Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003027g0090 Nicotiana tabacum HOM05D005123 ORTHO05D006532 6.9e-40 166.8 80 100.0
Nitab4.5_0004275g0030 Nicotiana tabacum HOM05D006218 ORTHO05D007338 1.4e-32 142.5 88 80.7
Nitab4.5_0002247g0060 Nicotiana tabacum HOM05D005123 ORTHO05D006532 1.5e-31 139.0 86 81.4
Nitab4.5_0010168g0020 Nicotiana tabacum HOM05D005123 ORTHO05D006532 1.5e-31 139.0 86 81.4
PGSC0003DMG400027514 Solanum tuberosum HOM05D005123 ORTHO05D006532 1.1e-26 122.9 86 72.1
Solyc01g097160.3 Solanum lycopersicum HOM05D005123 ORTHO05D006532 5.7e-26 120.6 86 69.8
Sopen01g040830 Solanum pennellii HOM05D005123 ORTHO05D006532 7.4e-26 120.2 86 69.8
CAN.G134.75 Capsicum annuum HOM05D005123 ORTHO05D006532 2.4e-24 115.2 86 70.9
CSS0014237 Camellia sinensis var. sinensis HOM05D005123 ORTHO05D006532 1.7e-22 109.0 86 65.1
CSS0032730 Camellia sinensis var. sinensis HOM05D005123 ORTHO05D006532 1.7e-22 109.0 86 65.1
Peaxi162Scf00282g00718 Petunia axillaris HOM05D005123 ORTHO05D006532 2.2e-22 108.6 78 67.9
QL03p027727 Quercus lobata HOM05D005123 ORTHO05D006532 3.2e-21 104.8 85 62.4
Actinidia18366 Actinidia chinensis HOM05D005123 ORTHO05D006532 5.5e-21 104.0 75 68.0
Oeu038460.1 Olea europaea HOM05D005123 ORTHO05D006532 1.2e-20 102.8 98 56.1
vmacro13816 Vaccinium macrocarpon HOM05D005123 ORTHO05D006532 1.2e-20 102.8 103 53.4
RcHm_v2.0_Chr4g0421451 Rosa chinensis HOM05D005123 ORTHO05D006532 3.6e-20 101.3 86 60.5
unitig_0.g2303 Utricularia gibba HOM05D005123 ORTHO05D006532 3.6e-20 101.3 84 60.7
CANSAT54G2420 Cannabis sativa HOM05D005123 ORTHO05D006532 4.7e-20 100.9 85 57.6
TAR365G0219 Trochodendron aralioides HOM05D005123 ORTHO05D006532 4.7e-20 100.9 80 62.5
GSVIVG01036232001 Vitis vinifera HOM05D005123 ORTHO05D006532 6.1e-20 100.5 83 60.2
FvH4_4g17540 Fragaria vesca HOM05D005123 ORTHO05D006532 1.8e-19 99.0 86 60.5
Rhsim07G0074600 Rhododendron simsii HOM05D005123 ORTHO05D006532 1.8e-19 99.0 78 66.7
PGR004G1863 Punica granatum HOM05D005123 ORTHO05D006532 2.3e-19 98.6 75 61.3
ATR0665G099 Amborella trichopoda HOM05D005123 ORTHO05D006532 3.0e-19 98.2 71 66.2
Nn1g02615 Nelumbo nucifera HOM05D005123 ORTHO05D006532 3.0e-19 98.2 77 59.7
CsaV3_2G003960 Cucumis sativus L. HOM05D005123 ORTHO05D006532 3.9e-19 97.8 86 55.8
Lsat_1_v5_gn_0_36021 Lactuca sativa HOM05D005123 ORTHO05D006532 3.9e-19 97.8 71 67.6
MBI11_g20622_MAGBIO Magnolia biondii HOM05D005123 ORTHO05D006532 3.9e-19 97.8 78 60.3
Duzib177G0775 Durio zibethinus HOM05D005123 ORTHO05D006532 5.1e-19 97.4 86 54.7
Eucgr.H04317 Eucalyptus grandis HOM05D005123 ORTHO05D006532 5.1e-19 97.4 86 59.3
AT3G04650 Arabidopsis thaliana HOM05D005123 ORTHO05D006532 6.7e-19 97.1 83 59.0
CiPaw.08G122100 Carya illinoinensis HOM05D005123 ORTHO05D006532 6.7e-19 97.1 81 59.3
Haze_04379 Corylus avellana HOM05D005123 ORTHO05D006532 6.7e-19 97.1 86 55.8
SalBow4G1942 Salvia bowleyana HOM05D005123 ORTHO05D006532 6.7e-19 97.1 98 55.1
Thecc.05G280500 Theobroma cacao HOM05D005123 ORTHO05D006532 6.7e-19 97.1 86 57.0
Carub.0003s0381 Capsella rubella HOM05D005123 ORTHO05D006532 8.8e-19 96.7 83 57.8
MD04G1226700 Malus domestica HOM05D005123 ORTHO05D006532 8.8e-19 96.7 86 58.1
Sp3g03490 Schrenkiella parvula HOM05D005123 ORTHO05D006532 8.8e-19 96.7 83 57.8
THA.LOC104802845 Tarenaya hassleriana HOM05D005123 ORTHO05D006532 8.8e-19 96.7 83 59.0
VMungo0540G0367 Vigna mungo HOM05D005123 ORTHO05D006532 1.1e-18 96.3 84 57.1
Migut.N01919 Erythranthe guttata HOM05D005123 ORTHO05D006532 1.5e-18 95.9 86 57.0
A03p33760 Brassica napus HOM05D005123 ORTHO05D006532 2.0e-18 95.5 83 59.0
BraA03t12549Z Brassica rapa HOM05D005123 ORTHO05D006532 2.0e-18 95.5 83 59.0
FAN12G0393 Fragaria x ananassa HOM05D005123 ORTHO05D006532 2.0e-18 95.5 79 59.5
FAN12G0908 Fragaria x ananassa HOM05D005123 ORTHO05D006532 2.0e-18 95.5 79 59.5
HanXRQChr09g0259781 Helianthus annuus HOM05D005123 ORTHO05D006532 2.0e-18 95.5 71 66.2
Hma1.2p1_0817F.1_g223190 Hydrangea macrophylla HOM05D005123 ORTHO05D006532 2.0e-18 95.5 81 59.3
AL3G14690 Arabidopsis lyrata HOM05D005123 ORTHO05D006532 2.6e-18 95.1 80 58.8
BcaC01g04358 Brassica carinata HOM05D005123 ORTHO05D006532 2.6e-18 95.1 83 57.8
C03p41060 Brassica napus HOM05D005123 ORTHO05D006532 2.6e-18 95.1 83 57.8
BolC3t16395H Brassica oleracea HOM05D005123 ORTHO05D006532 2.6e-18 95.1 83 57.8
Lalb_Chr18g0043951 Lupinus albus HOM05D005123 ORTHO05D006532 2.6e-18 95.1 78 60.3
Aa31LG5G15060 Aethionema arabicum HOM05D005123 ORTHO05D006532 3.3e-18 94.7 83 57.8
CARHR078850 Cardamine hirsuta HOM05D005123 ORTHO05D006532 3.3e-18 94.7 83 57.8
Cfa006396 Carpinus fangiana HOM05D005123 ORTHO05D006532 3.3e-18 94.7 86 54.7
COL.COLO4_15380 Corchorus olitorius HOM05D005123 ORTHO05D006532 3.3e-18 94.7 79 55.7
PSO063G6470 Papaver somniferum HOM05D005123 ORTHO05D006532 3.3e-18 94.7 80 57.5
Psat0s169g0040 Pisum sativum HOM05D005123 ORTHO05D006532 3.3e-18 94.7 83 57.8
Prupe.6G345400 Prunus persica HOM05D005123 ORTHO05D006532 3.3e-18 94.7 75 62.7
BcaB04g19310 Brassica carinata HOM05D005123 ORTHO05D006532 4.4e-18 94.4 83 57.8
Atru.BG.126.p Acer truncatum HOM05D005123 ORTHO05D006532 7.4e-18 93.6 71 62.0
Medtr7g115310 Medicago truncatula HOM05D005123 ORTHO05D006532 7.4e-18 93.6 83 57.8
Ciclev10029972m.g Citrus clementina HOM05D005123 ORTHO05D006532 9.7e-18 93.2 73 58.9
Dinv17936 Davidia involucrata HOM05D005123 ORTHO05D006532 9.7e-18 93.2 68 67.6
Lj1g0023983 Lotus japonicus HOM05D005123 ORTHO05D006532 9.7e-18 93.2 84 53.6
Hund06950 Selenicereus undatus HOM05D005123 ORTHO05D006532 9.7e-18 93.2 70 67.1
arahy.Tifrunner.gnm1.ann1.01P7ER Arachis hypogaea HOM05D005123 ORTHO05D006532 1.3e-17 92.8 79 59.5
arahy.Tifrunner.gnm1.ann1.9VED02 Arachis hypogaea HOM05D005123 ORTHO05D006532 1.3e-17 92.8 79 59.5
Ciclev10029649m.g Citrus clementina HOM05D005123 ORTHO05D006532 1.7e-17 92.4 74 58.1
ECA232G3987 Erigeron canadensis HOM05D005123 ORTHO05D006532 2.8e-17 91.7 71 62.0
Glyma.19G245900 Glycine max HOM05D005123 ORTHO05D006532 2.8e-17 91.7 83 55.4
Phvul.006G102800 Phaseolus vulgaris HOM05D005123 ORTHO05D006532 2.8e-17 91.7 84 54.8
Cc02_g30900 Coffea canephora HOM05D005123 ORTHO05D006532 3.7e-17 91.3 97 50.5
Os12g0597400 Oryza sativa ssp. japonica HOM05D005123 ORTHO05D006532 3.7e-17 91.3 86 53.5
SGA_v2.0_scaffold80G25897 Striga asiatica HOM05D005123 ORTHO05D006532 3.7e-17 91.3 86 54.7
Thhalv10020605m.g Eutrema salsugineum HOM05D005123 ORTHO05D006532 4.8e-17 90.9 83 54.2
Lj9C664G10 Lonicera japonica HOM05D005123 ORTHO05D006532 6.3e-17 90.5 97 51.5
DCAR_006646 Daucus carota HOM05D005123 ORTHO05D006532 8.2e-17 90.1 82 56.1
TPR.G6919 Trifolium pratense HOM05D005123 ORTHO05D006532 1.1e-16 89.7 83 55.4
Potri.005G055800 Populus trichocarpa HOM05D005123 ORTHO05D006532 1.8e-16 89.0 86 53.5
Aqoxy5G00319 Aquilegia oxysepala HOM05D005123 ORTHO05D006532 2.4e-16 88.6 79 55.7
Cpa.g.sc736.2 Carica papaya HOM05D005123 ORTHO05D006532 2.4e-16 88.6 74 56.8
Sc06g0003780 Simmondsia chinensis HOM05D005123 ORTHO05D006532 2.4e-16 88.6 72 61.1
PSO170G0405 Papaver somniferum HOM05D005123 ORTHO05D006532 3.1e-16 88.2 74 56.8
AUR62001056 Chenopodium quinoa HOM05D005123 ORTHO05D006532 4.1e-16 87.8 73 54.8
Ca_09430_v3 Cicer arietinum L. HOM05D005123 ORTHO05D006532 4.1e-16 87.8 83 55.4
Sed0022916 Sechium edule HOM05D005123 ORTHO05D006532 4.1e-16 87.8 86 52.3
HPP92_026486 Vanilla planifolia HOM05D005123 ORTHO05D006532 4.1e-16 87.8 83 51.8
MSTRG.5089 Avicennia marina HOM05D005123 ORTHO05D006532 7.0e-16 87.0 69 60.9
FAN07G0296 Fragaria x ananassa HOM05D005123 ORTHO05D006532 7.0e-16 87.0 68 63.2
Ah.04g162190 Amaranthus hybridus HOM05D005123 ORTHO05D006532 9.1e-16 86.7 70 55.7
AUR62044106 Chenopodium quinoa HOM05D005123 ORTHO05D006532 9.1e-16 86.7 76 52.6
Sabra05G0048700 Salix brachista HOM05D005123 ORTHO05D006532 9.1e-16 86.7 86 51.2
EL10Ac4g09082 Beta vulgaris HOM05D005123 ORTHO05D006532 1.2e-15 86.3 70 55.7
Zm00001eb030960 Zea mays HOM05D005123 ORTHO05D006532 1.6e-15 85.9 84 50.0
AUR62004896 Chenopodium quinoa HOM05D005123 ORTHO05D006532 2.0e-15 85.5 73 53.4
HPP92_014225 Vanilla planifolia HOM05D005123 ORTHO05D006532 3.5e-15 84.7 83 50.6
Manes.08G136400 Manihot esculenta HOM05D005123 ORTHO05D006532 1.7e-14 82.4 70 57.1
Gohir.A08G216000 Gossypium hirsutum HOM05D005123 ORTHO05D006532 2.2e-14 82.0 89 51.7
Gohir.D08G232600 Gossypium hirsutum HOM05D005123 ORTHO05D006532 2.2e-14 82.0 89 51.7
Gorai.004G247100 Gossypium raimondii HOM05D005123 ORTHO05D006532 2.2e-14 82.0 89 51.7
Mapoly0079s0067 Marchantia polymorpha HOM05D005123 ORTHO05D006532 5.0e-14 80.9 68 58.8
TWI12G0989 Tripterygium wilfordii HOM05D005123 ORTHO05D006532 5.0e-14 80.9 64 59.4
Ciclev10029835m.g Citrus clementina HOM05D005123 ORTHO05D006532 2.5e-13 78.6 68 55.9
Gorai.004G247500 Gossypium raimondii HOM05D005123 ORTHO05D006532 2.5e-13 78.6 89 50.6
Glyma.03G247900 Glycine max HOM05D005123 ORTHO05D006532 5.5e-13 77.4 64 60.9
Gohir.D08G233000 Gossypium hirsutum HOM05D005123 ORTHO05D006532 9.4e-13 76.6 89 49.4
AagrBONN_evm.TU.Sc2ySwM_228.1429 Anthoceros agrestis HOM05D005123 ORTHO05D006532 1.6e-12 75.9 68 58.8
Pp3c3_15330 Physcomitrium patens HOM05D005123 ORTHO05D006532 1.0e-11 73.2 68 52.9
SMO367G1262 Selaginella moellendorffii HOM05D005123 ORTHO05D006532 6.3e-09 63.9 68 48.5
MELO3C004395.2 Cucumis melo HOM05D005123 ORTHO05D006532 7.0e-08 60.5 33 75.8
Cre03.g207150 Chlamydomonas reinhardtii HOM05D005123 ORTHO05D006532 9.1e-08 60.1 66 45.5
ClCG02G016790 Citrullus lanatus HOM05D005123 ORTHO05D006532 1.6e-07 59.3 32 78.1
SEGI_30682 Sequoiadendron giganteum HOM05D005123 ORTHO05D006532 1.0e-06 56.6 33 78.8


User provided reference genes

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