Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003086g0060 Nicotiana tabacum HOM05D005171 ORTHO05D006343 0.0e+00 2442.2 1284 100.0
Nitab4.5_0004941g0030 Nicotiana tabacum HOM05D005171 ORTHO05D006343 0.0e+00 1935.6 1324 81.1
Solyc07g045170.3 Solanum lycopersicum HOM05D005171 ORTHO05D006343 0.0e+00 1673.3 1353 70.1
Sopen07g023720 Solanum pennellii HOM05D005171 ORTHO05D006343 0.0e+00 1670.6 1384 69.4
Peaxi162Scf00359g00324 Petunia axillaris HOM05D005171 ORTHO05D006343 0.0e+00 1507.7 1337 65.1
Oeu056856.1 Olea europaea HOM05D005171 ORTHO05D006343 3.8e-156 557.0 1397 35.9
Actinidia20619 Actinidia chinensis HOM05D005171 ORTHO05D006343 8.2e-151 539.3 1380 33.9
Actinidia20605 Actinidia chinensis HOM05D005171 ORTHO05D006343 1.0e-148 532.3 1374 34.1
Rhsim06G0179100 Rhododendron simsii HOM05D005171 ORTHO05D006343 8.3e-135 486.1 1334 32.5
Cc05_g01980 Coffea canephora HOM05D005171 ORTHO05D006343 7.0e-134 483.0 1361 35.0
Migut.M00063 Erythranthe guttata HOM05D005171 ORTHO05D006343 3.5e-125 454.1 1375 32.0
Duzib138G0034 Durio zibethinus HOM05D005171 ORTHO05D006343 5.9e-125 453.4 1425 32.4
SGA_v2.0_scaffold181G39698 Striga asiatica HOM05D005171 ORTHO05D006343 9.5e-123 446.0 1374 31.5
vmacro12061 Vaccinium macrocarpon HOM05D005171 ORTHO05D000013 1.2e-122 445.7 1496 30.3
Thecc.01G199700 Theobroma cacao HOM05D005171 ORTHO05D006343 2.2e-119 434.9 1429 32.3
Atru.chr6.3433 Acer truncatum HOM05D005171 ORTHO05D006343 4.1e-118 430.6 1456 31.0
Manes.12G067100 Manihot esculenta HOM05D005171 ORTHO05D006343 1.7e-116 425.2 1447 30.8
QL04p066976 Quercus lobata HOM05D005171 ORTHO05D006343 2.8e-114 417.9 1435 30.1
Gorai.007G164500 Gossypium raimondii HOM05D005171 ORTHO05D006343 1.9e-110 405.2 1420 30.9
CSS0020778 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 2.7e-109 401.4 1326 30.1
CSS0016995 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 5.0e-108 397.1 1326 29.8
Potri.001G315950 Populus trichocarpa HOM05D005171 ORTHO05D006343 1.8e-105 388.7 1434 29.4
DCAR_012742 Daucus carota HOM05D005171 ORTHO05D006343 8.9e-105 386.3 1348 31.6
Dinv05326 Davidia involucrata HOM05D005171 ORTHO05D006343 1.7e-103 382.1 913 34.1
COL.COLO4_19656 Corchorus olitorius HOM05D005171 ORTHO05D006343 7.1e-102 376.7 1378 29.0
GSVIVG01030128001 Vitis vinifera HOM05D005171 ORTHO05D006343 1.2e-101 375.9 1230 30.1
TWI36G0325 Tripterygium wilfordii HOM05D005171 ORTHO05D006343 2.7e-101 374.8 1418 29.4
Nn1g07734 Nelumbo nucifera HOM05D005171 ORTHO05D006343 8.6e-100 369.8 1418 30.0
Haze_12584 Corylus avellana HOM05D005171 ORTHO05D006343 3.3e-99 367.9 1481 29.0
Sabra16G0199800 Salix brachista HOM05D005171 ORTHO05D006343 2.8e-98 364.8 1469 27.5
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 4.7e-98 364.0 1420 29.9
ClCG02G003060 Citrullus lanatus HOM05D005171 ORTHO05D006343 3.1e-97 361.3 1377 29.0
Prupe.3G194100 Prunus persica HOM05D005171 ORTHO05D006343 1.3e-95 355.9 1440 28.1
SalBow7G0294 Salvia bowleyana HOM05D005171 ORTHO05D006343 1.7e-95 355.5 1200 29.7
MD17G1119600 Malus domestica HOM05D005171 ORTHO05D006343 2.1e-93 348.6 1413 27.9
PGR083G1863 Punica granatum HOM05D005171 ORTHO05D006343 2.7e-93 348.2 1391 29.3
Sed0008164 Sechium edule HOM05D005171 ORTHO05D006343 2.3e-92 345.1 1399 28.2
CANSAT64G2466 Cannabis sativa HOM05D005171 ORTHO05D006343 7.3e-91 340.1 1392 27.7
Lj1C801G5 Lonicera japonica HOM05D005171 ORTHO05D006343 7.3e-91 340.1 1385 28.7
EL10Ac2g03228 Beta vulgaris HOM05D005171 ORTHO05D006343 1.6e-90 339.0 1391 27.9
Ciclev10014049m.g Citrus clementina HOM05D005171 ORTHO05D006343 3.6e-90 337.8 1414 28.8
Hund13065 Selenicereus undatus HOM05D005171 ORTHO05D006343 6.2e-90 337.0 1416 27.9
Sed0010628 Sechium edule HOM05D005171 ORTHO05D006343 5.2e-89 334.0 1437 27.6
MD09G1131900 Malus domestica HOM05D005171 ORTHO05D006343 8.9e-89 333.2 1406 27.8
CsaV3_7G002340 Cucumis sativus L. HOM05D005171 ORTHO05D006343 1.1e-86 326.2 1426 27.7
HanXRQChr13g0389891 Helianthus annuus HOM05D005171 ORTHO05D006343 7.1e-86 323.6 1338 27.7
FvH4_6g40370 Fragaria vesca HOM05D005171 ORTHO05D006343 7.8e-85 320.1 1369 28.1
FAN02G4474 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.5e-83 315.1 1368 28.4
FAN09G0598 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.1e-82 312.0 1380 28.6
FAN14G5634 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.1e-82 312.0 1376 28.6
RcHm_v2.0_Chr2g0155571 Rosa chinensis HOM05D005171 ORTHO05D006343 2.8e-82 311.6 1360 28.9
FAN05G5461 Fragaria x ananassa HOM05D005171 ORTHO05D006343 3.6e-82 311.2 1377 28.2
Gohir.D11G154400 Gossypium hirsutum HOM05D005171 ORTHO05D006343 8.1e-82 310.1 1274 28.5
Sc20g0003130 Simmondsia chinensis HOM05D005171 ORTHO05D006343 1.5e-80 305.8 1396 27.4
Ah.10g032550 Amaranthus hybridus HOM05D005171 ORTHO05D006343 3.4e-80 304.7 1332 27.8
MELO3C024178.2 Cucumis melo HOM05D005171 ORTHO05D006343 2.3e-76 292.0 1332 28.0
AUR62018228 Chenopodium quinoa HOM05D005171 ORTHO05D006343 2.1e-74 285.4 1429 26.1
Lalb_Chr10g0094191 Lupinus albus HOM05D005171 ORTHO05D006343 1.4e-73 282.7 1356 27.5
Ca_16333_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 2.0e-72 278.9 1340 27.8
Ca_30417_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 2.0e-72 278.9 1340 27.8
Aa31sc733G10 Aethionema arabicum HOM05D005171 ORTHO05D006343 4.5e-72 277.7 1356 27.1
A07p06800 Brassica napus HOM05D005171 ORTHO05D006343 1.3e-71 276.2 1344 26.6
BcaB06g26770 Brassica carinata HOM05D005171 ORTHO05D006343 3.8e-71 274.6 1343 26.1
AUR62037747 Chenopodium quinoa HOM05D005171 ORTHO05D006343 3.8e-71 274.6 1440 25.6
Lj6g0011858 Lotus japonicus HOM05D005171 ORTHO05D006343 6.4e-71 273.9 1365 27.5
Thhalv10002382m.g Eutrema salsugineum HOM05D005171 ORTHO05D006343 8.4e-71 273.5 1340 26.3
BcaC06g35856 Brassica carinata HOM05D005171 ORTHO05D006343 4.2e-70 271.2 1342 26.6
BolC7t41487H Brassica oleracea HOM05D005171 ORTHO05D006343 4.2e-70 271.2 1342 26.6
MBI14_g37363_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 4.2e-70 271.2 1403 27.4
Sp3g23130 Schrenkiella parvula HOM05D005171 ORTHO05D006343 5.5e-70 270.8 1351 26.6
HanXRQChr09g0257391 Helianthus annuus HOM05D005171 ORTHO05D006343 2.1e-69 268.9 1333 26.3
THA.LOC104815372 Tarenaya hassleriana HOM05D005171 ORTHO05D006343 2.7e-69 268.5 1407 27.2
C07p10370 Brassica napus HOM05D005171 ORTHO05D006343 6.0e-69 267.3 1343 26.4
BraA07t28471Z Brassica rapa HOM05D005171 ORTHO05D006343 1.8e-68 265.8 1340 26.3
AL3G41930 Arabidopsis lyrata HOM05D005171 ORTHO05D006343 1.2e-64 253.1 1357 25.4
Psat5g105360 Pisum sativum HOM05D005171 ORTHO05D006343 4.9e-63 247.7 1536 26.9
Lsat_1_v5_gn_7_97220 Lactuca sativa HOM05D005171 ORTHO05D006343 1.0e-60 240.0 1258 26.3
TAR627G0484 Trochodendron aralioides HOM05D005171 ORTHO05D006343 1.1e-59 236.5 352 43.2
AT2G04235 Arabidopsis thaliana HOM05D005171 ORTHO05D006343 1.6e-58 232.6 1384 24.3
PSO541G4744 Papaver somniferum HOM05D005171 ORTHO05D006343 1.4e-57 229.6 1589 25.7
Cpa.g.sc136.57 Carica papaya HOM05D005171 ORTHO05D006343 1.8e-57 229.2 1233 26.8
unitig_37.g12589 Utricularia gibba HOM05D005171 ORTHO05D006343 6.9e-57 227.3 1364 24.9
TAR627G0657 Trochodendron aralioides HOM05D005171 ORTHO05D006343 1.7e-55 222.6 776 32.7
Gorai.004G060900 Gossypium raimondii HOM05D005171 ORTHO05D006343 2.2e-55 222.2 670 30.3
Glyma.13G008500 Glycine max HOM05D005171 ORTHO05D006343 1.9e-54 219.2 1312 25.1
Gohir.D08G059000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.5e-54 218.8 706 31.2
Carub.0003s2593 Capsella rubella HOM05D005171 ORTHO05D006343 3.3e-51 208.4 1425 23.8
PGSC0003DMG400017412 Solanum tuberosum HOM05D005171 ORTHO05D006343 8.2e-50 203.8 124 83.9
CDE01G0402 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 9.1e-49 200.3 1357 25.1
arahy.Tifrunner.gnm1.ann1.U10BM9 Arachis hypogaea HOM05D005171 ORTHO05D006343 2.6e-48 198.7 1329 25.8
Glyma.20G060900 Glycine max HOM05D005171 ORTHO05D006343 9.4e-46 190.3 399 35.1
ECA240G4228 Erigeron canadensis HOM05D005171 ORTHO05D006343 2.7e-45 188.7 402 31.3
VMungo0540G0527 Vigna mungo HOM05D005171 ORTHO05D006343 2.7e-45 188.7 1356 25.9
Eucgr.A01375 Eucalyptus grandis HOM05D005171 ORTHO05D006343 3.6e-45 188.3 489 29.4
Gohir.A11G147500 Gossypium hirsutum HOM05D005171 ORTHO05D006343 3.6e-45 188.3 1166 26.8
Lsat_1_v5_gn_9_102901 Lactuca sativa HOM05D005171 ORTHO05D006343 2.0e-43 182.6 390 31.8
Phvul.006G005000 Phaseolus vulgaris HOM05D005171 ORTHO05D006343 4.1e-41 174.9 1327 24.1
MBI14_g33664_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 9.1e-41 173.7 273 40.7
HPP92_000125 Vanilla planifolia HOM05D005171 ORTHO05D006343 2.0e-40 172.6 1287 24.0
ATR0751G269 Amborella trichopoda HOM05D005171 ORTHO05D006343 2.6e-40 172.2 1574 23.4
Aqoxy1G04295 Aquilegia oxysepala HOM05D005171 ORTHO05D006343 1.1e-38 166.8 467 30.2
CiPaw.03G284100 Carya illinoinensis HOM05D005171 ORTHO05D006343 2.5e-38 165.6 499 28.9
VMungo0331G1557 Vigna mungo HOM05D005171 ORTHO05D006343 1.2e-37 163.3 270 38.9
arahy.Tifrunner.gnm1.ann1.DEY0FQ Arachis hypogaea HOM05D005171 ORTHO05D006343 7.9e-37 160.6 268 38.8
Hma1.2p1_0629F.1_g192120 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 7.9e-37 160.6 354 40.7
arahy.Tifrunner.gnm1.ann1.DUBF95 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.8e-36 159.5 427 31.6
PSO017G5154 Papaver somniferum HOM05D005171 ORTHO05D006343 1.7e-34 152.9 1360 24.4
PSO478G2888 Papaver somniferum HOM05D005171 ORTHO05D006343 3.1e-33 148.7 224 40.6
arahy.Tifrunner.gnm1.ann1.CJRH42 Arachis hypogaea HOM05D005171 ORTHO05D006343 3.5e-32 145.2 495 27.7
TPR.G27424 Trifolium pratense HOM05D005171 ORTHO05D006343 1.3e-31 143.3 261 45.2
Dinv21324 Davidia involucrata HOM05D005171 ORTHO05D006343 3.2e-30 138.7 152 48.0
Zm00001eb386590 Zea mays HOM05D005171 ORTHO05D006343 4.2e-30 138.3 1275 22.6
arahy.Tifrunner.gnm1.ann1.AZD9M5 Arachis hypogaea HOM05D005171 ORTHO05D006343 3.7e-26 125.2 290 35.5
Hma1.2p1_0629F.1_g192130 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 5.3e-25 121.3 261 33.7
PSO675G6191 Papaver somniferum HOM05D005171 ORTHO05D006343 1.2e-21 110.2 130 46.9
Os06g0608100 Oryza sativa ssp. japonica HOM05D005171 ORTHO05D006343 3.6e-21 108.6 382 28.5
Duzib211G0583 Durio zibethinus HOM05D005171 ORTHO05D006343 2.3e-20 105.9 145 44.1
Gohir.A08G049000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 9.8e-19 100.5 565 26.9
Glyma.20G061000 Glycine max HOM05D005171 ORTHO05D006343 4.8e-18 98.2 287 35.2
CANSAT11G0838 Cannabis sativa HOM05D005171 ORTHO05D006343 7.7e-16 90.9 92 52.2
Actinidia12355 Actinidia chinensis HOM05D005171 ORTHO05D006343 1.0e-15 90.5 472 27.8
Oeu036991.1 Olea europaea HOM05D005171 ORTHO05D006343 5.0e-15 88.2 127 52.0
PSO478G0307 Papaver somniferum HOM05D005171 ORTHO05D006343 5.0e-15 88.2 418 29.4
SEGI_14020 Sequoiadendron giganteum HOM05D005171 ORTHO05D026698 1.6e-13 83.2 285 31.6
SEGI_15711 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 8.3e-10 70.9 118 36.4
Gohir.A11G147450 Gossypium hirsutum HOM05D005171 ORTHO05D006343 2.4e-09 69.3 120 45.8
TPR.G30970 Trifolium pratense HOM05D005171 ORTHO05D006343 5.4e-09 68.2 150 32.0
Actinidia12354 Actinidia chinensis HOM05D005171 ORTHO05D006343 2.0e-08 66.2 59 57.6
Cpa.g.c43179 Carica papaya HOM05D005171 ORTHO05D006343 4.5e-08 65.1 122 42.6
Cpa.g.sc136.58 Carica papaya HOM05D005171 ORTHO05D006343 4.5e-08 65.1 122 42.6
SalBow7G0566 Salvia bowleyana HOM05D005171 ORTHO05D006343 1.3e-07 63.5 104 45.2
SEGI_11604 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 1.3e-07 63.5 102 34.3
ECA240G0272 Erigeron canadensis HOM05D004103 ORTHO05D005242 2.3e-07 62.8 143 36.4
MD09G1132400 Malus domestica HOM05D005171 ORTHO05D006343 1.1e-06 60.5 65 52.3
Gohir.D11G154350 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.5e-06 60.1 120 44.2


User provided reference genes

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