Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 8.4e-257 889.8 437 100.0
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 5.0e-241 837.4 437 93.8
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 5.7e-229 797.3 437 88.6
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 8.5e-225 783.5 437 87.2
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 6.1e-223 777.3 437 86.7
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 6.1e-223 777.3 437 86.5
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 6.3e-220 767.3 439 85.9
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 2.4e-187 659.1 447 72.5
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 3.9e-185 651.7 447 71.6
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 3.3e-184 648.7 441 71.9
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 5.8e-181 637.9 441 70.3
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 1.3e-180 636.7 445 71.0
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.4e-179 632.5 441 70.5
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 5.4e-179 631.3 439 70.4
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 1.3e-177 626.7 448 69.2
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 8.6e-177 624.0 448 71.2
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 1.2e-175 620.2 440 70.9
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 1.2e-175 620.2 442 69.7
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 4.7e-175 618.2 451 69.4
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 4.0e-174 615.1 447 69.1
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 1.5e-173 613.2 447 69.6
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 1.5e-173 613.2 444 69.4
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 7.6e-173 610.9 443 68.6
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 1.1e-171 607.1 447 68.9
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 1.1e-171 607.1 445 66.7
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 1.2e-170 603.6 446 69.1
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 6.0e-170 601.3 447 68.2
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 7.8e-170 600.9 441 68.0
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 7.8e-170 600.9 446 66.8
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 7.8e-170 600.9 440 67.5
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 1.0e-169 600.5 444 66.4
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 1.7e-169 599.7 443 67.9
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 2.3e-169 599.4 445 68.1
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 1.6e-167 593.2 447 66.4
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 2.8e-167 592.4 448 66.3
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 2.8e-167 592.4 444 67.1
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 6.9e-166 587.8 436 68.6
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 5.8e-165 584.7 434 66.6
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 9.9e-165 583.9 447 64.7
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 9.9e-165 583.9 448 66.3
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 1.7e-164 583.2 444 65.5
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 6.4e-164 581.3 448 66.1
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 3.2e-163 578.9 442 65.6
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 4.2e-163 578.6 444 65.3
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 2.1e-162 576.2 449 64.8
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 2.7e-162 575.9 432 67.1
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 6.0e-162 574.7 435 66.7
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 1.7e-161 573.2 426 66.2
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 2.3e-161 572.8 447 64.2
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 2.3e-161 572.8 429 67.1
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 5.1e-161 571.6 435 66.4
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.3e-160 568.9 451 63.6
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 9.6e-160 567.4 444 65.1
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 2.1e-159 566.2 434 63.6
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 4.8e-159 565.1 444 64.9
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 4.8e-159 565.1 434 62.9
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 8.1e-159 564.3 436 63.3
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.8e-158 563.1 451 63.0
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.4e-158 562.8 444 64.2
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 4.0e-158 562.0 435 63.4
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 6.9e-158 561.2 410 67.3
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 9.0e-158 560.8 430 64.7
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 9.0e-158 560.8 431 64.3
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 9.0e-158 560.8 434 63.6
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 9.0e-158 560.8 444 62.6
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 1.2e-157 560.5 430 64.7
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 7.6e-157 557.8 440 63.6
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 1.7e-156 556.6 434 62.4
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 2.9e-156 555.8 435 64.6
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 4.9e-156 555.1 411 68.6
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 1.1e-155 553.9 422 63.0
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 1.9e-155 553.1 408 66.9
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 2.4e-155 552.7 441 63.7
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 2.4e-155 552.7 441 63.7
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 1.0e-153 547.4 399 68.7
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 1.3e-153 547.0 379 68.6
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 8.7e-153 544.3 430 63.3
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 1.1e-152 543.9 425 64.9
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 7.4e-152 541.2 413 64.2
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 4.8e-151 538.5 441 62.1
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 5.3e-150 535.0 423 62.6
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 9.0e-150 534.3 459 61.2
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.6e-149 532.7 432 64.1
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.6e-149 532.7 432 64.1
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 1.7e-148 530.0 430 61.6
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 2.9e-148 529.3 340 74.4
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 3.8e-148 528.9 452 60.6
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 6.4e-148 528.1 402 65.2
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 1.1e-147 527.3 455 58.7
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 1.4e-147 526.9 440 61.8
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 1.6e-146 523.5 433 61.2
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 6.0e-146 521.5 425 62.6
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 1.3e-145 520.4 342 71.3
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 3.0e-145 519.2 441 61.5
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 4.3e-144 515.4 431 59.9
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 9.6e-144 514.2 435 61.8
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 2.8e-143 512.7 445 60.7
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 8.2e-143 511.1 433 61.9
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 9.0e-142 507.7 434 61.3
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 5.8e-141 505.0 441 60.1
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 1.0e-140 504.2 435 58.4
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 1.3e-140 503.8 441 60.3
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 2.2e-140 503.1 374 63.4
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 2.9e-140 502.7 437 60.2
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 3.8e-140 502.3 438 60.0
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 8.4e-140 501.1 423 62.4
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 4.2e-139 498.8 438 61.2
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 7.1e-139 498.0 446 58.7
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 7.9e-138 494.6 372 62.9
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 3.0e-137 492.7 441 60.1
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 5.1e-137 491.9 446 58.1
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 5.1e-137 491.9 437 56.1
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 8.7e-137 491.1 438 59.6
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 8.7e-137 491.1 350 66.6
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 1.1e-136 490.7 429 61.1
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 1.9e-136 490.0 430 61.4
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 1.9e-136 490.0 430 61.4
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 4.8e-135 485.3 437 55.6
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 1.4e-134 483.8 426 60.3
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 5.9e-133 478.4 361 66.2
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 5.9e-133 478.4 350 65.7
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 1.7e-132 476.9 407 57.2
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 6.3e-127 458.4 350 64.3
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 6.9e-126 454.9 438 56.6
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 7.2e-123 444.9 319 66.1
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 1.4e-118 430.6 323 62.8
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 1.3e-108 397.5 343 61.2
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 8.8e-105 384.8 275 66.2
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 8.8e-105 384.8 275 66.2
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 4.4e-104 382.5 377 55.2
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.4e-94 350.9 372 51.1
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 2.0e-93 347.1 376 49.5
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 2.5e-75 287.0 233 59.7
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 3.0e-68 263.5 194 64.4
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 3.3e-67 260.0 325 48.3
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 4.9e-63 246.1 244 54.1
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 3.5e-61 240.0 164 70.1
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 8.6e-60 235.3 160 68.1
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 6.4e-55 219.2 257 49.8
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 5.8e-40 169.5 107 72.9
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 1.3e-39 168.3 151 55.0
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 7.1e-30 136.0 138 53.6
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 1.9e-27 127.9 98 58.2
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 2.8e-26 124.0 110 60.9
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 3.1e-25 120.6 111 58.6
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 3.7e-10 70.5 52 59.6
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 4.1e-09 67.0 61 54.1
Sp1g39180 Schrenkiella parvula HOM05D000076 ORTHO05D006651 2.2e-07 61.2 332 21.7
Hund00540 Selenicereus undatus HOM05D000076 ORTHO05D006651 2.5e-06 57.8 332 20.5
Lalb_Chr05g0216351 Lupinus albus HOM05D000076 ORTHO05D003143 5.5e-06 56.6 217 24.9
Dinv21010 Davidia involucrata HOM05D000076 ORTHO05D001377 7.2e-06 56.2 332 21.7


User provided reference genes

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