Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003092g0080 Nicotiana tabacum HOM05D006834 ORTHO05D008623 6.0e-250 867.1 450 100.0
Nitab4.5_0007915g0010 Nicotiana tabacum HOM05D006834 ORTHO05D008623 4.5e-237 824.3 450 95.1
PGSC0003DMG401001116 Solanum tuberosum HOM05D006834 ORTHO05D008623 9.1e-206 720.3 438 83.8
CAN.G179.29 Capsicum annuum HOM05D006834 ORTHO05D008623 1.1e-203 713.4 449 82.4
Sopen01g030580 Solanum pennellii HOM05D006834 ORTHO05D008623 3.1e-198 695.3 451 80.7
Dinv12076 Davidia involucrata HOM05D006834 ORTHO05D008623 8.2e-122 441.4 412 57.5
CSS0011680 Camellia sinensis var. sinensis HOM05D006834 ORTHO05D008623 4.5e-120 435.6 410 54.9
vmacro15952 Vaccinium macrocarpon HOM05D006834 ORTHO05D008623 1.4e-118 430.6 402 55.0
Actinidia21334 Actinidia chinensis HOM05D006834 ORTHO05D008623 1.6e-117 427.2 403 54.6
Oeu008276.1 Olea europaea HOM05D006834 ORTHO05D008623 6.7e-116 421.8 472 51.1
Rhsim01G0000800 Rhododendron simsii HOM05D006834 ORTHO05D008623 4.3e-115 419.1 430 52.8
Cc01_g21740 Coffea canephora HOM05D006834 ORTHO05D008623 9.7e-115 417.9 414 56.0
QL12p035081 Quercus lobata HOM05D006834 ORTHO05D008623 1.1e-113 414.5 410 54.4
QL12p035100 Quercus lobata HOM05D006834 ORTHO05D008623 1.1e-113 414.5 410 54.4
PGR042G0322 Punica granatum HOM05D006834 ORTHO05D008623 5.3e-113 412.1 403 55.8
TAR636G0448 Trochodendron aralioides HOM05D006834 ORTHO05D008623 6.9e-113 411.8 411 53.0
Lalb_Chr18g0046351 Lupinus albus HOM05D006834 ORTHO05D008623 1.3e-111 407.5 405 52.3
Nn4g25303 Nelumbo nucifera HOM05D006834 ORTHO05D008623 1.7e-111 407.1 429 50.3
GSVIVG01028237001 Vitis vinifera HOM05D006834 ORTHO05D008623 2.9e-111 406.4 415 52.5
Eucgr.A00997 Eucalyptus grandis HOM05D006834 ORTHO05D008623 1.4e-110 404.1 436 52.1
CiPaw.08G082000 Carya illinoinensis HOM05D006834 ORTHO05D008623 1.9e-110 403.7 441 50.6
Duzib138G0585 Durio zibethinus HOM05D006834 ORTHO05D008623 6.1e-109 398.7 417 51.3
Sabra02G0148600 Salix brachista HOM05D006834 ORTHO05D008623 1.0e-108 397.9 422 50.9
Atru.chr5.848 Acer truncatum HOM05D006834 ORTHO05D008623 5.1e-108 395.6 416 53.1
Thecc.01G326600 Theobroma cacao HOM05D006834 ORTHO05D008623 6.7e-108 395.2 400 53.5
Cpa.g.sc57.31 Carica papaya HOM05D006834 ORTHO05D008623 2.0e-107 393.7 405 52.8
TWI14G0919 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 7.4e-107 391.7 413 51.3
VMungo1383G1632 Vigna mungo HOM05D006834 ORTHO05D008623 9.7e-107 391.3 416 48.6
Cfa004921 Carpinus fangiana HOM05D006834 ORTHO05D008623 3.7e-106 389.4 416 50.0
Phvul.001G218900 Phaseolus vulgaris HOM05D006834 ORTHO05D008623 3.7e-106 389.4 416 48.1
Aqoxy2G02436 Aquilegia oxysepala HOM05D006834 ORTHO05D008623 6.3e-106 388.7 391 52.7
Gorai.008G133900 Gossypium raimondii HOM05D006834 ORTHO05D008623 1.4e-105 387.5 404 51.0
Glyma.19G222100 Glycine max HOM05D006834 ORTHO05D008623 2.4e-105 386.7 404 49.8
Gohir.A12G119200 Gossypium hirsutum HOM05D006834 ORTHO05D008623 2.4e-105 386.7 404 51.0
TPR.G8370 Trifolium pratense HOM05D006834 ORTHO05D008623 3.1e-105 386.3 410 50.2
Lsat_1_v5_gn_8_167261 Lactuca sativa HOM05D006834 ORTHO05D008623 9.1e-105 384.8 414 51.7
Psat3g017400 Pisum sativum HOM05D006834 ORTHO05D008623 9.1e-105 384.8 411 50.1
MBI18_g03845_MAGBIO Magnolia biondii HOM05D006834 ORTHO05D008623 1.2e-104 384.4 382 51.8
MD09G1291400 Malus domestica HOM05D006834 ORTHO05D008623 1.2e-104 384.4 413 53.0
Lj1g0008019 Lotus japonicus HOM05D006834 ORTHO05D008623 1.5e-104 384.0 404 49.8
Potri.002G186100 Populus trichocarpa HOM05D006834 ORTHO05D008623 2.6e-104 383.3 406 50.7
PSO210G3353 Papaver somniferum HOM05D006834 ORTHO05D008623 5.9e-104 382.1 378 52.6
Medtr7g110820 Medicago truncatula HOM05D006834 ORTHO05D008623 7.7e-104 381.7 419 48.7
PSO761G0283 Papaver somniferum HOM05D006834 ORTHO05D008623 1.7e-103 380.6 378 52.1
TWI59G0932 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 9.4e-102 374.8 407 49.9
AUR62032606 Chenopodium quinoa HOM05D006834 ORTHO05D008623 6.1e-101 372.1 418 48.1
CANSAT25G0194 Cannabis sativa HOM05D006834 ORTHO05D008623 8.0e-101 371.7 405 49.1
HanXRQChr06g0167961 Helianthus annuus HOM05D006834 ORTHO05D008623 2.3e-100 370.2 397 51.6
Peaxi162Scf00309g00622 Petunia axillaris HOM05D006834 ORTHO05D008623 8.8e-100 368.2 239 84.9
Ciclev10020225m.g Citrus clementina HOM05D006834 ORTHO05D008623 1.5e-99 367.5 360 54.4
Sed0016094 Sechium edule HOM05D006834 ORTHO05D008623 2.0e-99 367.1 412 47.1
CsaV3_5G017580 Cucumis sativus L. HOM05D006834 ORTHO05D008623 3.3e-99 366.3 419 47.7
AT3G62080 Arabidopsis thaliana HOM05D006834 ORTHO05D008623 1.1e-97 361.3 416 48.3
ClCG01G007130 Citrullus lanatus HOM05D006834 ORTHO05D008623 1.1e-97 361.3 420 46.7
AUR62001071 Chenopodium quinoa HOM05D006834 ORTHO05D008623 1.4e-97 360.9 418 46.9
Carub.0005s2883 Capsella rubella HOM05D006834 ORTHO05D008623 3.1e-97 359.8 426 47.9
Haze_05159 Corylus avellana HOM05D006834 ORTHO05D008623 3.1e-97 359.8 418 47.6
CARHR172420 Cardamine hirsuta HOM05D006834 ORTHO05D008623 2.0e-96 357.1 411 48.7
Migut.D01683 Erythranthe guttata HOM05D006834 ORTHO05D008623 2.9e-95 353.2 422 48.1
AL5G44760 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 3.8e-95 352.8 417 48.2
ECA236G2058 Erigeron canadensis HOM05D006834 ORTHO05D007803 5.0e-95 352.4 384 50.5
Aa31LG10G16050 Aethionema arabicum HOM05D006834 ORTHO05D008623 1.5e-94 350.9 362 51.7
AL5G44880 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 1.5e-94 350.9 369 51.8
Thhalv10005996m.g Eutrema salsugineum HOM05D006834 ORTHO05D008623 1.9e-94 350.5 418 47.4
C08p37040 Brassica napus HOM05D006834 ORTHO05D008623 4.2e-94 349.4 417 48.2
BolC8t51281H Brassica oleracea HOM05D006834 ORTHO05D008623 4.2e-94 349.4 417 47.7
Sp5g01290 Schrenkiella parvula HOM05D006834 ORTHO05D008623 4.2e-94 349.4 418 48.3
Solyc01g079060.4 Solanum lycopersicum HOM05D006834 ORTHO05D008623 7.2e-94 348.6 214 79.0
MELO3C005199.2 Cucumis melo HOM05D006834 ORTHO05D008623 9.4e-94 348.2 429 45.5
ATR0796G131 Amborella trichopoda HOM05D006834 ORTHO05D008623 2.7e-93 346.7 379 48.5
A09p54180 Brassica napus HOM05D006834 ORTHO05D008623 4.7e-93 345.9 417 47.7
MSTRG.21731 Avicennia marina HOM05D006834 ORTHO05D008623 6.1e-93 345.5 428 48.6
BraA09t40830Z Brassica rapa HOM05D006834 ORTHO05D008623 8.0e-93 345.1 430 47.4
arahy.Tifrunner.gnm1.ann1.AJ9Z2K Arachis hypogaea HOM05D006834 ORTHO05D008623 1.5e-91 340.9 411 44.5
Ah.12g061380 Amaranthus hybridus HOM05D006834 ORTHO05D008623 4.4e-91 339.3 407 46.4
SGA_v2.0_scaffold310G48195 Striga asiatica HOM05D006834 ORTHO05D008623 5.7e-91 339.0 428 47.0
FAN19G1238 Fragaria x ananassa HOM05D006834 ORTHO05D008623 1.7e-90 337.4 419 46.8
RcHm_v2.0_Chr3g0485641 Rosa chinensis HOM05D006834 ORTHO05D008623 8.3e-90 335.1 351 52.1
FvH4_1g26150 Fragaria vesca HOM05D006834 ORTHO05D008623 4.1e-89 332.8 428 45.8
arahy.Tifrunner.gnm1.ann1.W0LIHS Arachis hypogaea HOM05D006834 ORTHO05D008623 2.7e-88 330.1 437 42.3
BcaC07g40700 Brassica carinata HOM05D006834 ORTHO05D008623 4.5e-88 329.3 417 46.5
FAN26G0527 Fragaria x ananassa HOM05D006834 ORTHO05D008623 1.1e-86 324.7 413 46.0
Ca_09251_v3 Cicer arietinum L. HOM05D006834 ORTHO05D008623 1.9e-86 323.9 301 54.2
FAN23G1444 Fragaria x ananassa HOM05D006834 ORTHO05D008623 7.2e-86 322.0 421 45.1
THA.LOC104817424 Tarenaya hassleriana HOM05D006834 ORTHO05D008623 2.7e-85 320.1 415 44.3
EL10Ac9g22392 Beta vulgaris HOM05D006834 ORTHO05D008623 7.5e-83 312.0 340 47.4
CDE01G0777 Ceratophyllum demersum HOM05D006834 ORTHO05D008623 1.5e-78 297.7 372 44.1
DCAR_012294 Daucus carota HOM05D006834 ORTHO05D008623 3.6e-77 293.1 441 42.6
COL.COLO4_23116 Corchorus olitorius HOM05D006834 ORTHO05D008623 4.0e-76 289.7 337 50.1
Manes.05G007900 Manihot esculenta HOM05D006834 ORTHO05D008623 4.4e-75 286.2 323 48.9
AUR62031719 Chenopodium quinoa HOM05D006834 ORTHO05D008623 1.0e-71 275.0 417 40.0
Gohir.D12G123000 Gossypium hirsutum HOM05D006834 ORTHO05D008623 2.9e-71 273.5 310 49.0
Hma1.2p1_0408F.1_g146240 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 9.2e-65 251.9 268 51.5
Os01g0286000 Oryza sativa ssp. japonica HOM05D006834 ORTHO05D008623 3.9e-63 246.5 421 37.3
Prupe.3G001500 Prunus persica HOM05D006834 ORTHO05D008623 5.6e-62 242.7 320 46.6
Peaxi162Scf00309g00627 Petunia axillaris HOM05D006834 ORTHO05D008623 8.9e-60 235.3 215 60.5
Pp3c3_29200 Physcomitrium patens HOM05D006834 ORTHO05D008623 2.6e-59 233.8 370 37.0
Mapoly0053s0040 Marchantia polymorpha HOM05D006834 ORTHO05D008623 1.3e-58 231.5 412 35.4
Zm00001eb129510 Zea mays HOM05D006834 ORTHO05D008623 1.9e-57 227.6 360 38.6
HPP92_001172 Vanilla planifolia HOM05D006834 ORTHO05D008623 3.3e-54 216.9 237 49.4
SMO339G0071 Selaginella moellendorffii HOM05D006834 ORTHO05D008623 2.1e-53 214.2 393 34.4
Sc05g0000050 Simmondsia chinensis HOM05D006834 ORTHO05D008623 1.4e-52 211.5 202 51.5
Hma1.2p1_1735F.1_g299880 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 5.8e-27 126.3 85 70.6
CBR_g12374 Chara braunii HOM05D006834 ORTHO05D008623 1.9e-17 94.7 237 29.1
MELO3C028884.2 Cucumis melo HOM05D006834 ORTHO05D008623 3.2e-17 94.0 118 44.1
MELO3C033776.2 Cucumis melo HOM05D006834 ORTHO05D008623 2.1e-16 91.3 68 57.4
MELO3C032404.2 Cucumis melo HOM05D006834 ORTHO05D008623 6.7e-15 86.3 55 65.5
MELO3C005268.2 Cucumis melo HOM05D006834 ORTHO05D008623 2.1e-13 81.3 68 54.4
HPP92_010139 Vanilla planifolia HOM05D006834 ORTHO05D008623 9.0e-12 75.9 116 43.1
Sc05g0000060 Simmondsia chinensis HOM05D006834 ORTHO05D008623 2.1e-08 64.7 96 41.7
SEGI_05800 Sequoiadendron giganteum HOM05D001726 ORTHO05D001761 6.1e-08 63.2 140 29.3
ATR1127G038 Amborella trichopoda HOM05D001726 ORTHO05D001761 3.0e-07 60.8 187 28.3
CDE02G2196 Ceratophyllum demersum HOM05D000074 ORTHO05D000220 3.9e-07 60.5 142 31.0
Pp3c4_3530 Physcomitrium patens HOM05D001726 ORTHO05D001761 3.9e-07 60.5 141 30.5
Pp3c12_22980 Physcomitrium patens HOM05D001726 ORTHO05D001761 8.7e-07 59.3 141 29.8
Pp3c3_36260 Physcomitrium patens HOM05D001726 ORTHO05D001761 8.7e-07 59.3 141 29.8
Mapoly0016s0116 Marchantia polymorpha HOM05D001726 ORTHO05D001761 1.1e-06 58.9 141 29.8
Oeu000335.2 Olea europaea HOM05D001726 ORTHO05D001761 1.1e-06 58.9 150 28.7
Migut.E01549 Erythranthe guttata HOM05D001726 ORTHO05D001761 1.5e-06 58.5 158 31.0
Migut.K00569 Erythranthe guttata HOM05D001726 ORTHO05D001761 1.5e-06 58.5 157 30.6
Psat7g019280 Pisum sativum HOM05D001726 ORTHO05D001761 1.5e-06 58.5 173 30.1
ECA233G4477 Erigeron canadensis HOM05D001726 ORTHO05D001761 1.9e-06 58.2 164 26.8
Os12g0121400 Oryza sativa ssp. japonica HOM05D001726 ORTHO05D001761 1.9e-06 58.2 162 28.4
QL02p001812 Quercus lobata HOM05D001726 ORTHO05D001761 1.9e-06 58.2 174 27.6
Sed0020053 Sechium edule HOM05D001726 ORTHO05D001761 1.9e-06 58.2 141 29.1
Actinidia39753 Actinidia chinensis HOM05D001726 ORTHO05D001761 2.5e-06 57.8 141 29.1
AagrBONN_evm.TU.Sc2ySwM_344.2534 Anthoceros agrestis HOM05D001726 ORTHO05D001761 2.5e-06 57.8 141 28.4
MSTRG.6034 Avicennia marina HOM05D001726 ORTHO05D001761 2.5e-06 57.8 141 29.8
Lj4A321T29 Lonicera japonica HOM05D001726 ORTHO05D001761 2.5e-06 57.8 141 29.1
SEGI_13895 Sequoiadendron giganteum HOM05D001726 ORTHO05D001761 2.5e-06 57.8 141 28.4
Actinidia29894 Actinidia chinensis HOM05D001726 ORTHO05D001761 3.3e-06 57.4 141 29.1
BcaNung00459 Brassica carinata HOM05D001726 ORTHO05D001761 3.3e-06 57.4 167 28.1
CSS0012778 Camellia sinensis var. sinensis HOM05D001726 ORTHO05D001761 3.3e-06 57.4 141 29.1
Dinv36725 Davidia involucrata HOM05D001726 ORTHO05D001761 3.3e-06 57.4 141 29.1
Lsat_1_v5_gn_6_7580 Lactuca sativa HOM05D001726 ORTHO05D001761 3.3e-06 57.4 170 27.6
Lalb_Chr16g0390961 Lupinus albus HOM05D001726 ORTHO05D001761 3.3e-06 57.4 170 28.2
Nn6g35374 Nelumbo nucifera HOM05D001726 ORTHO05D001761 3.3e-06 57.4 173 30.1
Os11g0123500 Oryza sativa ssp. japonica HOM05D001726 ORTHO05D001761 3.3e-06 57.4 208 26.0
CiPaw.04G153600 Carya illinoinensis HOM05D001726 ORTHO05D001761 5.7e-06 56.6 151 27.2
Cc06_g10890 Coffea canephora HOM05D001726 ORTHO05D001761 5.7e-06 56.6 141 28.4
Glyma.01G004500 Glycine max HOM05D001726 ORTHO05D001761 5.7e-06 56.6 246 22.4
Gohir.D05G029300 Gossypium hirsutum HOM05D001726 ORTHO05D001761 5.7e-06 56.6 154 29.9
Gohir.D07G010000 Gossypium hirsutum HOM05D001726 ORTHO05D001761 5.7e-06 56.6 157 29.9
Gohir.D08G265200 Gossypium hirsutum HOM05D001726 ORTHO05D001761 5.7e-06 56.6 141 30.5
Gorai.001G010300 Gossypium raimondii HOM05D001726 ORTHO05D001761 5.7e-06 56.6 157 29.9
Gorai.004G283100 Gossypium raimondii HOM05D001726 ORTHO05D001761 5.7e-06 56.6 141 30.5
Gorai.009G029400 Gossypium raimondii HOM05D001726 ORTHO05D001761 5.7e-06 56.6 154 29.9
Hma1.2p1_0663F.1_g198620 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 5.7e-06 56.6 141 29.1
Lj4g0009594 Lotus japonicus HOM05D001726 ORTHO05D001761 5.7e-06 56.6 174 27.0
Pp3c8_3630 Physcomitrium patens HOM05D001726 ORTHO05D001761 5.7e-06 56.6 186 27.4
Sed0005762 Sechium edule HOM05D001726 ORTHO05D001761 5.7e-06 56.6 141 29.1
THA.LOC104804001 Tarenaya hassleriana HOM05D001726 ORTHO05D001761 5.7e-06 56.6 141 29.1
TAR626G1982 Trochodendron aralioides HOM05D001726 ORTHO05D001761 5.7e-06 56.6 183 30.1
Ah.04g162520 Amaranthus hybridus HOM05D001726 ORTHO05D001761 7.4e-06 56.2 183 27.3
AL3G48370 Arabidopsis lyrata HOM05D001726 ORTHO05D001761 7.4e-06 56.2 141 28.4
ClCG11G001910 Citrullus lanatus HOM05D001726 ORTHO05D001761 7.4e-06 56.2 141 29.1
ECA236G0677 Erigeron canadensis HOM05D001726 ORTHO05D001761 7.4e-06 56.2 173 29.5
Gohir.A05G027400 Gossypium hirsutum HOM05D001726 ORTHO05D001761 7.4e-06 56.2 154 29.9
Gohir.A08G244300 Gossypium hirsutum HOM05D001726 ORTHO05D001761 7.4e-06 56.2 141 30.5
Nitab4.5_0000012g0320 Nicotiana tabacum HOM05D001726 ORTHO05D001761 7.4e-06 56.2 141 28.4
Nitab4.5_0001946g0020 Nicotiana tabacum HOM05D001726 ORTHO05D001761 7.4e-06 56.2 141 28.4
Sc18g0001810 Simmondsia chinensis HOM05D001726 ORTHO05D001761 7.4e-06 56.2 141 29.1
Solyc05g026050.4 Solanum lycopersicum HOM05D001726 ORTHO05D001761 7.4e-06 56.2 141 28.4
Sopen05g022290 Solanum pennellii HOM05D001726 ORTHO05D001761 7.4e-06 56.2 141 28.4
PGSC0003DMG400028944 Solanum tuberosum HOM05D001726 ORTHO05D001761 7.4e-06 56.2 141 28.4
TWI63G1284 Tripterygium wilfordii HOM05D001726 ORTHO05D001761 7.4e-06 56.2 141 29.1
MSTRG.11676 Avicennia marina HOM05D001726 ORTHO05D001761 9.7e-06 55.8 175 26.9
EL10Ac4g08709 Beta vulgaris HOM05D001726 ORTHO05D001761 9.7e-06 55.8 156 28.8
A03p58750 Brassica napus HOM05D001726 ORTHO05D001761 9.7e-06 55.8 167 27.5
BolC1t00992H Brassica oleracea HOM05D001726 ORTHO05D001761 9.7e-06 55.8 141 29.1
BraA03t14938Z Brassica rapa HOM05D001726 ORTHO05D001761 9.7e-06 55.8 167 27.5
Cpa.g.sc229.3 Carica papaya HOM05D001726 ORTHO05D001761 9.7e-06 55.8 141 29.1
CiPaw.15G042900 Carya illinoinensis HOM05D001726 ORTHO05D001761 9.7e-06 55.8 173 27.2
Dinv27953 Davidia involucrata HOM05D001726 ORTHO05D001761 9.7e-06 55.8 141 28.4
Eucgr.C00934 Eucalyptus grandis HOM05D001726 ORTHO05D001761 9.7e-06 55.8 141 28.4
Gohir.A07G009700 Gossypium hirsutum HOM05D001726 ORTHO05D001761 9.7e-06 55.8 141 29.8
Medtr6g090515 Medicago truncatula HOM05D001726 ORTHO05D001761 9.7e-06 55.8 141 29.1
Peaxi162Scf00354g00067 Petunia axillaris HOM05D001726 ORTHO05D001761 9.7e-06 55.8 141 28.4
PGR042G3109 Punica granatum HOM05D001726 ORTHO05D001761 9.7e-06 55.8 141 28.4
TAR636G2067 Trochodendron aralioides HOM05D001726 ORTHO05D001761 9.7e-06 55.8 179 28.5


User provided reference genes

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