Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003030g0100 Nicotiana tabacum HOM05D006402 ORTHO05D008099 1.7e-82 309.3 158 100.0
Sopen04g035580 Solanum pennellii HOM05D006402 ORTHO05D008099 1.8e-68 262.7 158 83.5
PGSC0003DMG400009954 Solanum tuberosum HOM05D006402 ORTHO05D008099 5.3e-68 261.2 158 83.5
Solyc04g081940.3 Solanum lycopersicum HOM05D006402 ORTHO05D008099 6.9e-68 260.8 158 82.9
CAN.G311.71 Capsicum annuum HOM05D006402 ORTHO05D008099 9.1e-68 260.4 158 82.9
Sopen02g030620 Solanum pennellii HOM05D006402 ORTHO05D008099 2.2e-66 255.8 158 81.6
Peaxi162Scf00174g00075 Petunia axillaris HOM05D006402 ORTHO05D008099 1.9e-65 252.7 151 84.8
Solyc02g085937.1 Solanum lycopersicum HOM05D006402 ORTHO05D008099 4.2e-65 251.5 158 79.7
PGSC0003DMG400012651 Solanum tuberosum HOM05D006402 ORTHO05D008099 1.1e-60 236.9 136 87.5
Cc10_g01150 Coffea canephora HOM05D006402 ORTHO05D008099 1.5e-57 226.5 149 77.2
Nn6g34597 Nelumbo nucifera HOM05D006402 ORTHO05D008099 1.0e-55 220.3 155 71.6
Hma1.2p1_0023F.1_g015780 Hydrangea macrophylla HOM05D006402 ORTHO05D008099 6.7e-55 217.6 152 71.7
Lj4C17T8 Lonicera japonica HOM05D006402 ORTHO05D008099 8.8e-55 217.2 155 69.0
TAR628G1405 Trochodendron aralioides HOM05D006402 ORTHO05D008099 7.5e-54 214.2 151 71.5
Manes.05G142900 Manihot esculenta HOM05D006402 ORTHO05D008099 2.4e-52 209.1 151 69.5
Rhsim07G0248600 Rhododendron simsii HOM05D006402 ORTHO05D008099 9.1e-52 207.2 147 70.1
CiPaw.08G069100 Carya illinoinensis HOM05D006402 ORTHO05D008099 2.0e-51 206.1 123 82.9
COL.COLO4_26087 Corchorus olitorius HOM05D006402 ORTHO05D008099 2.7e-51 205.7 151 69.5
Dinv18455 Davidia involucrata HOM05D006402 ORTHO05D008099 2.7e-51 205.7 159 68.6
PGR142G1353 Punica granatum HOM05D006402 ORTHO05D008099 7.7e-51 204.1 160 66.9
HanXRQChr14g0429471 Helianthus annuus HOM05D006402 ORTHO05D008099 1.0e-50 203.8 156 68.6
Potri.002G016600 Populus trichocarpa HOM05D006402 ORTHO05D008099 1.0e-50 203.8 152 65.1
Aqoxy6G00455 Aquilegia oxysepala HOM05D006402 ORTHO05D008099 1.3e-50 203.4 152 69.1
CSS0047659 Camellia sinensis var. sinensis HOM05D006402 ORTHO05D008099 1.7e-50 203.0 156 67.3
Duzib093G1673 Durio zibethinus HOM05D006402 ORTHO05D008099 1.7e-50 203.0 127 78.0
SalBow6G2408 Salvia bowleyana HOM05D006402 ORTHO05D008099 8.5e-50 200.7 132 75.8
Sed0012705 Sechium edule HOM05D006402 ORTHO05D008099 8.5e-50 200.7 145 68.3
MELO3C011341.2 Cucumis melo HOM05D006402 ORTHO05D008099 1.1e-49 200.3 147 68.0
DCAR_007723 Daucus carota HOM05D006402 ORTHO05D008099 1.1e-49 200.3 146 65.8
MSTRG.1145 Avicennia marina HOM05D006402 ORTHO05D008099 1.5e-49 199.9 158 66.5
Migut.C00897 Erythranthe guttata HOM05D006402 ORTHO05D008099 1.5e-49 199.9 161 64.6
SalBow7G2419 Salvia bowleyana HOM05D006402 ORTHO05D008099 1.5e-49 199.9 129 77.5
Gohir.A06G001000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 3.2e-49 198.7 123 77.2
Sc02g0008870 Simmondsia chinensis HOM05D006402 ORTHO05D008099 4.2e-49 198.4 157 66.9
Haze_22699 Corylus avellana HOM05D006402 ORTHO05D008099 5.5e-49 198.0 156 67.9
SGA_v2.0_scaffold292G47394 Striga asiatica HOM05D006402 ORTHO05D008099 5.5e-49 198.0 159 62.3
AUR62016156 Chenopodium quinoa HOM05D006402 ORTHO05D008099 7.2e-49 197.6 124 76.6
AUR62036301 Chenopodium quinoa HOM05D006402 ORTHO05D008099 7.2e-49 197.6 124 77.4
Sabra02G0013300 Salix brachista HOM05D006402 ORTHO05D008099 1.2e-48 196.8 152 64.5
MD08G1008000 Malus domestica HOM05D006402 ORTHO05D008099 1.6e-48 196.4 154 67.5
Sed0017306 Sechium edule HOM05D006402 ORTHO05D008099 2.7e-48 195.7 138 66.7
EL10Ac1g02084 Beta vulgaris HOM05D006402 ORTHO05D008099 8.0e-48 194.1 151 65.6
unitig_32.g11245 Utricularia gibba HOM05D006402 ORTHO05D008099 8.0e-48 194.1 125 77.6
Gorai.010G001200 Gossypium raimondii HOM05D006402 ORTHO05D008099 1.0e-47 193.7 123 75.6
ClCG08G014030 Citrullus lanatus HOM05D006402 ORTHO05D008099 1.4e-47 193.4 125 73.6
Cfa014004 Carpinus fangiana HOM05D006402 ORTHO05D008099 2.3e-47 192.6 156 64.7
ECA238G1428 Erigeron canadensis HOM05D006402 ORTHO05D008099 3.0e-47 192.2 127 76.4
Prupe.1G359800 Prunus persica HOM05D006402 ORTHO05D008099 3.0e-47 192.2 123 74.8
TWI14G1330 Tripterygium wilfordii HOM05D006402 ORTHO05D008099 3.0e-47 192.2 155 64.5
Aa31LG4G6170 Aethionema arabicum HOM05D006402 ORTHO05D008099 5.2e-47 191.4 156 66.0
Gorai.006G031900 Gossypium raimondii HOM05D006402 ORTHO05D008099 5.2e-47 191.4 123 78.0
AL2G36080 Arabidopsis lyrata HOM05D006402 ORTHO05D008099 8.8e-47 190.7 153 68.6
CANSAT25G3089 Cannabis sativa HOM05D006402 ORTHO05D008099 8.8e-47 190.7 128 75.0
Gohir.A09G028000 Gossypium hirsutum HOM05D006402 ORTHO05D008099 8.8e-47 190.7 123 75.6
Sp5g31180 Schrenkiella parvula HOM05D006402 ORTHO05D008099 2.0e-46 189.5 157 66.2
arahy.Tifrunner.gnm1.ann1.KWDT0T Arachis hypogaea HOM05D006402 ORTHO05D008099 2.6e-46 189.1 123 71.5
Carub.0002s2294 Capsella rubella HOM05D006402 ORTHO05D008099 4.4e-46 188.3 154 67.5
CDE05G2406 Ceratophyllum demersum HOM05D000228 ORTHO05D001122 4.4e-46 188.3 115 83.5
Thecc.08G051300 Theobroma cacao HOM05D006402 ORTHO05D008099 4.4e-46 188.3 151 66.2
A07p41620 Brassica napus HOM05D006402 ORTHO05D008099 5.7e-46 188.0 154 65.6
BraA07t31691Z Brassica rapa HOM05D006402 ORTHO05D008099 5.7e-46 188.0 154 65.6
Atru.chr13.220 Acer truncatum HOM05D006402 ORTHO05D008099 9.8e-46 187.2 150 66.0
Ciclev10002722m.g Citrus clementina HOM05D006402 ORTHO05D008099 9.8e-46 187.2 124 72.6
CARHR069600 Cardamine hirsuta HOM05D006402 ORTHO05D008099 1.7e-45 186.4 157 64.3
Cpa.g.sc81.101 Carica papaya HOM05D006402 ORTHO05D008099 1.7e-45 186.4 122 73.8
Sc02g0008830 Simmondsia chinensis HOM05D006402 ORTHO05D008099 1.7e-45 186.4 157 63.7
BolC6t40039H Brassica oleracea HOM05D006402 ORTHO05D008099 2.8e-45 185.7 154 64.3
BcaC08g47098 Brassica carinata HOM05D006402 ORTHO05D008099 3.7e-45 185.3 153 66.0
QL02p012927 Quercus lobata HOM05D006402 ORTHO05D008099 3.7e-45 185.3 149 63.8
AT1G76060 Arabidopsis thaliana HOM05D006402 ORTHO05D008099 6.3e-45 184.5 153 68.0
Thhalv10019271m.g Eutrema salsugineum HOM05D006402 ORTHO05D008099 6.3e-45 184.5 154 65.6
A02p20400 Brassica napus HOM05D006402 ORTHO05D008099 8.3e-45 184.1 154 64.3
C06p50000 Brassica napus HOM05D006402 ORTHO05D008099 1.1e-44 183.7 154 63.6
arahy.Tifrunner.gnm1.ann1.R93WT9 Arachis hypogaea HOM05D006402 ORTHO05D008099 1.4e-44 183.3 128 68.0
PSO675G2459 Papaver somniferum HOM05D006402 ORTHO05D008099 5.4e-44 181.4 129 69.8
RcHm_v2.0_Chr6g0303641 Rosa chinensis HOM05D006402 ORTHO05D008099 9.1e-44 180.6 151 64.2
FAN20G3208 Fragaria x ananassa HOM05D006402 ORTHO05D008099 2.0e-43 179.5 152 63.8
FvH4_2g37980 Fragaria vesca HOM05D006402 ORTHO05D008099 2.7e-43 179.1 152 63.8
FAN27G3062 Fragaria x ananassa HOM05D006402 ORTHO05D008099 1.3e-42 176.8 123 72.4
MBI03_g11314_MAGBIO Magnolia biondii HOM05D006402 ORTHO05D008099 1.3e-42 176.8 157 59.2
Lalb_Chr23g0266011 Lupinus albus HOM05D006402 ORTHO05D008099 1.7e-42 176.4 126 65.9
THA.LOC104811442 Tarenaya hassleriana HOM05D006402 ORTHO05D008099 1.7e-42 176.4 159 57.9
PSO541G5119 Papaver somniferum HOM05D006402 ORTHO05D008099 6.5e-42 174.5 126 67.5
CsaV3_2G024420 Cucumis sativus L. HOM05D006402 ORTHO05D008099 5.5e-41 171.4 147 61.2
Eucgr.F01698 Eucalyptus grandis HOM05D006402 ORTHO05D008099 9.5e-41 170.6 153 62.1
Lsat_1_v5_gn_2_6761 Lactuca sativa HOM05D006402 ORTHO05D008099 1.6e-40 169.9 152 62.5
HPP92_013449 Vanilla planifolia HOM05D006402 ORTHO05D008099 1.6e-40 169.9 124 66.1
SEGI_22650 Sequoiadendron giganteum HOM05D006402 ORTHO05D008099 2.1e-40 169.5 130 63.1
Actinidia29765 Actinidia chinensis HOM05D006402 ORTHO05D008099 2.7e-40 169.1 152 58.6
Ca_13483_v3 Cicer arietinum L. HOM05D006402 ORTHO05D008099 6.1e-40 167.9 128 64.8
ATR0580G246 Amborella trichopoda HOM05D006402 ORTHO05D008099 8.8e-39 164.1 126 67.5
VMungo0647G0728 Vigna mungo HOM05D006402 ORTHO05D008099 1.2e-38 163.7 129 61.2
Lj5g0026723 Lotus japonicus HOM05D006402 ORTHO05D008099 4.4e-38 161.8 152 57.9
Glyma.17G261100 Glycine max HOM05D006402 ORTHO05D008099 5.7e-38 161.4 117 67.5
ATR0680G026 Amborella trichopoda HOM05D006402 ORTHO05D008099 1.3e-37 160.2 126 65.9
Gohir.D09G027401 Gossypium hirsutum HOM05D006402 ORTHO05D008099 1.3e-37 160.2 123 65.9
Phvul.001G003000 Phaseolus vulgaris HOM05D006402 ORTHO05D008099 2.2e-37 159.5 129 59.7
Psat6g001160 Pisum sativum HOM05D006402 ORTHO05D008099 1.4e-36 156.8 132 60.6
Glyma.09G042800 Glycine max HOM05D006402 ORTHO05D008099 1.8e-36 156.4 117 65.0
TPR.G26406 Trifolium pratense HOM05D006402 ORTHO05D008099 9.2e-36 154.1 130 60.0
SHI08020 Sapria himalayana HOM05D006402 ORTHO05D008099 2.7e-35 152.5 141 56.7
Os03g0136600 Oryza sativa ssp. japonica HOM05D006402 ORTHO05D008099 1.3e-34 150.2 127 60.6
Medtr1g026078 Medicago truncatula HOM05D006402 ORTHO05D008099 2.3e-34 149.4 125 60.8
BcaC03g15641 Brassica carinata HOM05D006402 ORTHO05D008099 2.9e-34 149.1 155 55.5
Zm00001eb002920 Zea mays HOM05D006402 ORTHO05D008099 6.6e-34 147.9 122 60.7
Pp3c14_25160 Physcomitrium patens HOM05D006402 ORTHO05D008099 3.7e-29 132.1 129 52.7
SMO358G0213 Selaginella moellendorffii HOM05D006402 ORTHO05D008099 3.7e-29 132.1 118 55.1
BolC2t09355H Brassica oleracea HOM05D006402 ORTHO05D008099 1.2e-27 127.1 152 48.0
C02p33500 Brassica napus HOM05D006402 ORTHO05D008099 1.6e-27 126.7 152 48.0
BraA02t07072Z Brassica rapa HOM05D006402 ORTHO05D008099 6.6e-26 121.3 85 69.4
AagrBONN_evm.TU.Sc2ySwM_228.4698 Anthoceros agrestis HOM05D006402 ORTHO05D008099 3.3e-25 119.0 114 55.3
BcaC08g47099 Brassica carinata HOM05D006402 ORTHO05D008099 6.2e-24 114.8 104 61.5
Mapoly0186s0006 Marchantia polymorpha HOM05D006402 ORTHO05D008099 5.2e-23 111.7 131 48.1
PRCOL_00001167 Prasinoderma coloniale HOM05D006402 ORTHO05D008099 2.2e-21 106.3 90 56.7
CBR_g51533 Chara braunii HOM05D006402 ORTHO05D008099 1.4e-20 103.6 116 47.4
QL08p014343 Quercus lobata HOM05D006402 ORTHO05D008099 7.0e-20 101.3 123 48.0
Eucgr.F01697 Eucalyptus grandis HOM05D006402 ORTHO05D008099 3.0e-18 95.9 99 51.5
MCO02G370 Micromonas commoda HOM05D006402 ORTHO05D008099 5.6e-17 91.7 81 51.9
MD15G1006900 Malus domestica HOM05D006402 ORTHO05D008099 7.3e-17 91.3 89 53.9
BcaC08g47297 Brassica carinata HOM05D006402 ORTHO05D008099 4.7e-16 88.6 155 38.7
Cre01.g028150 Chlamydomonas reinhardtii HOM05D006402 ORTHO05D008099 1.1e-15 87.4 110 40.9
Sed0026898 Sechium edule HOM05D006402 ORTHO05D008099 2.6e-14 82.8 114 46.5
Glyma.14G222200 Glycine max HOM05D006402 ORTHO05D008099 2.3e-10 69.7 85 52.9
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 4.7e-08 62.0 90 45.6
SEGI_35230 Sequoiadendron giganteum HOM05D006402 ORTHO05D387249 2.0e-06 56.6 50 48.0


User provided reference genes

Program Settings