Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003033g0050 Nicotiana tabacum HOM05D004118 ORTHO05D004686 0.0e+00 1140.9 692 100.0
Nitab4.5_0000332g0190 Nicotiana tabacum HOM05D004118 ORTHO05D004686 8.1e-262 907.1 695 79.1
Peaxi162Scf00000g00285 Petunia axillaris HOM05D004118 ORTHO05D004686 1.4e-165 587.4 685 56.6
Nitab4.5_0011677g0020 Nicotiana tabacum HOM05D004118 ORTHO05D004686 9.5e-154 548.1 748 53.5
Nitab4.5_0000246g0070 Nicotiana tabacum HOM05D004118 ORTHO05D004686 5.8e-151 538.9 750 51.7
PGSC0003DMG400015371 Solanum tuberosum HOM05D004118 ORTHO05D004686 3.5e-148 529.6 696 54.5
PGSC0003DMG400012399 Solanum tuberosum HOM05D004118 ORTHO05D004686 1.1e-146 524.6 746 50.8
Sopen07g030960 Solanum pennellii HOM05D004118 ORTHO05D004686 8.9e-144 515.0 751 51.8
Solyc07g062730.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 7.6e-143 511.9 744 49.6
Sopen12g005780 Solanum pennellii HOM05D004118 ORTHO05D004686 1.3e-139 501.1 706 51.1
CAN.G162.27 Capsicum annuum HOM05D004118 ORTHO05D004686 2.9e-134 483.4 690 47.8
Cc05_g11580 Coffea canephora HOM05D004118 ORTHO05D004686 6.7e-123 445.7 846 48.9
MSTRG.6813 Avicennia marina HOM05D004118 ORTHO05D004686 7.6e-119 432.2 773 45.1
CSS0010936 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 5.5e-117 426.0 740 53.0
Medtr2g078530 Medicago truncatula HOM05D004118 ORTHO05D004686 1.2e-116 424.9 747 48.3
CiPaw.11G166400 Carya illinoinensis HOM05D004118 ORTHO05D004686 1.8e-115 421.0 754 44.2
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 2.5e-114 417.2 765 49.7
Manes.15G090200 Manihot esculenta HOM05D004118 ORTHO05D004686 1.3e-113 414.8 758 43.1
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 2.4e-112 410.6 743 54.0
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 5.3e-112 409.5 743 46.3
MD03G1236100 Malus domestica HOM05D004118 ORTHO05D004686 9.0e-112 408.7 764 46.3
MD11G1256900 Malus domestica HOM05D004118 ORTHO05D004686 5.0e-110 402.9 768 49.1
TWI39G0897 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.4e-109 401.4 747 44.7
VMungo1080G0043 Vigna mungo HOM05D004118 ORTHO05D004686 3.2e-109 400.2 726 44.2
Phvul.005G069300 Phaseolus vulgaris HOM05D004118 ORTHO05D004686 4.2e-109 399.8 747 45.0
SalBow8G5405 Salvia bowleyana HOM05D004118 ORTHO05D004686 4.2e-109 399.8 681 51.7
Potri.011G097700 Populus trichocarpa HOM05D004118 ORTHO05D004686 7.2e-109 399.1 791 41.5
CiPaw.12G116800 Carya illinoinensis HOM05D004118 ORTHO05D004686 9.3e-109 398.7 745 44.3
FvH4_3g19150 Fragaria vesca HOM05D004118 ORTHO05D004686 5.1e-107 392.9 763 44.2
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 5.1e-107 392.9 762 45.5
DCAR_021002 Daucus carota HOM05D004118 ORTHO05D004686 1.1e-106 391.7 771 40.6
Cpa.g.sc80.12 Carica papaya HOM05D004118 ORTHO05D004686 1.5e-106 391.3 788 41.8
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 3.3e-106 390.2 755 46.8
FAN25G0990 Fragaria x ananassa HOM05D004118 ORTHO05D004686 9.7e-106 388.7 757 44.6
FAN11G3070 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.3e-105 388.3 764 43.6
Psat5g241400 Pisum sativum HOM05D004118 ORTHO05D004686 1.3e-105 388.3 749 47.9
SGA_v2.0_scaffold73G24222 Striga asiatica HOM05D004118 ORTHO05D004686 3.7e-105 386.7 793 42.0
FAN16G2866 Fragaria x ananassa HOM05D004118 ORTHO05D004686 1.1e-104 385.2 753 44.8
Glyma.13G273000 Glycine max HOM05D004118 ORTHO05D004686 4.1e-104 383.3 760 41.4
Sabra11G0090500 Salix brachista HOM05D004118 ORTHO05D004686 7.7e-103 379.0 745 44.0
Sabra11G0091500 Salix brachista HOM05D004118 ORTHO05D004686 1.3e-102 378.3 742 43.9
FAN21G0508 Fragaria x ananassa HOM05D004118 ORTHO05D004686 3.8e-102 376.7 760 45.3
MSTRG.15246 Avicennia marina HOM05D004118 ORTHO05D004686 5.0e-102 376.3 720 43.3
TAR627G0391 Trochodendron aralioides HOM05D004118 ORTHO05D004686 2.5e-101 374.0 744 48.9
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 2.1e-100 370.9 741 44.1
RcHm_v2.0_Chr5g0032241 Rosa chinensis HOM05D004118 ORTHO05D004686 6.1e-100 369.4 754 48.5
Migut.M00768 Erythranthe guttata HOM05D004118 ORTHO05D004686 1.4e-99 368.2 833 41.2
Eucgr.F01179 Eucalyptus grandis HOM05D004118 ORTHO05D004686 3.0e-99 367.1 768 44.5
Manes.03G104700 Manihot esculenta HOM05D004118 ORTHO05D004686 3.9e-99 366.7 734 48.4
Sc16g0007320 Simmondsia chinensis HOM05D004118 ORTHO05D004686 6.7e-99 365.9 797 40.2
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 6.3e-97 359.4 744 43.1
TWI38G2280 Tripterygium wilfordii HOM05D004118 ORTHO05D004686 1.1e-96 358.6 730 42.3
Duzib213G0890 Durio zibethinus HOM05D004118 ORTHO05D004686 4.1e-96 356.7 770 41.0
Thecc.07G100000 Theobroma cacao HOM05D004118 ORTHO05D004686 4.1e-96 356.7 795 42.4
Lsat_1_v5_gn_9_98421 Lactuca sativa HOM05D004118 ORTHO05D004686 6.9e-96 355.9 764 39.7
Oeu019296.1 Olea europaea HOM05D004118 ORTHO05D004686 9.1e-96 355.5 730 45.6
CSS0009782 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 2.1e-92 344.4 659 48.1
Glyma.12G227300 Glycine max HOM05D004118 ORTHO05D004686 7.9e-92 342.4 744 43.4
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.4e-91 341.7 766 44.5
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 6.7e-91 339.3 725 39.0
Lj8C153G19 Lonicera japonica HOM05D004118 ORTHO05D004686 1.5e-90 338.2 686 41.5
MSTRG.12889 Avicennia marina HOM05D004118 ORTHO05D004686 7.4e-90 335.9 727 40.9
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 4.8e-89 333.2 807 42.8
Oeu025351.1 Olea europaea HOM05D004118 ORTHO05D004686 4.8e-89 333.2 720 44.2
Potri.001G373100 Populus trichocarpa HOM05D004118 ORTHO05D004686 3.1e-88 330.5 732 41.1
Sabra16G0245500 Salix brachista HOM05D004118 ORTHO05D004686 4.1e-88 330.1 701 42.9
Gohir.A13G147400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 9.1e-88 328.9 759 44.5
HanXRQChr03g0070941 Helianthus annuus HOM05D004118 ORTHO05D004686 4.5e-87 326.6 747 38.3
Gorai.013G171900 Gossypium raimondii HOM05D004118 ORTHO05D004686 1.7e-86 324.7 763 44.8
Ciclev10007570m.g Citrus clementina HOM05D004118 ORTHO05D004686 2.2e-86 324.3 786 40.2
Lj3g0023579 Lotus japonicus HOM05D004118 ORTHO05D004686 6.5e-86 322.8 757 41.9
Dinv20215 Davidia involucrata HOM05D004118 ORTHO05D004686 1.5e-85 321.6 702 45.2
TPR.G17554 Trifolium pratense HOM05D004118 ORTHO05D004686 1.9e-85 321.2 736 42.0
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 2.5e-85 320.9 723 45.0
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 1.6e-84 318.2 737 42.7
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 1.6e-84 318.2 801 42.6
Actinidia07500 Actinidia chinensis HOM05D004118 ORTHO05D004686 2.1e-84 317.8 725 42.6
Sed0017211 Sechium edule HOM05D004118 ORTHO05D004686 3.0e-83 313.9 736 45.9
ECA240G2123 Erigeron canadensis HOM05D004118 ORTHO05D004686 1.7e-81 308.1 760 36.4
Lsat_1_v5_gn_7_103661 Lactuca sativa HOM05D004118 ORTHO05D004686 1.2e-79 302.0 681 45.4
Lalb_Chr25g0286181 Lupinus albus HOM05D004118 ORTHO05D004686 2.7e-79 300.8 690 38.8
vmacro11898 Vaccinium macrocarpon HOM05D004118 ORTHO05D004686 1.0e-78 298.9 696 40.8
Dinv14950 Davidia involucrata HOM05D004118 ORTHO05D004686 1.9e-77 294.7 638 45.1
Gorai.002G066200 Gossypium raimondii HOM05D004118 ORTHO05D004686 3.2e-77 293.9 643 47.7
Duzib170G0047 Durio zibethinus HOM05D004118 ORTHO05D004686 7.2e-77 292.7 719 38.9
unitig_747.g21581 Utricularia gibba HOM05D004118 ORTHO05D004686 2.7e-76 290.8 812 35.3
CANSAT35G0858 Cannabis sativa HOM05D004118 ORTHO05D004686 1.0e-75 288.9 761 39.6
Lsat_1_v5_gn_5_128820 Lactuca sativa HOM05D004118 ORTHO05D004686 6.8e-75 286.2 716 39.0
ECA236G3195 Erigeron canadensis HOM05D004118 ORTHO05D004686 8.8e-75 285.8 701 37.4
Ah.06g194460 Amaranthus hybridus HOM05D004118 ORTHO05D004686 2.6e-74 284.3 741 40.5
CSS0030924 Camellia sinensis var. sinensis HOM05D004118 ORTHO05D004686 6.3e-73 279.6 667 38.4
Rhsim04G0023200 Rhododendron simsii HOM05D004118 ORTHO05D004686 8.3e-73 279.3 713 39.6
PSO675G0887 Papaver somniferum HOM05D004118 ORTHO05D004686 1.4e-72 278.5 751 36.4
EL10Ac4g08266 Beta vulgaris HOM05D004118 ORTHO05D004686 1.8e-72 278.1 774 42.6
Gohir.D01G046700 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.3e-70 271.2 679 45.2
Rhsim06G0203400 Rhododendron simsii HOM05D004118 ORTHO05D004686 2.5e-69 267.7 722 43.2
PSO478G3864 Papaver somniferum HOM05D004118 ORTHO05D004686 7.2e-69 266.2 805 35.2
THA.LOC104810455 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 4.7e-68 263.5 746 36.3
unitig_37.g12565 Utricularia gibba HOM05D004118 ORTHO05D004686 4.7e-68 263.5 697 36.4
Aa31LG8G2310 Aethionema arabicum HOM05D004118 ORTHO05D004686 1.5e-66 258.5 753 34.3
Solyc12g014040.1 Solanum lycopersicum HOM05D004118 ORTHO05D004686 2.6e-66 257.7 234 66.2
Sp3g13300 Schrenkiella parvula HOM05D004118 ORTHO05D004686 3.4e-66 257.3 783 33.7
PSO017G1325 Papaver somniferum HOM05D004118 ORTHO05D004686 2.8e-65 254.2 790 33.4
MBI07_g32544_MAGBIO Magnolia biondii HOM05D004118 ORTHO05D004686 8.3e-65 252.7 797 41.2
Thhalv10020211m.g Eutrema salsugineum HOM05D004118 ORTHO05D004686 5.4e-64 250.0 758 34.4
Ah.04g162010 Amaranthus hybridus HOM05D004118 ORTHO05D004686 1.0e-62 245.7 731 41.0
Sed0016267 Sechium edule HOM05D004118 ORTHO05D004686 2.3e-62 244.6 703 34.4
Hma1.2p1_0313F.1_g121640 Hydrangea macrophylla HOM05D004118 ORTHO05D004686 2.9e-62 244.2 676 42.3
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 3.8e-62 243.8 771 40.7
DCAR_019575 Daucus carota HOM05D004118 ORTHO05D004686 8.6e-62 242.7 719 33.2
HanXRQChr10g0302481 Helianthus annuus HOM05D004118 ORTHO05D004686 1.5e-61 241.9 717 38.6
PSO541G0755 Papaver somniferum HOM05D004118 ORTHO05D004686 2.1e-60 238.0 766 33.7
AUR62036141 Chenopodium quinoa HOM05D004118 ORTHO05D004686 4.7e-60 236.9 726 41.3
ECA234G1224 Erigeron canadensis HOM05D004118 ORTHO05D004686 6.1e-60 236.5 724 35.6
arahy.Tifrunner.gnm1.ann1.YMW7LF Arachis hypogaea HOM05D004118 ORTHO05D004686 8.0e-60 236.1 694 35.6
Lalb_Chr01g0006651 Lupinus albus HOM05D004118 ORTHO05D004686 2.6e-58 231.1 691 32.4
AL3G27450 Arabidopsis lyrata HOM05D004118 ORTHO05D004686 7.3e-53 213.0 755 33.2
BcaB04g20948 Brassica carinata HOM05D004118 ORTHO05D004686 1.8e-51 208.4 680 31.6
CARHR090060 Cardamine hirsuta HOM05D004118 ORTHO05D004686 5.2e-51 206.8 757 31.7
DCAR_017117 Daucus carota HOM05D004118 ORTHO05D004686 5.2e-51 206.8 706 32.6
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 7.0e-48 196.4 731 34.6
Gohir.A08G021600 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.2e-47 195.7 699 30.3
Lalb_Chr19g0134031 Lupinus albus HOM05D004118 ORTHO05D004686 1.2e-44 185.7 676 30.8
Gohir.D08G032400 Gossypium hirsutum HOM05D004118 ORTHO05D004686 2.6e-42 177.9 700 29.7
HanXRQChr15g0494281 Helianthus annuus HOM05D004118 ORTHO05D004686 2.6e-42 177.9 772 36.5
SGA_v2.0_scaffold70G23697 Striga asiatica HOM05D004118 ORTHO05D004686 4.9e-41 173.7 709 32.3
Gorai.004G029800 Gossypium raimondii HOM05D004118 ORTHO05D004686 6.4e-41 173.3 699 28.9
GSVIVG01014262001 Vitis vinifera HOM05D004118 ORTHO05D003395 6.4e-41 173.3 259 48.3
arahy.Tifrunner.gnm1.ann1.82B0EJ Arachis hypogaea HOM05D004118 ORTHO05D004686 5.4e-40 170.2 600 32.7
HPP92_002942 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.7e-39 167.9 739 31.7
Lalb_Chr03g0030811 Lupinus albus HOM05D004118 ORTHO05D004686 3.5e-39 167.5 680 35.0
Actinidia14383 Actinidia chinensis HOM05D004118 ORTHO05D004686 5.1e-38 163.7 152 61.8
HPP92_003871 Vanilla planifolia HOM05D004118 ORTHO05D004686 2.4e-35 154.8 752 31.2
CAN.G329.5 Capsicum annuum HOM05D004118 ORTHO05D004686 8.9e-35 152.9 148 60.8
BcaB06g29535 Brassica carinata HOM05D004118 ORTHO05D004686 2.0e-34 151.8 744 30.5
C05p52120 Brassica napus HOM05D004118 ORTHO05D004686 4.4e-34 150.6 736 30.6
BolC5t33897H Brassica oleracea HOM05D004118 ORTHO05D004686 4.4e-34 150.6 736 30.6
SGA_v2.0_scaffold130G34343 Striga asiatica HOM05D004118 ORTHO05D004686 5.8e-34 150.2 705 29.8
C01p49420 Brassica napus HOM05D004118 ORTHO05D004686 1.7e-33 148.7 669 30.0
BcaC09g48474 Brassica carinata HOM05D004118 ORTHO05D004686 2.2e-33 148.3 661 30.7
BolC1t04899H Brassica oleracea HOM05D004118 ORTHO05D004686 2.9e-33 147.9 646 30.8
Zm00001eb014970 Zea mays HOM05D004118 ORTHO05D004686 1.4e-32 145.6 848 32.1
PSO675G3813 Papaver somniferum HOM05D004118 ORTHO05D004686 2.4e-32 144.8 388 36.3
BraA05t22255Z Brassica rapa HOM05D004118 ORTHO05D004686 3.2e-32 144.4 763 29.2
A05p34340 Brassica napus HOM05D004118 ORTHO05D004686 9.2e-32 142.9 762 29.5
Lsat_1_v5_gn_4_172920 Lactuca sativa HOM05D004118 ORTHO05D004686 3.5e-31 141.0 196 51.0
Zm00001eb395950 Zea mays HOM05D004118 ORTHO05D004686 4.6e-31 140.6 824 32.3
Gohir.A01G060200 Gossypium hirsutum HOM05D004118 ORTHO05D004686 1.0e-30 139.4 472 44.3
Nn1g06377 Nelumbo nucifera HOM05D004118 ORTHO05D004686 1.0e-30 139.4 204 46.1
Os06g0352900 Oryza sativa ssp. japonica HOM05D004118 ORTHO05D004686 1.1e-29 136.0 848 30.4
HanXRQChr12g0372791 Helianthus annuus HOM05D004118 ORTHO05D004686 3.3e-29 134.4 155 53.5
Cc04_g12070 Coffea canephora HOM05D004118 ORTHO05D004686 4.7e-28 130.6 126 59.5
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 8.1e-28 129.8 685 34.2
THA.LOC104798758 Tarenaya hassleriana HOM05D004118 ORTHO05D004686 4.4e-26 124.0 548 28.8
HPP92_003895 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.7e-25 122.1 393 31.8
Atru.chr2.2380 Acer truncatum HOM05D004118 ORTHO05D004686 3.2e-24 117.9 294 36.7
Atru.chr2.2381 Acer truncatum HOM05D004118 ORTHO05D004686 5.4e-24 117.1 152 51.3
Actinidia33372 Actinidia chinensis HOM05D004118 ORTHO05D004686 1.2e-23 115.9 110 64.5
Lsat_1_v5_gn_1_36460 Lactuca sativa HOM05D004118 ORTHO05D004686 1.6e-23 115.5 146 53.4
AT3G15095 Arabidopsis thaliana HOM05D004118 ORTHO05D004686 2.7e-23 114.8 464 35.1
AUR62019494 Chenopodium quinoa HOM05D004118 ORTHO05D004686 4.3e-21 107.5 510 36.3
Lj1P837T15 Lonicera japonica HOM05D004118 ORTHO05D004686 1.3e-20 105.9 99 66.7
CDE10G0292 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 1.1e-16 92.8 664 25.2
HPP92_003896 Vanilla planifolia HOM05D004118 ORTHO05D004686 1.8e-14 85.5 148 41.2
Cfa006262 Carpinus fangiana HOM05D000001 ORTHO05D000003 1.9e-13 82.0 122 44.3
CDE10G0599 Ceratophyllum demersum HOM05D004118 ORTHO05D004686 7.4e-13 80.1 242 28.5
SEGI_02629 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 1.1e-11 76.3 364 26.9
Lsat_1_v5_gn_5_162921 Lactuca sativa HOM05D004118 ORTHO05D004686 1.3e-09 69.3 70 62.9
TPR.G17527 Trifolium pratense HOM05D004118 ORTHO05D004686 2.9e-09 68.2 46 71.7
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla HOM05D004499 ORTHO05D004928 8.4e-09 66.6 352 27.0
Medtr1g066750 Medicago truncatula HOM05D004499 ORTHO05D004928 3.2e-08 64.7 342 27.2
TWI53G1356 Tripterygium wilfordii HOM05D004499 ORTHO05D004928 2.7e-07 61.6 285 26.0
Haze_20629 Corylus avellana HOM05D004499 ORTHO05D004928 4.6e-07 60.8 303 28.4
Aqoxy4G03228 Aquilegia oxysepala HOM05D004499 ORTHO05D004928 7.9e-07 60.1 288 27.8
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 2.3e-06 58.5 98 42.9
MD04G1102600 Malus domestica HOM05D004499 ORTHO05D004928 3.0e-06 58.2 340 29.1
Cfa017521 Carpinus fangiana HOM05D004499 ORTHO05D004928 3.9e-06 57.8 294 27.9


User provided reference genes

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