Nn6g34909 Nelumbo nucifera HOM05D004678 ORTHO05D005880 2.2e-74 283.1 347 50.4
Dinv30099 Davidia involucrata HOM05D004678 ORTHO05D005880 8.2e-69 264.6 338 48.2
Mapoly0007s0122 Marchantia polymorpha HOM05D004678 ORTHO05D005880 7.0e-68 261.5 375 42.9
Sopen11g017200 Solanum pennellii HOM05D004678 ORTHO05D005880 2.6e-67 259.6 135 92.6
SMO343G0150 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 4.5e-67 258.8 360 42.8
Gorai.006G132200 Gossypium raimondii HOM05D004678 ORTHO05D005880 2.2e-66 256.5 378 44.4
Pp3c19_9420 Physcomitrium patens HOM05D004678 ORTHO05D005880 2.3e-63 246.5 357 41.5
HPP92_016059 Vanilla planifolia HOM05D004678 ORTHO05D005880 4.1e-60 235.7 344 43.3
Cre16.g672385 Chlamydomonas reinhardtii HOM05D004678 ORTHO05D005880 4.5e-59 232.3 356 39.6
Prupe.8G056800 Prunus persica HOM05D004678 ORTHO05D005880 2.2e-58 229.9 244 54.9
TAR629G2521 Trochodendron aralioides HOM05D004678 ORTHO05D005880 1.1e-57 227.6 265 49.1
MCO01G265 Micromonas commoda HOM05D004678 ORTHO05D005880 5.7e-54 215.3 385 35.6
Medtr6g033600 Medicago truncatula HOM05D004678 ORTHO05D005880 6.3e-53 211.8 130 80.0
GSVIVG01025260001 Vitis vinifera HOM05D004678 ORTHO05D005880 1.7e-50 203.8 121 80.2
PRCOL_00004069 Prasinoderma coloniale HOM05D004678 ORTHO05D005880 1.5e-49 200.7 346 37.0
Haze_17921 Corylus avellana HOM05D004678 ORTHO05D005880 1.8e-47 193.7 433 35.1
DCAR_023441 Daucus carota HOM05D004678 ORTHO05D005880 4.0e-47 192.6 130 73.8
Sed0015109 Sechium edule HOM05D004678 ORTHO05D005880 6.8e-47 191.8 311 40.8
AagrBONN_evm.TU.Sc2ySwM_362.1592 Anthoceros agrestis HOM05D004678 ORTHO05D005880 8.8e-47 191.4 130 69.2
CDE07G1916 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 8.6e-42 174.9 103 81.6
HPP92_016095 Vanilla planifolia HOM05D004678 ORTHO05D005880 4.0e-39 166.0 297 40.1
MBI17_g38771_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 5.4e-36 155.6 126 67.5
MBI17_g42088_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 5.4e-36 155.6 126 67.5
Ca_29915_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 1.6e-32 144.1 130 60.0
PGSC0003DMG400008416 Solanum tuberosum HOM05D004678 ORTHO05D005880 1.6e-32 144.1 106 74.5
Psat1g098720 Pisum sativum HOM05D004678 ORTHO05D005880 8.9e-31 138.3 321 34.3
SMO367G0035 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 3.3e-25 119.8 101 61.4
CBR_g40358 Chara braunii HOM05D000019 ORTHO05D000048 5.6e-25 119.0 99 62.6
Solyc11g040030.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 9.2e-20 101.7 108 63.0
Cfa005301 Carpinus fangiana HOM05D004678 ORTHO05D005880 5.1e-18 95.9 52 82.7
Cfa009297 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.6e-16 90.9 52 78.8
Psat0s2699g0120 Pisum sativum HOM05D004678 ORTHO05D005880 3.6e-16 89.7 53 77.4
SHI09056 Sapria himalayana HOM05D004678 ORTHO05D005880 2.3e-15 87.0 53 75.5
CDE07G1051 Ceratophyllum demersum HOM05D004678 ORTHO05D043902 6.8e-15 85.5 86 58.1
GSVIVG01025261001 Vitis vinifera HOM05D004678 ORTHO05D005880 6.8e-15 85.5 52 73.1
CAN.G137.23 Capsicum annuum HOM05D004678 ORTHO05D000493 2.9e-13 80.1 46 80.4
SMO035G0001 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 6.6e-10 68.9 111 45.0
COL.COLO4_19765 Corchorus olitorius HOM05D004678 ORTHO05D005880 1.5e-09 67.8 35 77.1
Psat0s2699g0200 Pisum sativum HOM05D004678 ORTHO05D043902 3.1e-07 60.1 53 66.0
SHI09057 Sapria himalayana HOM05D004678 ORTHO05D005880 6.8e-07 58.9 52 57.7


User provided reference genes

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