Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003133g0060 Nicotiana tabacum HOM05D007438 ORTHO05D009395 6.2e-129 464.2 235 100.0
CAN.G803.12 Capsicum annuum HOM05D007438 ORTHO05D009395 9.3e-93 344.0 257 73.5
PGSC0003DMG401017288 Solanum tuberosum HOM05D007438 ORTHO05D009395 4.6e-84 315.1 257 70.0
Peaxi162Scf00154g01024 Petunia axillaris HOM05D007438 ORTHO05D009395 1.8e-80 303.1 244 68.9
Sopen07g029090 Solanum pennellii HOM05D007438 ORTHO05D009395 9.0e-80 300.8 259 68.0
Solyc07g055720.4 Solanum lycopersicum HOM05D007438 ORTHO05D009395 6.5e-78 294.7 259 67.6
Nitab4.5_0005259g0040 Nicotiana tabacum HOM05D007438 ORTHO05D009395 3.2e-77 292.4 217 75.6
Nitab4.5_0011473g0010 Nicotiana tabacum HOM05D007438 ORTHO05D009395 2.7e-76 289.3 194 79.4
GSVIVG01020783001 Vitis vinifera HOM05D007438 ORTHO05D009395 1.7e-57 226.9 262 50.8
MSTRG.6772 Avicennia marina HOM05D007438 ORTHO05D009395 4.8e-57 225.3 264 48.5
TAR629G3405 Trochodendron aralioides HOM05D007438 ORTHO05D009395 4.8e-57 225.3 264 48.9
Thecc.01G156400 Theobroma cacao HOM05D007438 ORTHO05D009395 1.7e-54 216.9 257 49.0
Cc05_g09010 Coffea canephora HOM05D007438 ORTHO05D009395 2.9e-54 216.1 264 44.3
Duzib264G0748 Durio zibethinus HOM05D007438 ORTHO05D009395 2.7e-52 209.5 263 47.9
CSS0040852 Camellia sinensis var. sinensis HOM05D007438 ORTHO05D009395 6.7e-51 204.9 273 49.1
Actinidia30518 Actinidia chinensis HOM05D007438 ORTHO05D009395 8.8e-51 204.5 276 47.5
vmacro09194 Vaccinium macrocarpon HOM05D007438 ORTHO05D009395 2.0e-50 203.4 267 46.4
Potri.014G141500 Populus trichocarpa HOM05D007438 ORTHO05D009395 2.6e-50 203.0 270 47.0
CSS0044063 Camellia sinensis var. sinensis HOM05D007438 ORTHO05D009395 3.3e-50 202.6 271 48.0
Rhsim04G0081300 Rhododendron simsii HOM05D007438 ORTHO05D009395 4.1e-48 195.7 274 46.0
Sed0004780 Sechium edule HOM05D007438 ORTHO05D009395 9.1e-48 194.5 256 45.7
QL08p043052 Quercus lobata HOM05D007438 ORTHO05D009395 2.6e-47 193.0 299 43.5
SalBow7G1752 Salvia bowleyana HOM05D007438 ORTHO05D009395 4.5e-47 192.2 260 43.1
AUR62031789 Chenopodium quinoa HOM05D007438 ORTHO05D009395 5.9e-47 191.8 274 42.3
ClCG09G022220 Citrullus lanatus HOM05D007438 ORTHO05D009395 5.9e-47 191.8 256 44.5
Atru.chr6.3569 Acer truncatum HOM05D007438 ORTHO05D009395 7.7e-47 191.4 271 42.8
Ciclev10016256m.g Citrus clementina HOM05D007438 ORTHO05D009395 1.0e-46 191.0 273 43.2
COL.COLO4_33655 Corchorus olitorius HOM05D007438 ORTHO05D009395 3.8e-46 189.1 252 43.7
EL10Ac9g21031 Beta vulgaris HOM05D007438 ORTHO05D009395 5.0e-46 188.7 276 42.0
MBI06_g16570_MAGBIO Magnolia biondii HOM05D007438 ORTHO05D009395 6.5e-46 188.3 271 41.7
Medtr5g091960 Medicago truncatula HOM05D007438 ORTHO05D009395 8.5e-46 188.0 262 43.5
Migut.M00210 Erythranthe guttata HOM05D007438 ORTHO05D009395 5.5e-45 185.3 247 46.6
Ca_06297_v3 Cicer arietinum L. HOM05D007438 ORTHO05D009395 7.2e-45 184.9 263 43.0
MELO3C014451.2 Cucumis melo HOM05D007438 ORTHO05D009395 7.2e-45 184.9 250 44.0
Eucgr.A01949 Eucalyptus grandis HOM05D007438 ORTHO05D009395 1.2e-44 184.1 261 46.4
Cfa021395 Carpinus fangiana HOM05D007438 ORTHO05D009395 2.1e-44 183.3 312 39.1
CiPaw.03G193300 Carya illinoinensis HOM05D007438 ORTHO05D009395 2.1e-44 183.3 298 40.3
Glyma.02G288700 Glycine max HOM05D007438 ORTHO05D009395 2.7e-44 183.0 266 42.9
Manes.01G129800 Manihot esculenta HOM05D007438 ORTHO05D009395 2.7e-44 183.0 244 45.9
LjContig00310g0012276 Lotus japonicus HOM05D007438 ORTHO05D009395 1.0e-43 181.0 257 42.0
CsaV3_6G037900 Cucumis sativus L. HOM05D007438 ORTHO05D009395 6.7e-43 178.3 250 42.8
Gorai.006G004700 Gossypium raimondii HOM05D007438 ORTHO05D009395 8.8e-43 177.9 264 43.2
PGR042G1218 Punica granatum HOM05D007438 ORTHO05D009395 8.8e-43 177.9 268 41.8
Gohir.D09G003400 Gossypium hirsutum HOM05D007438 ORTHO05D009395 2.0e-42 176.8 264 42.0
Gohir.A09G003800 Gossypium hirsutum HOM05D007438 ORTHO05D009395 3.3e-42 176.0 264 43.2
Nn3g21054 Nelumbo nucifera HOM05D007438 ORTHO05D009395 3.3e-42 176.0 256 43.0
Cpa.g.sc50.57 Carica papaya HOM05D007438 ORTHO05D009395 4.4e-42 175.6 286 39.9
Hund07732 Selenicereus undatus HOM05D007438 ORTHO05D009395 4.4e-42 175.6 281 39.1
DCAR_013288 Daucus carota HOM05D007438 ORTHO05D009395 9.7e-42 174.5 251 41.0
TPR.G12671 Trifolium pratense HOM05D007438 ORTHO05D009395 9.7e-42 174.5 263 41.8
Aqoxy1G01934 Aquilegia oxysepala HOM05D007438 ORTHO05D009395 6.3e-41 171.8 280 39.6
Glyma.14G026100 Glycine max HOM05D007438 ORTHO05D009395 8.2e-41 171.4 264 41.3
Sabra14G0106800 Salix brachista HOM05D007438 ORTHO05D009395 1.1e-40 171.0 259 44.0
arahy.Tifrunner.gnm1.ann1.2XI8FI Arachis hypogaea HOM05D007438 ORTHO05D009395 3.1e-40 169.5 275 40.0
arahy.Tifrunner.gnm1.ann1.9R49YU Arachis hypogaea HOM05D007438 ORTHO05D009395 3.1e-40 169.5 275 40.0
Dinv11426 Davidia involucrata HOM05D007438 ORTHO05D009395 4.1e-40 169.1 264 41.7
AUR62023994 Chenopodium quinoa HOM05D007438 ORTHO05D009395 3.5e-39 166.0 262 39.7
Lalb_Chr10g0106871 Lupinus albus HOM05D007438 ORTHO05D009395 3.5e-39 166.0 260 41.9
Prupe.3G108500 Prunus persica HOM05D007438 ORTHO05D009395 7.7e-39 164.9 205 49.3
Lj3C1012T3 Lonicera japonica HOM05D007438 ORTHO05D009395 2.2e-38 163.3 270 41.1
Lsat_1_v5_gn_4_26780 Lactuca sativa HOM05D007438 ORTHO05D009395 8.5e-38 161.4 258 40.7
CANSAT64G1631 Cannabis sativa HOM05D007438 ORTHO05D009395 5.5e-37 158.7 292 36.6
CSS0035465 Camellia sinensis var. sinensis HOM05D007438 ORTHO05D009395 9.4e-37 157.9 283 41.0
SEGI_11984 Sequoiadendron giganteum HOM05D007438 ORTHO05D009395 1.2e-36 157.5 271 36.5
VMungo1215G1664 Vigna mungo HOM05D007438 ORTHO05D009395 1.6e-36 157.1 252 40.5
Psat2g015640 Pisum sativum HOM05D007438 ORTHO05D009395 8.8e-35 151.4 264 40.9
ECA234G1517 Erigeron canadensis HOM05D007438 ORTHO05D009395 1.7e-33 147.1 266 38.7
HanXRQChr01g0028661 Helianthus annuus HOM05D007438 ORTHO05D009395 2.2e-33 146.7 269 38.3
TWI74G0447 Tripterygium wilfordii HOM05D007438 ORTHO05D009395 1.4e-32 144.1 247 39.7
Phvul.008G264700 Phaseolus vulgaris HOM05D007438 ORTHO05D009395 1.8e-32 143.7 264 37.5
A10p05120 Brassica napus HOM05D007438 ORTHO05D009395 5.4e-32 142.1 293 32.8
BraA10t42777Z Brassica rapa HOM05D007438 ORTHO05D009395 1.2e-31 141.0 302 32.1
AL1G16470 Arabidopsis lyrata HOM05D007438 ORTHO05D009395 2.0e-31 140.2 295 34.9
arahy.Tifrunner.gnm1.ann1.K6S8U8 Arachis hypogaea HOM05D007438 ORTHO05D009395 2.0e-31 140.2 275 36.4
CARHR006070 Cardamine hirsuta HOM05D007438 ORTHO05D009395 4.5e-31 139.0 289 35.3
Sp1g05220 Schrenkiella parvula HOM05D007438 ORTHO05D009395 7.7e-31 138.3 300 34.0
AT1G06460 Arabidopsis thaliana HOM05D007438 ORTHO05D009395 2.2e-30 136.7 294 33.3
THA.LOC104800831 Tarenaya hassleriana HOM05D007438 ORTHO05D009395 6.5e-30 135.2 259 35.9
BolC5t29243H Brassica oleracea HOM05D007438 ORTHO05D009395 1.1e-29 134.4 316 32.3
C05p04710 Brassica napus HOM05D007438 ORTHO05D009395 1.9e-29 133.7 305 31.8
Carub.0001s0582 Capsella rubella HOM05D007438 ORTHO05D009395 1.9e-29 133.7 299 33.8
HPP92_021771 Vanilla planifolia HOM05D007438 ORTHO05D009395 1.6e-28 130.6 254 36.6
Sc21g0004330 Simmondsia chinensis HOM05D007438 ORTHO05D009395 4.7e-28 129.0 95 63.2
TAR626G1821 Trochodendron aralioides HOM05D007438 ORTHO05D009395 3.0e-27 126.3 214 43.5
BcaB02g06796 Brassica carinata HOM05D007438 ORTHO05D009395 1.5e-26 124.0 293 31.1
Thhalv10008353m.g Eutrema salsugineum HOM05D007438 ORTHO05D009395 4.4e-26 122.5 90 60.0
BraA08t35504Z Brassica rapa HOM05D007438 ORTHO05D009395 1.3e-25 120.9 291 32.0
ATR0127G021 Amborella trichopoda HOM05D007438 ORTHO05D009395 2.2e-25 120.2 219 37.9
A08p35960 Brassica napus HOM05D007438 ORTHO05D009395 3.7e-25 119.4 225 36.4
BolC8t47053H Brassica oleracea HOM05D007438 ORTHO05D009395 3.1e-24 116.3 283 32.9
C08p02600 Brassica napus HOM05D007438 ORTHO05D009395 3.5e-23 112.8 269 33.5
Aa31LG1G7510 Aethionema arabicum HOM05D007438 ORTHO05D009395 5.0e-22 109.0 307 32.2
arahy.Tifrunner.gnm1.ann1.AN6F3M Arachis hypogaea HOM05D007438 ORTHO05D009395 8.6e-22 108.2 131 45.0
arahy.Tifrunner.gnm1.ann1.28WURV Arachis hypogaea HOM05D007438 ORTHO05D009395 4.3e-21 105.9 89 55.1
SMO111G0151 Selaginella moellendorffii HOM05D007438 ORTHO05D009395 8.9e-19 98.2 250 32.0
Mapoly0109s0048 Marchantia polymorpha HOM05D007438 ORTHO05D009395 9.8e-18 94.7 95 43.2
BcaB03g13417 Brassica carinata HOM05D000181 ORTHO05D002783 5.4e-16 89.0 271 28.4
SalBow8G2019 Salvia bowleyana HOM05D007438 ORTHO05D009395 1.6e-15 87.4 130 43.1
Sc21g0004320 Simmondsia chinensis HOM05D007438 ORTHO05D009395 1.6e-15 87.4 155 41.9
HanXRQChr17g0565881 Helianthus annuus HOM05D007438 ORTHO05D009395 3.7e-09 66.2 82 46.3
Lj2g0002550 Lotus japonicus HOM05D007438 ORTHO05D009395 4.9e-09 65.9 55 56.4
Phvul.003G195300 Phaseolus vulgaris HOM05D007438 ORTHO05D009395 4.9e-09 65.9 146 37.0
BcaC07g36810 Brassica carinata HOM05D000181 ORTHO05D002783 1.4e-08 64.3 199 34.2
Haze_13451 Corylus avellana HOM05D007438 ORTHO05D009395 3.2e-08 63.2 123 39.8
CDE10G0904 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 1.6e-07 60.8 88 34.1
TAR628G0350 Trochodendron aralioides HOM05D000136 ORTHO05D000080 2.7e-07 60.1 89 34.8
Aqoxy5G00809 Aquilegia oxysepala HOM05D000136 ORTHO05D000080 4.6e-07 59.3 95 30.5
MBI05_g23630_MAGBIO Magnolia biondii HOM05D000136 ORTHO05D000080 4.6e-07 59.3 90 35.6
TAR628G0129 Trochodendron aralioides HOM05D000136 ORTHO05D000080 4.6e-07 59.3 89 34.8
Haze_09969 Corylus avellana HOM05D000136 ORTHO05D000080 7.8e-07 58.5 94 31.9
Thecc.09G059600 Theobroma cacao HOM05D000136 ORTHO05D000080 1.0e-06 58.2 90 36.7
CiPaw.15G087800 Carya illinoinensis HOM05D000136 ORTHO05D000080 1.3e-06 57.8 90 35.6
Medtr1g015165 Medicago truncatula HOM05D000136 ORTHO05D000080 1.3e-06 57.8 90 35.6
Oeu045056.1 Olea europaea HOM05D000136 ORTHO05D000080 1.3e-06 57.8 95 31.6
RhsimUnG0004900 Rhododendron simsii HOM05D000136 ORTHO05D000080 1.3e-06 57.8 95 32.6
Sed0014752 Sechium edule HOM05D000136 ORTHO05D000080 1.3e-06 57.8 88 35.2
VMungo1309G2565 Vigna mungo HOM05D000136 ORTHO05D000080 1.3e-06 57.8 96 33.3
CDE12G0467 Ceratophyllum demersum HOM05D000136 ORTHO05D000080 1.7e-06 57.4 89 33.7
Nitab4.5_0000286g0050 Nicotiana tabacum HOM05D000136 ORTHO05D000080 1.7e-06 57.4 90 36.7
Rhsim10G0013000 Rhododendron simsii HOM05D000136 ORTHO05D000080 1.7e-06 57.4 95 32.6
Sed0005212 Sechium edule HOM05D000136 ORTHO05D000080 1.7e-06 57.4 90 33.3
TAR636G1216 Trochodendron aralioides HOM05D000136 ORTHO05D000080 1.7e-06 57.4 89 33.7
Atru.chr7.1909 Acer truncatum HOM05D000136 ORTHO05D000080 2.3e-06 57.0 90 35.6
CANSAT01G1589 Cannabis sativa HOM05D000136 ORTHO05D000080 2.3e-06 57.0 95 28.4
CiPaw.03G011300 Carya illinoinensis HOM05D000136 ORTHO05D000080 2.3e-06 57.0 89 31.5
Nitab4.5_0000286g0040 Nicotiana tabacum HOM05D000136 ORTHO05D000080 2.3e-06 57.0 90 35.6
CiPaw.15G088500 Carya illinoinensis HOM05D000136 ORTHO05D000080 3.0e-06 56.6 90 35.6
CBR_g48901 Chara braunii HOM05D000136 ORTHO05D000080 3.0e-06 56.6 118 27.1
COL.COLO4_21111 Corchorus olitorius HOM05D000136 ORTHO05D000080 3.0e-06 56.6 90 34.4
Duzib168G1634 Durio zibethinus HOM05D000136 ORTHO05D000080 3.0e-06 56.6 89 34.8
MBI05_g23631_MAGBIO Magnolia biondii HOM05D000136 ORTHO05D000080 3.0e-06 56.6 90 32.2
MBI05_g23632_MAGBIO Magnolia biondii HOM05D000136 ORTHO05D000080 3.0e-06 56.6 90 32.2
Peaxi162Scf00565g00812 Petunia axillaris HOM05D000136 ORTHO05D000080 3.0e-06 56.6 90 36.7
Phvul.001G039800 Phaseolus vulgaris HOM05D000136 ORTHO05D000080 3.0e-06 56.6 90 34.4
CiPaw.15G088100 Carya illinoinensis HOM05D000136 ORTHO05D000080 3.9e-06 56.2 90 35.6
Eucgr.K00423 Eucalyptus grandis HOM05D001099 ORTHO05D000958 3.9e-06 56.2 84 34.5
Eucgr.L02980 Eucalyptus grandis HOM05D001099 ORTHO05D000958 3.9e-06 56.2 84 34.5
Lj7C239T7 Lonicera japonica HOM05D000136 ORTHO05D000080 3.9e-06 56.2 90 35.6
Lalb_Chr11g0069001 Lupinus albus HOM05D000136 ORTHO05D000080 3.9e-06 56.2 90 37.8
Nn8g38744 Nelumbo nucifera HOM05D000136 ORTHO05D000080 3.9e-06 56.2 90 34.4
Nitab4.5_0003244g0020 Nicotiana tabacum HOM05D000136 ORTHO05D000080 3.9e-06 56.2 90 37.8
TWI63G1578 Tripterygium wilfordii HOM05D000136 ORTHO05D000080 3.9e-06 56.2 90 35.6
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 3.9e-06 56.2 95 30.5
TAR624G0976 Trochodendron aralioides HOM05D000136 ORTHO05D000080 3.9e-06 56.2 90 34.4
CSS0026975 Camellia sinensis var. sinensis HOM05D000136 ORTHO05D000080 5.0e-06 55.8 131 30.5
CiPaw.15G088300 Carya illinoinensis HOM05D000136 ORTHO05D000080 5.0e-06 55.8 90 35.6
CBR_g48903 Chara braunii HOM05D000136 ORTHO05D000080 5.0e-06 55.8 118 28.8
CBR_g75913 Chara braunii HOM05D000136 ORTHO05D000080 5.0e-06 55.8 118 28.8
Glyma.04G054400 Glycine max HOM05D000136 ORTHO05D000080 5.0e-06 55.8 90 34.4
Glyma.14G100000 Glycine max HOM05D000136 ORTHO05D000080 5.0e-06 55.8 90 34.4
Lalb_Chr23g0267941 Lupinus albus HOM05D000136 ORTHO05D000080 5.0e-06 55.8 90 35.6
MD08G1068800 Malus domestica HOM05D000136 ORTHO05D000080 5.0e-06 55.8 90 35.6
Phvul.001G039700 Phaseolus vulgaris HOM05D000136 ORTHO05D000080 5.0e-06 55.8 90 34.4
Psat6g022160 Pisum sativum HOM05D000136 ORTHO05D000080 5.0e-06 55.8 90 35.6
Psat6g022240 Pisum sativum HOM05D000136 ORTHO05D000080 5.0e-06 55.8 90 35.6
VMungo0647G2315 Vigna mungo HOM05D000136 ORTHO05D000080 5.0e-06 55.8 90 34.4
Ah.16g103180 Amaranthus hybridus HOM05D000136 ORTHO05D000076 6.6e-06 55.5 91 31.9
CBR_g48902 Chara braunii HOM05D000136 ORTHO05D000080 6.6e-06 55.5 95 31.6
ClCG05G018130 Citrullus lanatus HOM05D000136 ORTHO05D000080 6.6e-06 55.5 90 33.3
COL.COLO4_21109 Corchorus olitorius HOM05D000136 ORTHO05D000080 6.6e-06 55.5 90 33.3
Duzib168G0689 Durio zibethinus HOM05D000136 ORTHO05D000080 6.6e-06 55.5 90 32.2
Glyma.13G071400 Glycine max HOM05D000136 ORTHO05D000080 6.6e-06 55.5 95 28.4
Lj5g0020031 Lotus japonicus HOM05D000136 ORTHO05D000080 6.6e-06 55.5 90 34.4
Lj5g0025088 Lotus japonicus HOM05D000136 ORTHO05D000080 6.6e-06 55.5 90 34.4
Psat6g021840 Pisum sativum HOM05D000136 ORTHO05D000080 6.6e-06 55.5 90 34.4
RcHm_v2.0_Chr6g0311451 Rosa chinensis HOM05D000136 ORTHO05D000080 6.6e-06 55.5 90 34.4
VMungo1309G2119 Vigna mungo HOM05D000136 ORTHO05D000080 6.6e-06 55.5 90 36.7
ATR0051G009 Amborella trichopoda HOM05D000136 ORTHO05D000080 8.6e-06 55.1 90 35.6
Aqoxy2G01038 Aquilegia oxysepala HOM05D000136 ORTHO05D000080 8.6e-06 55.1 90 33.3
MSTRG.16461 Avicennia marina HOM05D000136 ORTHO05D000080 8.6e-06 55.1 97 33.0
BcaNung02631 Brassica carinata HOM05D000136 ORTHO05D000080 8.6e-06 55.1 90 33.3
CiPaw.15G088000 Carya illinoinensis HOM05D000136 ORTHO05D000080 8.6e-06 55.1 90 34.4
CBR_g48897 Chara braunii HOM05D000136 ORTHO05D000080 8.6e-06 55.1 118 28.8
MELO3C016898.2 Cucumis melo HOM05D000136 ORTHO05D000080 8.6e-06 55.1 88 33.0
CsaV3_4G035900 Cucumis sativus L. HOM05D000136 ORTHO05D000080 8.6e-06 55.1 88 34.1
Glyma.06G054700 Glycine max HOM05D000136 ORTHO05D000080 8.6e-06 55.1 90 34.4
Gohir.D05G041500 Gossypium hirsutum HOM05D000136 ORTHO05D000080 8.6e-06 55.1 90 33.3
Gorai.009G042100 Gossypium raimondii HOM05D000136 ORTHO05D000080 8.6e-06 55.1 90 33.3
Lj7C239T6 Lonicera japonica HOM05D000136 ORTHO05D000080 8.6e-06 55.1 90 34.4
Lj7C245T5 Lonicera japonica HOM05D000136 ORTHO05D000080 8.6e-06 55.1 90 34.4
Lalb_Chr08g0244901 Lupinus albus HOM05D000136 ORTHO05D000080 8.6e-06 55.1 118 31.4
Lalb_Chr11g0069451 Lupinus albus HOM05D000136 ORTHO05D000080 8.6e-06 55.1 90 37.8
TPR.G38883 Trifolium pratense HOM05D000136 ORTHO05D000080 8.6e-06 55.1 90 34.4
HPP92_008785 Vanilla planifolia HOM05D000136 ORTHO05D000080 8.6e-06 55.1 89 36.0
Zm00001eb112330 Zea mays HOM05D000136 ORTHO05D000080 8.6e-06 55.1 91 33.0


User provided reference genes

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