Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003130g0060 Nicotiana tabacum HOM05D006364 ORTHO05D007968 1.1e-50 203.0 101 100.0
Nitab4.5_0000152g0370 Nicotiana tabacum HOM05D006364 ORTHO05D007968 9.3e-50 199.9 100 99.0
Peaxi162Scf00126g01328 Petunia axillaris HOM05D006364 ORTHO05D007968 1.1e-45 186.4 101 92.1
Solyc04g071180.3 Solanum lycopersicum HOM05D006364 ORTHO05D007968 2.6e-44 181.8 92 96.7
Sopen04g027130 Solanum pennellii HOM05D006364 ORTHO05D007968 2.6e-44 181.8 92 96.7
PGSC0003DMG400008613 Solanum tuberosum HOM05D006364 ORTHO05D007968 4.9e-43 177.6 92 93.5
CAN.G175.13 Capsicum annuum HOM05D006364 ORTHO05D007968 4.2e-42 174.5 92 93.5
CAN.G689.14 Capsicum annuum HOM05D006364 ORTHO05D007968 4.2e-42 174.5 92 93.5
Rhsim02G0000900 Rhododendron simsii HOM05D006364 ORTHO05D007968 2.1e-41 172.2 92 89.1
Cc03_g00390 Coffea canephora HOM05D006364 ORTHO05D007968 7.9e-41 170.2 90 90.0
Actinidia02518 Actinidia chinensis HOM05D006364 ORTHO05D007968 1.8e-40 169.1 92 88.0
EL10Ac1g00595 Beta vulgaris HOM05D006364 ORTHO05D007968 5.1e-40 167.5 90 87.8
CSS0027206 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 5.1e-40 167.5 92 88.0
MSTRG.26303 Avicennia marina HOM05D006364 ORTHO05D007968 8.7e-40 166.8 91 87.9
Duzib212G0576 Durio zibethinus HOM05D006364 ORTHO05D007968 8.7e-40 166.8 92 88.0
QL06p013601 Quercus lobata HOM05D006364 ORTHO05D007968 1.1e-39 166.4 91 86.8
Dinv15615 Davidia involucrata HOM05D006364 ORTHO05D007968 1.9e-39 165.6 92 87.0
Cpa.g.sc146.52 Carica papaya HOM05D006364 ORTHO05D007968 2.5e-39 165.2 92 85.9
COL.COLO4_34533 Corchorus olitorius HOM05D006364 ORTHO05D007968 3.3e-39 164.9 92 87.0
Gohir.A02G086100 Gossypium hirsutum HOM05D006364 ORTHO05D007968 3.3e-39 164.9 92 87.0
Gohir.D02G062300 Gossypium hirsutum HOM05D006364 ORTHO05D007968 3.3e-39 164.9 92 87.0
Gorai.005G070100 Gossypium raimondii HOM05D006364 ORTHO05D007968 3.3e-39 164.9 92 87.0
Thecc.04G308800 Theobroma cacao HOM05D006364 ORTHO05D007968 3.3e-39 164.9 92 87.0
Nn3g21850 Nelumbo nucifera HOM05D006364 ORTHO05D007968 4.3e-39 164.5 92 85.9
GSVIVG01017645001 Vitis vinifera HOM05D006364 ORTHO05D007968 4.3e-39 164.5 92 85.9
Actinidia31587 Actinidia chinensis HOM05D006364 ORTHO05D007968 5.7e-39 164.1 92 87.0
Migut.B01021 Erythranthe guttata HOM05D006364 ORTHO05D007968 5.7e-39 164.1 91 85.7
Migut.N00017 Erythranthe guttata HOM05D006364 ORTHO05D007968 5.7e-39 164.1 91 85.7
Hund19242 Selenicereus undatus HOM05D006364 ORTHO05D007968 5.7e-39 164.1 92 85.9
CANSAT78G0762 Cannabis sativa HOM05D006364 ORTHO05D007968 7.4e-39 163.7 92 85.9
Hma1.2p1_0013F.1_g008050 Hydrangea macrophylla HOM05D006364 ORTHO05D007968 7.4e-39 163.7 92 85.9
CiPaw.01G113600 Carya illinoinensis HOM05D006364 ORTHO05D007968 1.3e-38 162.9 90 87.8
THA.LOC104820323 Tarenaya hassleriana HOM05D006364 ORTHO05D007968 1.3e-38 162.9 92 84.8
CSS0032087 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 1.6e-38 162.5 92 87.0
Sed0012877 Sechium edule HOM05D006364 ORTHO05D007968 1.6e-38 162.5 92 83.7
Haze_00814 Corylus avellana HOM05D006364 ORTHO05D007968 2.1e-38 162.2 92 87.0
Glyma.15G136600 Glycine max HOM05D006364 ORTHO05D007968 2.8e-38 161.8 90 86.7
Aa31LG8G4220 Aethionema arabicum HOM05D006364 ORTHO05D007968 4.8e-38 161.0 92 82.6
CsaV3_3G015430 Cucumis sativus L. HOM05D006364 ORTHO05D007968 4.8e-38 161.0 92 82.6
Duzib151G1172 Durio zibethinus HOM05D006364 ORTHO05D007968 6.3e-38 160.6 87 87.4
Psat1g163400 Pisum sativum HOM05D006364 ORTHO05D007968 6.3e-38 160.6 90 85.6
HanXRQChr09g0252081 Helianthus annuus HOM05D006364 ORTHO05D007968 8.2e-38 160.2 88 87.5
Sp3g15490 Schrenkiella parvula HOM05D006364 ORTHO05D007968 1.1e-37 159.8 92 83.7
TWI73G0896 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 1.1e-37 159.8 92 82.6
Phvul.006G121400 Phaseolus vulgaris HOM05D006364 ORTHO05D007968 1.4e-37 159.5 90 84.4
RcHm_v2.0_Chr4g0426541 Rosa chinensis HOM05D006364 ORTHO05D007968 1.4e-37 159.5 90 83.3
Glyma.09G031500 Glycine max HOM05D006364 ORTHO05D007968 1.8e-37 159.1 92 83.7
Lj7E712T1 Lonicera japonica HOM05D006364 ORTHO05D007968 3.1e-37 158.3 87 86.2
Medtr2g032700 Medicago truncatula HOM05D006364 ORTHO05D007968 3.1e-37 158.3 90 81.1
ECA246G0645 Erigeron canadensis HOM05D006364 ORTHO05D007968 4.1e-37 157.9 88 85.2
Eucgr.H04093 Eucalyptus grandis HOM05D006364 ORTHO05D007968 5.3e-37 157.5 92 81.5
AL3G30350 Arabidopsis lyrata HOM05D006364 ORTHO05D007968 6.9e-37 157.1 92 82.6
AT3G17300 Arabidopsis thaliana HOM05D006364 ORTHO05D007968 6.9e-37 157.1 92 82.6
Carub.0003s1701 Capsella rubella HOM05D006364 ORTHO05D007968 6.9e-37 157.1 92 82.6
MELO3C006742.2 Cucumis melo HOM05D006364 ORTHO05D007968 6.9e-37 157.1 92 80.4
Prupe.1G110000 Prunus persica HOM05D006364 ORTHO05D007968 6.9e-37 157.1 90 83.3
arahy.Tifrunner.gnm1.ann1.28BCJ9 Arachis hypogaea HOM05D006364 ORTHO05D007968 9.0e-37 156.8 90 82.2
arahy.Tifrunner.gnm1.ann1.8W9CKH Arachis hypogaea HOM05D006364 ORTHO05D007968 9.0e-37 156.8 90 82.2
arahy.Tifrunner.gnm1.ann1.ZVI86Q Arachis hypogaea HOM05D006364 ORTHO05D007968 9.0e-37 156.8 90 82.2
CDE11G0289 Ceratophyllum demersum HOM05D006364 ORTHO05D007968 1.2e-36 156.4 90 81.1
TPR.G30811 Trifolium pratense HOM05D006364 ORTHO05D007968 1.2e-36 156.4 90 83.3
BcaB04g18937 Brassica carinata HOM05D006364 ORTHO05D007968 1.5e-36 156.0 92 81.5
BcaB04g20848 Brassica carinata HOM05D006364 ORTHO05D007968 1.5e-36 156.0 92 81.5
A03p40140 Brassica napus HOM05D006364 ORTHO05D007968 1.5e-36 156.0 92 81.5
BraA03t13164Z Brassica rapa HOM05D006364 ORTHO05D007968 1.5e-36 156.0 92 81.5
Potri.010G152100 Populus trichocarpa HOM05D006364 ORTHO05D007968 1.5e-36 156.0 92 81.5
unitig_22.g5765 Utricularia gibba HOM05D006364 ORTHO05D007968 1.5e-36 156.0 92 82.6
Lalb_Chr18g0058441 Lupinus albus HOM05D006364 ORTHO05D007968 2.6e-36 155.2 90 82.2
HPP92_017027 Vanilla planifolia HOM05D006364 ORTHO05D007968 2.6e-36 155.2 92 80.4
BcaC01g03770 Brassica carinata HOM05D006364 ORTHO05D007968 3.4e-36 154.8 92 80.4
MD16G1140400 Malus domestica HOM05D006364 ORTHO05D007968 3.4e-36 154.8 92 80.4
Zm00001eb028690 Zea mays HOM05D006364 ORTHO05D007968 3.4e-36 154.8 88 83.0
Lj6g0013185 Lotus japonicus HOM05D006364 ORTHO05D007968 4.5e-36 154.5 90 83.3
BcaC01g03776 Brassica carinata HOM05D006364 ORTHO05D007968 5.9e-36 154.1 92 80.4
C03p48710 Brassica napus HOM05D006364 ORTHO05D007968 5.9e-36 154.1 92 80.4
C03p48760 Brassica napus HOM05D006364 ORTHO05D007968 5.9e-36 154.1 92 80.4
BolC3t17152H Brassica oleracea HOM05D006364 ORTHO05D007968 5.9e-36 154.1 92 80.4
Thhalv10021841m.g Eutrema salsugineum HOM05D006364 ORTHO05D007968 5.9e-36 154.1 92 80.4
BcaC09g48691 Brassica carinata HOM05D006364 ORTHO05D007968 7.6e-36 153.7 92 80.4
C01p46890 Brassica napus HOM05D006364 ORTHO05D007968 7.6e-36 153.7 92 80.4
BolC1t04661H Brassica oleracea HOM05D006364 ORTHO05D007968 7.6e-36 153.7 92 80.4
DCAR_026961 Daucus carota HOM05D006364 ORTHO05D007968 7.6e-36 153.7 90 80.0
FvH4_4g21000 Fragaria vesca HOM05D006364 ORTHO05D007968 7.6e-36 153.7 90 80.0
FAN12G1354 Fragaria x ananassa HOM05D000037 ORTHO05D001684 7.6e-36 153.7 90 80.0
PGR004G1259 Punica granatum HOM05D006364 ORTHO05D007968 1.7e-35 152.5 92 79.3
Zm00001eb418900 Zea mays HOM05D006364 ORTHO05D007968 1.7e-35 152.5 88 81.8
Aqoxy2G02602 Aquilegia oxysepala HOM05D006364 ORTHO05D007968 3.8e-35 151.4 92 82.6
CARHR092600 Cardamine hirsuta HOM05D006364 ORTHO05D007968 5.0e-35 151.0 89 79.8
Potri.008G100400 Populus trichocarpa HOM05D006364 ORTHO05D007968 6.5e-35 150.6 90 78.9
AUR62014465 Chenopodium quinoa HOM05D000862 ORTHO05D000943 1.4e-34 149.4 84 83.3
Os12g0566100 Oryza sativa ssp. japonica HOM05D006364 ORTHO05D007968 1.9e-34 149.1 88 78.4
A01p37010 Brassica napus HOM05D006364 ORTHO05D007968 2.5e-34 148.7 92 78.3
BraA01t03762Z Brassica rapa HOM05D006364 ORTHO05D007968 2.5e-34 148.7 92 78.3
AUR62034532 Chenopodium quinoa HOM05D000862 ORTHO05D000943 4.2e-34 147.9 84 82.1
Rhsim04G0245400 Rhododendron simsii HOM05D006364 ORTHO05D007968 7.2e-34 147.1 135 59.3
Lalb_Chr20g0120331 Lupinus albus HOM05D006364 ORTHO05D007968 1.6e-33 146.0 90 77.8
TWI09G0430 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 3.5e-33 144.8 90 78.9
SHI21779 Sapria himalayana HOM05D006364 ORTHO05D007968 2.8e-30 135.2 82 78.0
PSO210G6302 Papaver somniferum HOM05D006364 ORTHO05D007968 3.7e-30 134.8 92 71.7
PSO761G0417 Papaver somniferum HOM05D006364 ORTHO05D007968 3.7e-30 134.8 92 71.7
ClCG05G006780 Citrullus lanatus HOM05D006364 ORTHO05D007968 1.4e-29 132.9 144 54.9
Manes.03G210000 Manihot esculenta HOM05D006364 ORTHO05D007968 5.3e-29 131.0 92 72.8
AUR62036805 Chenopodium quinoa HOM05D000862 ORTHO05D000943 1.2e-28 129.8 120 57.5
Lsat_1_v5_gn_6_117381 Lactuca sativa HOM05D006364 ORTHO05D007968 1.0e-27 126.7 73 82.2
Sc07g0002970 Simmondsia chinensis HOM05D006364 ORTHO05D007968 2.9e-27 125.2 66 89.4
Ah.05g176740 Amaranthus hybridus HOM05D006364 ORTHO05D007968 1.9e-26 122.5 66 87.9
SalBow4G1453 Salvia bowleyana HOM05D006364 ORTHO05D007968 3.2e-26 121.7 91 68.1
Dinv29542 Davidia involucrata HOM05D006364 ORTHO05D007968 4.2e-26 121.3 66 86.4
MBI18_g09661_MAGBIO Magnolia biondii HOM05D006364 ORTHO05D007968 6.1e-25 117.5 118 58.5
Sed0013937 Sechium edule HOM05D006364 ORTHO05D007968 1.0e-24 116.7 66 81.8
Zm00001eb224320 Zea mays HOM05D006364 ORTHO05D007968 6.7e-24 114.0 65 81.5
Zm00001eb193610 Zea mays HOM05D006364 ORTHO05D007968 1.5e-20 102.8 60 78.3
Hund17201 Selenicereus undatus HOM05D000862 ORTHO05D000943 2.6e-20 102.1 89 62.9
SGA_v2.0_scaffold449G51796 Striga asiatica HOM05D006364 ORTHO05D007968 3.4e-20 101.7 94 62.8
SalBow6G4934 Salvia bowleyana HOM05D006364 ORTHO05D007968 5.9e-20 100.9 97 53.6
EL10Ac3g06351 Beta vulgaris HOM05D006364 ORTHO05D007968 2.9e-19 98.6 58 74.1
Zm00001eb137950 Zea mays HOM05D006364 ORTHO05D007968 1.4e-18 96.3 57 75.4
BraA01t03642Z Brassica rapa HOM05D006364 ORTHO05D007968 8.8e-16 87.0 72 65.3
Pp3c26_11720 Physcomitrium patens HOM05D006364 ORTHO05D007968 2.6e-15 85.5 83 45.8
AagrBONN_evm.TU.Sc2ySwM_368.2196 Anthoceros agrestis HOM05D006364 ORTHO05D007968 7.4e-15 84.0 83 47.0
SMO196G0146 Selaginella moellendorffii HOM05D006364 ORTHO05D007968 9.7e-15 83.6 69 52.2
vmacro07987 Vaccinium macrocarpon HOM05D006364 ORTHO05D007968 9.7e-15 83.6 107 46.7
A01p35610 Brassica napus HOM05D006364 ORTHO05D007968 1.3e-14 83.2 72 62.5
Cfa015704 Carpinus fangiana HOM05D006364 ORTHO05D007968 7.0e-13 77.4 66 63.6
MD13G1146500 Malus domestica HOM05D006364 ORTHO05D007968 2.9e-11 72.0 56 66.1
Cre14.g626250 Chlamydomonas reinhardtii HOM05D006364 ORTHO05D007968 1.0e-08 63.5 64 46.9
Actinidia07522 Actinidia chinensis HOM05D006364 ORTHO05D007968 8.8e-08 60.5 43 67.4
SalBow3G2548 Salvia bowleyana HOM05D006364 ORTHO05D007968 1.1e-07 60.1 64 45.3
MCO05G593 Micromonas commoda HOM05D006364 ORTHO05D007968 3.3e-07 58.5 71 39.4
Ciclev10027020m.g Citrus clementina HOM05D006364 ORTHO05D007968 2.2e-06 55.8 138 34.8


User provided reference genes

Program Settings