Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 2.2e-214 748.8 422 100.0
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 8.0e-196 687.2 417 94.7
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 1.5e-178 629.8 418 84.2
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 8.3e-177 624.0 420 81.9
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 3.5e-167 592.0 414 81.9
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 1.6e-164 583.2 427 80.6
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 2.2e-161 572.8 407 78.6
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 3.4e-146 522.3 422 69.4
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 1.4e-144 516.9 424 68.6
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 2.8e-140 502.7 423 66.7
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 1.2e-138 497.3 422 66.6
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 2.1e-135 486.5 431 66.4
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 2.1e-135 486.5 425 67.5
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 6.3e-132 474.9 436 61.7
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 5.3e-131 471.9 421 67.0
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 1.5e-130 470.3 406 67.0
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 3.4e-130 469.2 444 63.1
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 4.5e-130 468.8 431 63.6
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 2.5e-128 463.0 425 61.6
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 5.5e-128 461.8 423 64.5
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 3.6e-127 459.1 443 61.9
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 6.1e-127 458.4 427 62.5
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 1.8e-126 456.8 426 62.4
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 8.8e-126 454.5 423 63.1
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 2.5e-125 453.0 411 65.9
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 5.7e-125 451.8 422 62.3
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 5.7e-125 451.8 497 57.3
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 3.7e-124 449.1 411 63.0
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 3.7e-124 449.1 431 62.6
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 8.2e-124 448.0 423 66.7
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 1.8e-123 446.8 423 66.4
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.1e-123 446.0 425 61.4
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 4.1e-123 445.7 425 62.6
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 6.9e-123 444.9 425 61.6
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 6.9e-123 444.9 422 61.4
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 6.9e-123 444.9 426 61.3
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 1.5e-122 443.7 425 61.4
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.5e-122 443.7 425 61.4
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 2.0e-122 443.4 419 60.9
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 7.7e-122 441.4 432 62.3
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 7.7e-122 441.4 426 60.6
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 3.8e-121 439.1 422 62.6
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 3.8e-121 439.1 428 64.5
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 6.5e-121 438.3 425 60.9
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 1.1e-120 437.6 422 62.3
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 1.4e-120 437.2 408 63.5
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 5.5e-120 435.3 430 60.5
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 7.2e-120 434.9 416 61.1
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 1.6e-119 433.7 417 62.4
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 6.1e-119 431.8 417 60.7
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 5.1e-118 428.7 431 63.8
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 1.3e-116 424.1 416 60.6
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 3.7e-116 422.5 411 60.3
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 2.6e-114 416.4 398 61.1
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 5.9e-114 415.2 418 60.3
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 2.9e-113 412.9 446 56.1
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 3.8e-113 412.5 420 60.7
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 4.2e-112 409.1 417 60.9
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 9.4e-112 407.9 417 60.0
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 3.0e-110 402.9 424 58.7
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 3.0e-110 402.9 469 53.5
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 3.9e-110 402.5 419 57.5
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 3.9e-110 402.5 419 58.0
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 4.8e-108 395.6 431 57.5
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 6.3e-108 395.2 425 56.9
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 6.3e-108 395.2 422 58.3
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 3.1e-107 392.9 415 58.8
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 9.1e-107 391.3 371 60.1
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 2.9e-105 386.3 372 60.5
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 1.1e-104 384.4 422 58.1
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 1.9e-104 383.6 374 62.3
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 2.5e-104 383.3 411 56.7
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.6e-103 380.6 419 58.2
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.6e-103 380.6 421 54.2
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 2.1e-103 380.2 431 57.1
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 4.7e-103 379.0 424 57.8
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 1.0e-102 377.9 419 56.8
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 2.0e-101 373.6 295 69.2
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 2.0e-101 373.6 418 57.2
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 4.8e-100 369.0 438 52.3
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 6.3e-100 368.6 420 54.8
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.8e-99 367.1 400 57.5
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 7.0e-99 365.2 404 55.7
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 1.3e-97 360.9 423 54.6
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 2.9e-97 359.8 401 52.6
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 3.8e-97 359.4 409 58.4
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 8.5e-97 358.2 423 52.5
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 1.5e-96 357.5 420 54.5
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 5.5e-96 355.5 415 54.9
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 2.7e-95 353.2 408 54.9
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 1.8e-94 350.5 449 50.1
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 3.0e-94 349.7 402 54.0
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 1.5e-93 347.4 365 56.7
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 2.0e-93 347.1 401 53.4
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 1.7e-92 344.0 399 53.9
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.7e-92 344.0 400 54.8
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 2.2e-92 343.6 465 48.0
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 4.1e-91 339.3 423 52.0
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 4.5e-90 335.9 388 54.4
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 4.5e-90 335.9 388 54.4
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 1.0e-89 334.7 422 51.7
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 1.7e-89 334.0 365 59.7
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 5.5e-88 328.9 277 67.1
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 8.0e-87 325.1 396 57.3
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 3.4e-85 319.7 413 53.0
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 7.5e-85 318.5 351 53.0
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 5.6e-80 302.4 312 57.1
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 2.1e-79 300.4 397 49.9
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 6.1e-79 298.9 419 48.4
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 6.8e-78 295.4 262 64.5
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 9.5e-72 275.0 264 60.6
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 1.2e-71 274.6 302 56.6
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 8.0e-71 271.9 397 47.9
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 1.1e-70 271.6 323 50.5
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.5e-69 267.7 273 60.8
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 6.6e-65 252.3 423 47.3
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 1.8e-62 244.2 272 58.5
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 8.3e-60 235.3 262 58.8
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 7.1e-59 232.3 268 54.9
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 1.3e-57 228.0 269 54.6
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 2.5e-56 223.8 267 53.9
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 3.3e-56 223.4 186 63.4
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 6.2e-55 219.2 269 53.5
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 6.2e-55 219.2 437 39.8
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 8.1e-55 218.8 332 43.7
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 9.9e-53 211.8 180 67.2
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 2.2e-52 210.7 386 45.1
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 2.9e-52 210.3 315 46.7
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 9.2e-51 205.3 341 44.3
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 2.5e-48 197.2 247 49.4
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 4.3e-48 196.4 430 39.8
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 7.3e-48 195.7 268 48.9
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 1.8e-46 191.0 269 50.6
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 7.6e-45 185.7 195 59.0
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 9.3e-43 178.7 135 66.7
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 2.3e-41 174.1 134 65.7
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 9.6e-40 168.7 402 38.3
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 5.6e-32 142.9 129 64.3
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 4.5e-29 133.3 459 30.9
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 2.9e-28 130.6 141 53.9
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 8.4e-28 129.0 155 51.6
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 2.5e-27 127.5 158 50.0
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 3.0e-25 120.6 143 51.0
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 2.5e-16 90.9 174 38.5
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 1.3e-12 78.6 85 49.4
CAN.G165.26 Capsicum annuum HOM05D000541 ORTHO05D000137 3.2e-11 73.9 68 66.2
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 1.4e-09 68.6 204 33.3
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 1.3e-07 62.0 37 73.0
Zm00001eb244490 Zea mays HOM05D001326 ORTHO05D002471 5.3e-06 56.6 33 72.7


User provided reference genes

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