Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003080g0090 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 3744.5 1873 100.0
Nitab4.5_0003503g0010 Nicotiana tabacum HOM05D005412 ORTHO05D006096 0.0e+00 3486.0 1907 92.9
Sopen01g050390 Solanum pennellii HOM05D005412 ORTHO05D006096 0.0e+00 3040.0 1906 82.0
Peaxi162Scf00016g01825 Petunia axillaris HOM05D005412 ORTHO05D006096 0.0e+00 3035.7 1910 81.6
Solyc01g108160.3 Solanum lycopersicum HOM05D005412 ORTHO05D006096 0.0e+00 3030.7 1906 81.8
CAN.G1041.23 Capsicum annuum HOM05D005412 ORTHO05D006096 0.0e+00 3015.3 1911 81.2
Dinv42150 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1978.0 1938 56.2
Dinv23615 Davidia involucrata HOM05D005412 ORTHO05D006096 0.0e+00 1947.2 1945 55.3
CSS0011349 Camellia sinensis var. sinensis HOM05D005412 ORTHO05D006096 0.0e+00 1862.8 1941 54.0
Rhsim11G0166400 Rhododendron simsii HOM05D005412 ORTHO05D006096 0.0e+00 1743.4 1964 50.5
GSVIVG01031759001 Vitis vinifera HOM05D005412 ORTHO05D006096 0.0e+00 1708.7 1932 49.6
Cc02_g18700 Coffea canephora HOM05D005412 ORTHO05D006096 0.0e+00 1707.6 1951 49.8
TAR628G0752 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1704.1 1966 49.6
vmacro02202 Vaccinium macrocarpon HOM05D005412 ORTHO05D006096 0.0e+00 1696.8 1942 49.5
Haze_01830 Corylus avellana HOM05D005412 ORTHO05D006096 0.0e+00 1679.8 1966 48.9
TAR376G0189 Trochodendron aralioides HOM05D005412 ORTHO05D006096 0.0e+00 1671.8 1965 48.7
Prupe.8G123400 Prunus persica HOM05D005412 ORTHO05D006096 0.0e+00 1667.5 1945 49.5
Migut.B00339 Erythranthe guttata HOM05D005412 ORTHO05D006096 0.0e+00 1653.6 1935 50.0
Thecc.02G099500 Theobroma cacao HOM05D005412 ORTHO05D006096 0.0e+00 1647.1 1936 49.4
COL.COLO4_32667 Corchorus olitorius HOM05D005412 ORTHO05D006096 0.0e+00 1633.2 1935 48.8
Manes.10G065500 Manihot esculenta HOM05D005412 ORTHO05D006096 0.0e+00 1626.3 1953 47.5
DCAR_022030 Daucus carota HOM05D005412 ORTHO05D006096 0.0e+00 1618.2 1914 48.2
Duzib052G1101 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1617.1 1926 48.7
Potri.009G102900 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1609.0 1944 47.1
RcHm_v2.0_Chr6g0256971 Rosa chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1608.6 1942 48.1
QL11p036050 Quercus lobata HOM05D005412 ORTHO05D006096 0.0e+00 1605.9 1943 48.3
CiPaw.05G051900 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1602.8 1938 47.7
Ciclev10027665m.g Citrus clementina HOM05D005412 ORTHO05D006096 0.0e+00 1602.0 1948 48.0
MD05G1079500 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1598.6 1944 48.0
FAN24G2004 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1582.0 1963 47.5
Duzib248G0232 Durio zibethinus HOM05D005412 ORTHO05D006096 0.0e+00 1581.6 1937 48.0
Gorai.005G238500 Gossypium raimondii HOM05D005412 ORTHO05D006096 0.0e+00 1573.9 1966 46.9
Potri.004G141700 Populus trichocarpa HOM05D005412 ORTHO05D006096 0.0e+00 1573.9 1952 46.8
FAN15G2385 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1571.2 1970 47.3
MD10G1093800 Malus domestica HOM05D005412 ORTHO05D006096 0.0e+00 1564.7 1945 47.5
Sabra09G0078800 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1564.7 1947 46.5
TWI79G0096 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1553.5 1957 46.2
Nn5g30243 Nelumbo nucifera HOM05D005412 ORTHO05D006096 0.0e+00 1544.6 1968 47.0
CiPaw.06G143300 Carya illinoinensis HOM05D005412 ORTHO05D006096 0.0e+00 1538.1 1943 46.0
Lj9C358T17 Lonicera japonica HOM05D005412 ORTHO05D006096 0.0e+00 1530.4 1930 48.3
Lalb_Chr09g0328271 Lupinus albus HOM05D005412 ORTHO05D006096 0.0e+00 1516.5 1947 46.6
Glyma.07G211600 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1514.2 1951 45.7
FAN27G2299 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1513.8 1962 46.6
TWI75G0165 Tripterygium wilfordii HOM05D005412 ORTHO05D006096 0.0e+00 1501.1 1951 45.1
Glyma.02G133400 Glycine max HOM05D005412 ORTHO05D006096 0.0e+00 1500.3 1950 45.5
PSO210G3961 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1477.2 1953 45.0
Eucgr.I01159 Eucalyptus grandis HOM05D005412 ORTHO05D006096 0.0e+00 1474.1 1954 44.5
Sc14g0001650 Simmondsia chinensis HOM05D005412 ORTHO05D006096 0.0e+00 1472.6 1925 45.3
Ca_18676_v3 Cicer arietinum L. HOM05D005412 ORTHO05D006096 0.0e+00 1472.2 1956 44.7
PSO170G0229 Papaver somniferum HOM05D005412 ORTHO05D006096 0.0e+00 1469.1 1951 44.7
Medtr4g086370 Medicago truncatula HOM05D005412 ORTHO05D006096 0.0e+00 1463.4 1948 44.5
SGA_v2.0_scaffold90G27665 Striga asiatica HOM05D005412 ORTHO05D006096 0.0e+00 1459.5 1910 46.2
arahy.Tifrunner.gnm1.ann1.Q5Y61J Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1451.0 1925 45.1
Sabra04G0093700 Salix brachista HOM05D005412 ORTHO05D006096 0.0e+00 1449.9 1951 44.9
MELO3C019513.2 Cucumis melo HOM05D005412 ORTHO05D006096 0.0e+00 1442.2 1929 44.8
Lj4g0027932 Lotus japonicus HOM05D005412 ORTHO05D006096 0.0e+00 1439.5 1941 44.9
ClCG05G010030 Citrullus lanatus HOM05D005412 ORTHO05D006096 0.0e+00 1434.9 1957 44.0
arahy.Tifrunner.gnm1.ann1.4LZP30 Arachis hypogaea HOM05D005412 ORTHO05D006096 0.0e+00 1432.9 1967 44.3
Psat7g124160 Pisum sativum HOM05D005412 ORTHO05D006096 0.0e+00 1432.9 1953 44.3
VMungo0251G1021 Vigna mungo HOM05D005412 ORTHO05D006096 0.0e+00 1426.0 1954 43.8
Sed0007905 Sechium edule HOM05D005412 ORTHO05D006096 0.0e+00 1412.1 1936 43.9
Phvul.003G295800 Phaseolus vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1408.7 1951 43.7
Lsat_1_v5_gn_9_110121 Lactuca sativa HOM05D005412 ORTHO05D006096 0.0e+00 1392.5 1895 45.4
MBI02_g17325_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 0.0e+00 1391.7 2001 43.8
AUR62011444 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1390.2 1974 43.7
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 0.0e+00 1372.5 1888 45.7
HanXRQChr03g0072341 Helianthus annuus HOM05D005412 ORTHO05D006096 0.0e+00 1367.1 1920 44.0
CsaV3_3G018540 Cucumis sativus L. HOM05D005412 ORTHO05D006096 0.0e+00 1360.1 1853 43.9
Aqoxy5G01253 Aquilegia oxysepala HOM05D005412 ORTHO05D006096 0.0e+00 1355.1 1974 42.7
Hund00331 Selenicereus undatus HOM05D005412 ORTHO05D006096 0.0e+00 1354.3 1955 41.9
THA.LOC104800351 Tarenaya hassleriana HOM05D005412 ORTHO05D006096 0.0e+00 1345.5 1925 43.3
EL10Ac9g21835 Beta vulgaris HOM05D005412 ORTHO05D006096 0.0e+00 1330.5 2019 41.4
Ah.02g117120 Amaranthus hybridus HOM05D005412 ORTHO05D006096 0.0e+00 1313.5 1955 41.7
FvH4_2g06220 Fragaria vesca HOM05D005412 ORTHO05D006096 0.0e+00 1307.7 1704 45.8
FAN20G2783 Fragaria x ananassa HOM05D005412 ORTHO05D006096 0.0e+00 1301.6 1724 45.6
AT3G19190 Arabidopsis thaliana HOM05D005412 ORTHO05D006096 0.0e+00 1287.7 1916 42.2
Thhalv10019879m.g Eutrema salsugineum HOM05D005412 ORTHO05D006096 0.0e+00 1286.9 1921 42.3
AL3G32570 Arabidopsis lyrata HOM05D005412 ORTHO05D006096 0.0e+00 1281.5 1916 42.0
Aa31LG8G5990 Aethionema arabicum HOM05D005412 ORTHO05D006096 0.0e+00 1275.8 1921 41.4
Sp3g17260 Schrenkiella parvula HOM05D005412 ORTHO05D006096 0.0e+00 1274.6 1930 42.1
Carub.0003s1902 Capsella rubella HOM05D005412 ORTHO05D006096 0.0e+00 1273.8 1916 42.0
BcaB06g25975 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1272.7 1928 42.4
CARHR094600 Cardamine hirsuta HOM05D005412 ORTHO05D006096 0.0e+00 1261.1 1921 41.2
A05p30450 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1256.9 1934 41.9
C05p46050 Brassica napus HOM05D005412 ORTHO05D006096 0.0e+00 1253.0 1934 41.7
BolC5t33332H Brassica oleracea HOM05D005412 ORTHO05D006096 0.0e+00 1251.9 1934 41.7
BcaNung06981 Brassica carinata HOM05D005412 ORTHO05D006096 0.0e+00 1251.5 1934 41.7
BraA05t21884Z Brassica rapa HOM05D005412 ORTHO05D006096 0.0e+00 1245.3 1932 41.7
Oeu025571.1 Olea europaea HOM05D005412 ORTHO05D006096 0.0e+00 1220.3 1704 43.8
TPR.G30829 Trifolium pratense HOM05D005412 ORTHO05D006096 0.0e+00 1158.3 1757 40.9
AUR62016618 Chenopodium quinoa HOM05D005412 ORTHO05D006096 0.0e+00 1136.3 1690 42.2
Gohir.D02G210500 Gossypium hirsutum HOM05D005412 ORTHO05D006096 0.0e+00 1084.7 1386 46.3
ATR0100G063 Amborella trichopoda HOM05D005412 ORTHO05D006096 0.0e+00 1084.3 2015 37.1
Gohir.A03G189900 Gossypium hirsutum HOM05D005412 ORTHO05D006096 3.8e-306 1055.8 1386 45.5
Atru.chr5.2730 Acer truncatum HOM05D005412 ORTHO05D006096 1.6e-272 944.1 1225 44.7
Cpa.g.sc62.21 Carica papaya HOM05D005412 ORTHO05D006096 4.0e-271 939.5 1950 33.9
Zm00001eb280540 Zea mays HOM05D005412 ORTHO05D006096 3.1e-263 913.3 1963 33.3
SEGI_28745 Sequoiadendron giganteum HOM05D005412 ORTHO05D006096 1.3e-242 844.7 2052 31.7
CDE09G1352 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 3.4e-238 830.1 1685 33.8
Mapoly0038s0067 Marchantia polymorpha HOM05D005412 ORTHO05D006096 9.1e-191 672.5 2108 28.7
Zm00001eb380180 Zea mays HOM05D005412 ORTHO05D006096 7.7e-190 669.5 1411 33.7
unitig_21.g20750 Utricularia gibba HOM05D005412 ORTHO05D006096 6.7e-186 656.4 1882 30.1
AagrBONN_evm.TU.Sc2ySwM_369.474 Anthoceros agrestis HOM05D005412 ORTHO05D006096 3.0e-162 577.8 2069 27.4
Pp3c13_15610 Physcomitrium patens HOM05D005412 ORTHO05D006096 2.4e-135 488.4 1912 25.7
Actinidia12957 Actinidia chinensis HOM05D005412 ORTHO05D006096 7.3e-132 476.9 1138 32.3
HPP92_028321 Vanilla planifolia HOM05D005412 ORTHO05D006096 1.5e-129 469.2 1642 27.5
Atru.chr5.2729 Acer truncatum HOM05D005412 ORTHO05D006096 6.6e-125 453.8 590 45.6
SHI05373 Sapria himalayana HOM05D005412 ORTHO05D006096 1.1e-119 436.4 1240 29.1
Actinidia00447 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.3e-115 422.9 444 52.7
Actinidia12956 Actinidia chinensis HOM05D005412 ORTHO05D006096 3.2e-103 381.7 326 63.5
Oeu025573.1 Olea europaea HOM05D005412 ORTHO05D006096 1.1e-84 320.1 186 82.8
CDE09G1277 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 4.3e-84 318.2 309 53.4
FvH4_2g06211 Fragaria vesca HOM05D005412 ORTHO05D006096 1.4e-79 303.1 186 78.5
Oeu003689.1 Olea europaea HOM05D005412 ORTHO05D006096 3.7e-75 288.5 271 58.7
Os06g0267600 Oryza sativa ssp. japonica HOM05D005412 ORTHO05D006096 1.0e-72 280.4 298 50.0
AUR62016617 Chenopodium quinoa HOM05D005412 ORTHO05D006096 5.5e-71 274.6 187 70.6
TPR.G30995 Trifolium pratense HOM05D005412 ORTHO05D006096 7.2e-71 274.2 186 69.9
SHI05374 Sapria himalayana HOM05D005412 ORTHO05D006096 6.7e-69 267.7 515 35.9
HPP92_028322 Vanilla planifolia HOM05D005412 ORTHO05D006096 1.2e-60 240.4 227 57.7
Actinidia00446 Actinidia chinensis HOM05D005412 ORTHO05D006096 1.7e-51 209.9 123 79.7
Migut.B00336 Erythranthe guttata HOM05D005412 ORTHO05D006096 4.9e-43 181.8 334 38.6
SMO196G0062 Selaginella moellendorffii HOM05D005412 ORTHO05D006096 1.7e-40 173.3 197 47.2
MBI18_g07589_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D006096 4.7e-38 165.2 143 55.9
MBI11_g39905_MAGBIO Magnolia biondii HOM05D005412 ORTHO05D006096 1.1e-31 144.1 110 60.9
Hma1.2p1_0028F.1_g017490 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 4.3e-31 142.1 83 79.5
CBR_g37898 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-30 139.8 585 24.4
Migut.B00338 Erythranthe guttata HOM05D005412 ORTHO05D006096 9.8e-28 131.0 275 32.4
Dinv23623 Davidia involucrata HOM05D005412 ORTHO05D006096 7.8e-25 121.3 67 85.1
Dinv23614 Davidia involucrata HOM05D005412 ORTHO05D006096 1.7e-24 120.2 67 83.6
MCO03G368 Micromonas commoda HOM05D005412 ORTHO05D006096 3.0e-24 119.4 276 31.2
PGSC0003DMG400025793 Solanum tuberosum HOM05D005412 ORTHO05D006096 1.9e-23 116.7 66 87.9
Dinv23622 Davidia involucrata HOM05D005412 ORTHO05D006096 4.7e-22 112.1 64 84.4
Cre09.g408950 Chlamydomonas reinhardtii HOM05D005412 ORTHO05D006096 1.4e-21 110.5 221 34.4
CDE02G1280 Ceratophyllum demersum HOM05D005412 ORTHO05D006096 2.9e-19 102.8 68 70.6
Rhsim11G0175200 Rhododendron simsii HOM05D063897 ORTHO05D006096 6.4e-19 101.7 101 53.5
CsaV3_3G018530 Cucumis sativus L. HOM05D005412 ORTHO05D006096 1.1e-18 100.9 62 71.0
CBR_g37914 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-16 94.0 112 42.0
PRCOL_00003309 Prasinoderma coloniale HOM05D005412 ORTHO05D006096 1.7e-16 93.6 394 23.6
BcaNung06609 Brassica carinata HOM05D005412 ORTHO05D006096 1.1e-15 90.9 56 80.4
Hma1.2p1_0027F.1_g017200 Hydrangea macrophylla HOM05D005412 ORTHO05D006096 5.2e-13 82.0 55 74.5
SHI05371 Sapria himalayana HOM05D005412 ORTHO05D006096 1.7e-08 67.0 66 56.1
SHI05372 Sapria himalayana HOM05D005412 ORTHO05D006096 1.1e-07 64.3 46 63.0


User provided reference genes

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