Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.6e-92 342.8 180 100.0
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.3e-89 333.2 180 97.8
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.4e-88 328.9 180 97.8
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 1.1e-77 293.5 190 84.7
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 1.1e-77 293.5 190 84.7
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 6.3e-73 277.7 185 81.6
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.3e-67 259.2 180 80.6
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 5.3e-64 248.1 185 75.1
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 1.3e-62 243.4 179 77.1
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 2.2e-62 242.7 180 75.6
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 6.5e-62 241.1 178 76.4
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 4.2e-61 238.4 180 76.7
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 4.2e-61 238.4 176 74.4
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 7.2e-61 237.7 183 74.9
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 7.2e-61 237.7 181 74.0
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 9.4e-61 237.3 182 74.2
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 9.4e-61 237.3 180 75.6
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 4.6e-60 235.0 179 72.6
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 6.1e-60 234.6 176 72.7
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 6.1e-60 234.6 186 70.4
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 1.0e-59 233.8 176 73.3
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 8.8e-59 230.7 175 73.7
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 1.5e-58 229.9 180 71.1
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 2.0e-58 229.6 182 71.4
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 2.0e-58 229.6 187 71.1
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 2.0e-58 229.6 175 72.0
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 2.6e-58 229.2 178 73.0
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 2.6e-58 229.2 178 73.0
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 4.4e-58 228.4 177 71.2
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 4.4e-58 228.4 192 65.6
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 5.7e-58 228.0 175 72.6
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 7.4e-58 227.6 181 72.4
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 2.8e-57 225.7 172 74.4
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 6.3e-57 224.6 177 70.6
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 1.4e-56 223.4 180 70.6
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 5.3e-56 221.5 176 69.9
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 9.1e-56 220.7 175 68.0
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 9.1e-56 220.7 179 68.7
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 9.1e-56 220.7 180 69.4
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 1.5e-55 219.9 204 62.7
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 2.0e-55 219.5 175 70.9
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 3.4e-55 218.8 179 67.0
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 3.4e-55 218.8 179 67.0
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 3.4e-55 218.8 199 62.3
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 4.5e-55 218.4 175 69.7
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 5.9e-55 218.0 192 68.8
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 1.0e-54 217.2 180 67.2
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 1.0e-54 217.2 180 67.2
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 1.0e-54 217.2 175 66.9
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 1.3e-54 216.9 179 68.2
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 1.7e-54 216.5 175 67.4
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 2.2e-54 216.1 176 68.2
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 3.8e-54 215.3 188 62.8
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 5.0e-54 214.9 182 65.9
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 6.5e-54 214.5 142 83.8
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 1.1e-53 213.8 192 62.5
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 1.1e-53 213.8 178 67.4
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 1.4e-53 213.4 174 66.1
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 1.4e-53 213.4 180 68.3
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 1.4e-53 213.4 180 68.3
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 1.4e-53 213.4 173 67.1
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.9e-53 213.0 174 66.7
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 1.9e-53 213.0 178 66.3
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 3.2e-53 212.2 179 65.4
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 3.2e-53 212.2 180 65.0
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 3.2e-53 212.2 132 83.3
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 3.2e-53 212.2 175 68.6
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 4.2e-53 211.8 179 63.1
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 5.5e-53 211.5 181 66.9
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 7.2e-53 211.1 176 66.5
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 9.4e-53 210.7 180 67.8
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 9.4e-53 210.7 188 65.4
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 1.2e-52 210.3 176 67.0
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 1.6e-52 209.9 179 63.7
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.6e-52 208.8 180 65.0
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 4.7e-52 208.4 176 65.9
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 6.1e-52 208.0 177 65.5
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 6.1e-52 208.0 180 64.4
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 6.1e-52 208.0 181 65.2
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 1.0e-51 207.2 177 66.1
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.0e-51 207.2 182 62.6
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.0e-51 207.2 176 67.0
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.0e-51 207.2 201 61.7
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 1.4e-51 206.8 174 65.5
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 2.3e-51 206.1 179 65.9
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 3.0e-51 205.7 178 64.6
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 3.9e-51 205.3 176 65.9
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 8.8e-51 204.1 177 63.8
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 1.5e-50 203.4 193 59.6
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 2.0e-50 203.0 181 64.1
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 4.4e-50 201.8 175 64.0
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 5.7e-50 201.4 182 63.2
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 7.4e-50 201.1 187 61.5
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 1.3e-49 200.3 178 62.9
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 2.2e-49 199.5 154 74.0
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 6.3e-49 198.0 201 55.2
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.8e-48 196.4 177 64.4
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.8e-48 196.4 177 64.4
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 2.4e-48 196.1 158 74.7
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 5.3e-48 194.9 179 64.2
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 9.1e-48 194.1 187 61.0
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 9.1e-48 194.1 184 60.3
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 2.0e-47 193.0 179 63.7
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 7.7e-47 191.0 133 74.4
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 1.3e-46 190.3 178 57.9
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 1.7e-46 189.9 174 62.6
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 2.9e-46 189.1 174 60.9
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 2.9e-46 189.1 174 60.9
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 5.0e-46 188.3 195 57.9
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 1.1e-45 187.2 177 61.0
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 2.5e-45 186.0 177 60.5
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.6e-44 183.3 120 76.7
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 8.0e-44 181.0 155 68.4
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 3.0e-43 179.1 173 60.1
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 1.4e-40 170.2 102 83.3
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 2.7e-39 166.0 177 58.8
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 2.7e-39 166.0 135 64.4
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 1.6e-36 156.8 146 63.0
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 2.7e-36 156.0 188 47.9
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 3.6e-36 155.6 91 84.6
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 9.8e-34 147.5 188 46.3
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 3.7e-33 145.6 115 65.2
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 2.4e-32 142.9 102 69.6
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 1.5e-29 133.7 112 61.6
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 3.2e-29 132.5 103 64.1
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 1.2e-28 130.6 101 67.3
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 2.8e-28 129.4 101 66.3
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 3.6e-28 129.0 125 65.6
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 8.0e-28 127.9 126 54.8
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 2.3e-27 126.3 85 76.5
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 5.2e-27 125.2 120 55.0
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 2.0e-26 123.2 102 64.7
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 5.7e-26 121.7 103 63.1
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 1.4e-24 117.1 130 55.4
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 2.0e-23 113.2 110 52.7
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.3e-22 110.5 88 72.7
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 1.3e-22 110.5 103 55.3
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 1.7e-22 110.2 115 54.8
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 5.0e-22 108.6 103 57.3
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 8.6e-22 107.8 110 51.8
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.9e-21 106.7 177 43.5
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 3.3e-21 105.9 98 55.1
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 3.6e-20 102.4 82 61.0
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 5.2e-19 98.6 73 64.4
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 5.7e-18 95.1 64 76.6
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.9e-17 92.8 67 71.6
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 6.4e-17 91.7 110 43.6
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 6.4e-17 91.7 98 45.9
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 1.1e-16 90.9 101 50.5
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 5.4e-16 88.6 94 51.1
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 5.4e-16 88.6 124 46.8
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 2.3e-11 73.2 87 39.1
CAN.G1581.1 Capsicum annuum HOM05D004626 ORTHO05D005185 4.4e-10 68.9 56 71.4
Nitab4.5_0000104g0020 Nicotiana tabacum HOM05D034732 ORTHO05D285139 1.0e-06 57.8 54 64.8


User provided reference genes

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