Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 7.8e-61 236.9 115 100.0
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 3.3e-51 204.9 105 94.3
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 3.3e-51 204.9 105 94.3
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 5.4e-46 187.6 92 96.7
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.1e-45 185.7 100 87.0
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 2.3e-44 182.2 100 86.0
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 3.9e-44 181.4 100 87.0
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 5.1e-44 181.0 100 87.0
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 1.6e-42 176.0 97 86.6
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 2.4e-41 172.2 100 83.0
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 4.5e-40 167.9 100 81.0
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 9.9e-40 166.8 97 82.5
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 2.2e-39 165.6 93 84.9
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 3.8e-39 164.9 98 78.6
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 3.8e-39 164.9 92 83.7
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 4.9e-39 164.5 92 83.7
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 6.4e-39 164.1 100 80.0
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 6.4e-39 164.1 98 77.6
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 8.4e-39 163.7 91 83.5
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 3.2e-38 161.8 90 84.4
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 4.2e-38 161.4 100 76.0
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 5.5e-38 161.0 100 80.0
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 7.1e-38 160.6 91 81.3
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 9.3e-38 160.2 101 78.2
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 9.3e-38 160.2 98 78.6
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 9.3e-38 160.2 93 79.6
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 1.6e-37 159.5 94 79.8
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 2.1e-37 159.1 91 81.3
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 2.1e-37 159.1 91 81.3
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.7e-37 158.7 99 75.8
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 2.7e-37 158.7 88 85.2
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 4.6e-37 157.9 99 75.8
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 4.6e-37 157.9 98 76.5
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 4.6e-37 157.9 81 90.1
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 6.0e-37 157.5 88 81.8
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 6.0e-37 157.5 88 81.8
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 7.9e-37 157.1 86 84.9
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 7.9e-37 157.1 93 79.6
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 1.0e-36 156.8 96 79.2
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 1.0e-36 156.8 93 79.6
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 1.3e-36 156.4 94 77.7
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 1.8e-36 156.0 100 76.0
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 1.8e-36 156.0 88 83.0
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 2.3e-36 155.6 88 80.7
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 2.3e-36 155.6 88 80.7
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 2.3e-36 155.6 93 77.4
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 2.3e-36 155.6 94 78.7
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 3.9e-36 154.8 93 77.4
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 5.1e-36 154.5 98 76.5
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 1.9e-35 152.5 86 81.4
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 1.9e-35 152.5 95 77.9
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 2.5e-35 152.1 119 66.4
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 3.3e-35 151.8 79 84.8
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 4.3e-35 151.4 107 69.2
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 7.4e-35 150.6 79 84.8
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 7.4e-35 150.6 79 84.8
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 7.4e-35 150.6 79 84.8
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 7.4e-35 150.6 86 80.2
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 9.6e-35 150.2 93 76.3
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 1.3e-34 149.8 85 80.0
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.3e-34 149.8 93 73.1
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.3e-34 149.8 93 73.1
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.6e-34 149.4 100 71.0
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 1.6e-34 149.4 93 75.3
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 1.6e-34 149.4 79 84.8
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 2.1e-34 149.1 91 73.6
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 2.1e-34 149.1 93 76.3
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 2.1e-34 149.1 93 75.3
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 2.8e-34 148.7 79 84.8
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 2.8e-34 148.7 96 72.9
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 3.7e-34 148.3 93 76.3
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 3.7e-34 148.3 100 71.0
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 4.8e-34 147.9 98 71.4
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 1.1e-33 146.7 91 73.6
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 1.1e-33 146.7 81 82.7
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 1.1e-33 146.7 98 74.5
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 1.4e-33 146.4 90 74.4
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 1.4e-33 146.4 99 69.7
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 1.8e-33 146.0 94 72.3
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 1.8e-33 146.0 88 77.3
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 1.8e-33 146.0 96 71.9
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 1.8e-33 146.0 96 69.8
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 2.4e-33 145.6 81 82.7
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 3.1e-33 145.2 88 76.1
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 4.0e-33 144.8 92 71.7
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 4.0e-33 144.8 92 71.7
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 5.3e-33 144.4 89 74.2
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 5.3e-33 144.4 89 74.2
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 5.3e-33 144.4 89 74.2
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 5.3e-33 144.4 89 74.2
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 5.3e-33 144.4 87 77.0
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 5.3e-33 144.4 91 75.8
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 9.0e-33 143.7 99 69.7
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.2e-32 143.3 88 75.0
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 1.2e-32 143.3 103 66.0
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 2.6e-32 142.1 88 75.0
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 4.5e-32 141.4 88 73.9
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 5.8e-32 141.0 87 77.0
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 1.3e-31 139.8 79 78.5
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 1.3e-31 139.8 79 78.5
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 1.3e-31 139.8 106 66.0
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 1.7e-31 139.4 76 81.6
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 1.4e-30 136.3 83 74.7
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 4.2e-30 134.8 75 78.7
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 1.2e-29 133.3 68 88.2
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 7.9e-29 130.6 86 68.6
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 7.9e-29 130.6 65 87.7
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 6.7e-28 127.5 66 84.8
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 2.5e-27 125.6 66 84.8
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 3.3e-27 125.2 82 67.1
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 5.7e-27 124.4 66 81.8
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 3.7e-26 121.7 78 70.5
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.4e-25 119.0 53 98.1
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 6.9e-25 117.5 79 72.2
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 1.7e-23 112.8 74 67.6
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 2.9e-23 112.1 63 77.8
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 3.8e-23 111.7 86 58.1
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 6.5e-23 110.9 65 80.0
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 2.5e-22 109.0 91 61.5
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 9.3e-22 107.1 63 74.6
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 1.6e-21 106.3 62 75.8
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 2.1e-21 105.9 66 72.7
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 7.9e-21 104.0 63 71.4
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 1.3e-20 103.2 100 50.0
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 2.3e-20 102.4 64 70.3
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 5.1e-20 101.3 74 64.9
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 1.1e-17 93.6 59 71.2
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 9.0e-17 90.5 59 72.9
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 1.3e-15 86.7 58 70.7
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 2.5e-14 82.4 50 72.0
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 3.2e-14 82.0 77 50.6
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 7.2e-14 80.9 73 53.4
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 6.1e-13 77.8 79 48.1
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 8.8e-12 73.9 80 50.0
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 8.8e-12 73.9 33 93.9
CBR_g29697 Chara braunii HOM05D035488 ORTHO05D007319 1.7e-07 59.7 64 43.8


User provided reference genes

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