Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003101g0010 Nicotiana tabacum HOM05D006138 ORTHO05D007778 6.4e-219 763.8 399 100.0
Nitab4.5_0000401g0220 Nicotiana tabacum HOM05D006138 ORTHO05D007778 4.2e-202 708.0 416 90.6
Sopen09g035050 Solanum pennellii HOM05D006138 ORTHO05D007778 1.0e-152 543.9 417 72.9
Solyc09g092180.3 Solanum lycopersicum HOM05D006138 ORTHO05D007778 1.4e-152 543.5 417 72.4
Peaxi162Scf00047g00230 Petunia axillaris HOM05D006138 ORTHO05D007778 8.5e-147 524.2 417 70.5
PGSC0003DMG400026422 Solanum tuberosum HOM05D006138 ORTHO05D007778 8.8e-136 487.6 367 74.1
CAN.G1565.12 Capsicum annuum HOM05D006138 ORTHO05D007778 1.2e-129 467.2 369 71.5
Dinv27208 Davidia involucrata HOM05D006138 ORTHO05D007778 7.5e-111 404.8 409 54.3
Cc03_g08330 Coffea canephora HOM05D006138 ORTHO05D007778 1.5e-98 364.0 413 51.1
TAR362G0162 Trochodendron aralioides HOM05D006138 ORTHO05D007778 1.6e-97 360.5 408 48.8
Oeu025031.1 Olea europaea HOM05D006138 ORTHO05D007778 4.0e-96 355.9 408 49.5
Actinidia38756 Actinidia chinensis HOM05D006138 ORTHO05D007778 3.4e-95 352.8 410 49.0
Lj6A392G25 Lonicera japonica HOM05D006138 ORTHO05D007778 3.4e-95 352.8 444 47.3
vmacro15557 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 7.6e-95 351.7 414 48.8
Lj6A407G21 Lonicera japonica HOM05D006138 ORTHO05D007778 1.3e-94 350.9 436 47.7
Thecc.04G198400 Theobroma cacao HOM05D006138 ORTHO05D007778 2.2e-94 350.1 409 47.2
Cpa.g.sc83.29 Carica papaya HOM05D006138 ORTHO05D007778 1.6e-92 344.0 408 47.1
GSVIVG01020999001 Vitis vinifera HOM05D006138 ORTHO05D007778 1.7e-91 340.5 410 47.1
Gorai.009G350500 Gossypium raimondii HOM05D006138 ORTHO05D007778 3.9e-91 339.3 410 47.3
Gohir.A05G323100 Gossypium hirsutum HOM05D006138 ORTHO05D007778 5.1e-91 339.0 410 46.6
Nn1g07955 Nelumbo nucifera HOM05D006138 ORTHO05D007778 2.5e-90 336.7 407 47.4
Gohir.D05G326000 Gossypium hirsutum HOM05D006138 ORTHO05D007778 6.2e-89 332.0 410 46.8
TWI09G0334 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 8.1e-89 331.6 408 46.1
Cfa014952 Carpinus fangiana HOM05D006138 ORTHO05D007778 2.4e-88 330.1 408 46.3
Atru.chr4.1604 Acer truncatum HOM05D006138 ORTHO05D007778 5.2e-88 328.9 383 48.0
Rhsim02G0060900 Rhododendron simsii HOM05D006138 ORTHO05D007778 2.4e-85 320.1 551 38.8
Manes.15G055900 Manihot esculenta HOM05D006138 ORTHO05D007778 3.2e-85 319.7 366 49.2
RhsimUnG0035600 Rhododendron simsii HOM05D006138 ORTHO05D007778 4.2e-85 319.3 534 40.3
TWI53G0419 Tripterygium wilfordii HOM05D006138 ORTHO05D007778 2.1e-84 317.0 408 44.9
CiPaw.02G065100 Carya illinoinensis HOM05D006138 ORTHO05D007778 6.0e-84 315.5 409 44.5
vmacro15559 Vaccinium macrocarpon HOM05D006138 ORTHO05D007778 6.0e-84 315.5 406 46.1
MSTRG.9735 Avicennia marina HOM05D006138 ORTHO05D007778 3.0e-83 313.2 417 45.1
Migut.G00745 Erythranthe guttata HOM05D006138 ORTHO05D007778 1.1e-82 311.2 410 46.3
Potri.001G317900 Populus trichocarpa HOM05D006138 ORTHO05D007778 3.3e-82 309.7 411 44.5
SalBow8G0822 Salvia bowleyana HOM05D006138 ORTHO05D007778 7.3e-82 308.5 372 49.7
SalBow8G2056 Salvia bowleyana HOM05D006138 ORTHO05D007778 9.6e-82 308.1 372 49.7
Lsat_1_v5_gn_6_60661 Lactuca sativa HOM05D006138 ORTHO05D007778 3.1e-80 303.1 414 43.7
Sc13g0000300 Simmondsia chinensis HOM05D006138 ORTHO05D007778 1.2e-79 301.2 417 43.2
CANSAT78G1344 Cannabis sativa HOM05D006138 ORTHO05D007778 9.9e-79 298.1 408 43.1
PSO017G1394 Papaver somniferum HOM05D006138 ORTHO05D007778 9.9e-79 298.1 417 42.2
CANSAT78G2425 Cannabis sativa HOM05D006138 ORTHO05D007778 3.8e-78 296.2 408 43.1
DCAR_026640 Daucus carota HOM05D006138 ORTHO05D007778 3.8e-78 296.2 402 45.3
Nitab4.5_0001652g0120 Nicotiana tabacum HOM05D006138 ORTHO05D007778 1.4e-77 294.3 258 66.3
THA.LOC104804805 Tarenaya hassleriana HOM05D006138 ORTHO05D007778 1.4e-77 294.3 407 40.5
Sp3g21610 Schrenkiella parvula HOM05D006138 ORTHO05D007778 2.4e-77 293.5 407 42.0
AL3G38900 Arabidopsis lyrata HOM05D006138 ORTHO05D007778 4.2e-77 292.7 417 41.5
SGA_v2.0_scaffold19G08768 Striga asiatica HOM05D006138 ORTHO05D007778 9.3e-77 291.6 410 42.9
Carub.0003s2421 Capsella rubella HOM05D006138 ORTHO05D007778 3.5e-76 289.7 417 41.2
MD04G1014100 Malus domestica HOM05D006138 ORTHO05D007778 2.3e-75 287.0 410 41.5
CSS0014339 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 1.1e-74 284.6 257 58.4
COL.COLO4_20197 Corchorus olitorius HOM05D006138 ORTHO05D007778 5.6e-74 282.3 396 44.4
CsaV3_3G010820 Cucumis sativus L. HOM05D006138 ORTHO05D007778 7.4e-74 282.0 401 43.1
Aa31LG8G10490 Aethionema arabicum HOM05D006138 ORTHO05D007778 1.6e-73 280.8 413 39.0
AT3G23910 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 4.8e-73 279.3 418 40.2
CSS0015025 Camellia sinensis var. sinensis HOM05D006138 ORTHO05D007778 1.1e-72 278.1 257 57.2
HanXRQChr07g0185891 Helianthus annuus HOM05D006138 ORTHO05D007778 2.4e-72 276.9 408 41.2
Sabra16G0201200 Salix brachista HOM05D006138 ORTHO05D007778 4.5e-71 272.7 511 36.0
A07p08490 Brassica napus HOM05D006138 ORTHO05D007778 5.8e-71 272.3 412 40.0
Sed0019269 Sechium edule HOM05D006138 ORTHO05D007778 2.9e-70 270.0 410 40.2
Thhalv10002763m.g Eutrema salsugineum HOM05D006138 ORTHO05D007778 1.1e-69 268.1 329 45.6
BcaC06g35587 Brassica carinata HOM05D006138 ORTHO05D007778 1.9e-69 267.3 417 39.1
C07p13230 Brassica napus HOM05D006138 ORTHO05D007778 1.9e-69 267.3 417 39.1
AT3G24255 Arabidopsis thaliana HOM05D006138 ORTHO05D007778 3.2e-69 266.5 425 39.3
BraA07t28634Z Brassica rapa HOM05D006138 ORTHO05D007778 7.1e-69 265.4 424 38.9
BolC7t41815H Brassica oleracea HOM05D006138 ORTHO05D007778 1.2e-68 264.6 424 38.4
ClCG05G003180 Citrullus lanatus HOM05D006138 ORTHO05D007778 2.3e-67 260.4 383 42.0
Eucgr.H00039 Eucalyptus grandis HOM05D006138 ORTHO05D007778 6.7e-67 258.8 381 42.0
ECA233G3278 Erigeron canadensis HOM05D006138 ORTHO05D007778 8.7e-67 258.5 385 42.1
PSO063G4547 Papaver somniferum HOM05D006138 ORTHO05D007778 8.7e-67 258.5 385 41.0
PGR004G2157 Punica granatum HOM05D006138 ORTHO05D007778 4.8e-65 252.7 411 38.7
BcaB06g26554 Brassica carinata HOM05D006138 ORTHO05D007778 8.1e-65 251.9 416 38.7
AUR62020846 Chenopodium quinoa HOM05D006138 ORTHO05D007778 1.5e-63 247.7 384 38.0
CDE05G2116 Ceratophyllum demersum HOM05D006138 ORTHO05D007778 2.2e-62 243.8 330 43.0
QL10p052654 Quercus lobata HOM05D006138 ORTHO05D007778 4.9e-62 242.7 541 32.5
VMungo1383G1063 Vigna mungo HOM05D000127 ORTHO05D000243 6.5e-62 242.3 403 37.0
Eucgr.L02926 Eucalyptus grandis HOM05D006138 ORTHO05D007778 5.5e-61 239.2 374 40.1
Lj6g0009885 Lotus japonicus HOM05D006138 ORTHO05D007778 3.5e-60 236.5 407 36.6
Aqoxy2G04005 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 4.6e-60 236.1 404 40.1
Ca_16395_v3 Cicer arietinum L. HOM05D006138 ORTHO05D007778 1.3e-59 234.6 397 35.8
Aqoxy360s001 Aquilegia oxysepala HOM05D006138 ORTHO05D007778 2.3e-59 233.8 360 41.7
Glyma.11G255500 Glycine max HOM05D006138 ORTHO05D007778 1.1e-56 224.9 391 35.8
Phvul.001G267400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 2.6e-55 220.3 373 37.3
Ah.04g149320 Amaranthus hybridus HOM05D006138 ORTHO05D007778 5.9e-55 219.2 332 41.6
arahy.Tifrunner.gnm1.ann1.3M33GA Arachis hypogaea HOM05D006138 ORTHO05D007778 3.2e-53 213.4 408 34.8
arahy.Tifrunner.gnm1.ann1.HYZ2KB Arachis hypogaea HOM05D006138 ORTHO05D007778 1.2e-52 211.5 408 34.3
AUR62018570 Chenopodium quinoa HOM05D006138 ORTHO05D007778 1.6e-49 201.1 388 33.5
Lalb_Chr23g0278421 Lupinus albus HOM05D006138 ORTHO05D007778 6.3e-49 199.1 347 36.3
EL10Ac3g07466 Beta vulgaris HOM05D006138 ORTHO05D007778 1.1e-48 198.4 393 34.6
Psat5g102360 Pisum sativum HOM05D006138 ORTHO05D007778 5.9e-47 192.6 401 32.2
Gohir.A12G078622 Gossypium hirsutum HOM05D006138 ORTHO05D007778 1.0e-46 191.8 271 41.7
HPP92_023190 Vanilla planifolia HOM05D006138 ORTHO05D007778 1.7e-46 191.0 398 33.2
Ciclev10005758m.g Citrus clementina HOM05D006138 ORTHO05D007778 2.9e-46 190.3 174 54.6
Haze_11642 Corylus avellana HOM05D006138 ORTHO05D007778 1.4e-45 188.0 361 37.1
RcHm_v2.0_Chr4g0414021 Rosa chinensis HOM05D006138 ORTHO05D007778 1.6e-44 184.5 303 39.3
Hma1.2p1_0017F.1_g011170 Hydrangea macrophylla HOM05D006138 ORTHO05D007778 7.9e-44 182.2 245 44.1
Os04g0379800 Oryza sativa ssp. japonica HOM05D006138 ORTHO05D007778 1.0e-43 181.8 333 35.4
unitig_37.g12032 Utricularia gibba HOM05D006138 ORTHO05D007778 3.3e-42 176.8 356 37.9
Oeu025032.1 Olea europaea HOM05D006138 ORTHO05D007778 1.4e-40 171.4 135 65.9
Glyma.18G001700 Glycine max HOM05D006138 ORTHO05D007778 5.3e-40 169.5 203 44.3
FvH4_4g13460 Fragaria vesca HOM05D006138 ORTHO05D007778 1.4e-37 161.4 310 37.4
FAN12G1205 Fragaria x ananassa HOM05D006138 ORTHO05D007778 1.4e-37 161.4 310 37.4
FAN22G1553 Fragaria x ananassa HOM05D006138 ORTHO05D007778 2.7e-36 157.1 308 36.4
TPR.G24162 Trifolium pratense HOM05D006138 ORTHO05D007778 1.1e-34 151.8 287 34.5
Prupe.1G161100 Prunus persica HOM05D006138 ORTHO05D007778 4.4e-34 149.8 281 33.5
Duzib268G1255 Durio zibethinus HOM05D006138 ORTHO05D007778 4.1e-32 143.3 119 58.8
Gohir.D12G210200 Gossypium hirsutum HOM05D006138 ORTHO05D007778 4.1e-32 143.3 233 38.6
Hund24401 Selenicereus undatus HOM05D006138 ORTHO05D007778 1.8e-27 127.9 256 36.3
MELO3C006299.2 Cucumis melo HOM05D006138 ORTHO05D007778 1.1e-26 125.2 245 35.9
RcHm_v2.0_Chr4g0414071 Rosa chinensis HOM05D006138 ORTHO05D007778 1.6e-23 114.8 120 55.0
Zm00001eb085830 Zea mays HOM05D006138 ORTHO05D007778 1.0e-19 102.1 332 26.2
FAN07G2199 Fragaria x ananassa HOM05D006138 ORTHO05D007778 3.0e-19 100.5 242 31.8
Pp3c4_4010 Physcomitrium patens HOM05D058747 ORTHO05D007778 5.4e-16 89.7 264 28.0
Hund29337 Selenicereus undatus HOM05D006138 ORTHO05D007778 2.7e-15 87.4 68 57.4
Hund29338 Selenicereus undatus HOM05D006138 ORTHO05D007778 2.7e-15 87.4 68 57.4
Actinidia16488 Actinidia chinensis HOM05D006138 ORTHO05D007778 7.7e-15 85.9 74 58.1
Phvul.001G135400 Phaseolus vulgaris HOM05D006138 ORTHO05D007778 9.5e-13 79.0 106 38.7
Nn1g00061 Nelumbo nucifera HOM05D006138 ORTHO05D007778 9.2e-08 62.4 153 29.4
Duzib268G0147 Durio zibethinus HOM05D006138 ORTHO05D007778 1.7e-06 58.2 131 34.4
Duzib268G0476 Durio zibethinus HOM05D006138 ORTHO05D007778 1.7e-06 58.2 131 34.4
SHI01022 Sapria himalayana HOM05D006138 ORTHO05D007778 1.7e-06 58.2 77 41.6


User provided reference genes

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