Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.0e-128 463.4 231 100.0
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.8e-86 322.4 176 90.3
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 3.4e-55 219.2 252 51.6
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 3.7e-54 215.7 243 52.7
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 1.9e-53 213.4 169 69.8
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.6e-52 210.3 173 64.2
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 2.7e-52 209.5 242 52.1
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 2.3e-51 206.5 256 50.8
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 5.1e-51 205.3 254 50.8
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 8.6e-51 204.5 243 51.4
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 1.6e-49 200.3 173 61.8
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 3.6e-49 199.1 287 45.3
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 6.8e-48 194.9 242 49.2
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 7.6e-47 191.4 173 59.5
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 9.9e-39 164.5 288 41.7
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 3.2e-37 159.5 262 45.4
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 9.3e-37 157.9 259 41.3
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 2.4e-32 143.3 253 42.3
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 9.0e-32 141.4 234 41.0
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 2.0e-31 140.2 254 42.5
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 8.4e-30 134.8 136 55.9
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 8.4e-30 134.8 129 58.1
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 3.2e-29 132.9 124 54.0
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 3.5e-28 129.4 142 50.7
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 4.6e-28 129.0 125 56.0
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 7.9e-28 128.3 131 52.7
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 6.7e-27 125.2 173 44.5
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 8.7e-27 124.8 121 58.7
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 8.7e-27 124.8 121 58.7
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 1.1e-26 124.4 121 56.2
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 2.5e-26 123.2 278 36.3
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.5e-26 123.2 128 53.1
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 3.3e-26 122.9 124 55.6
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 4.3e-26 122.5 135 56.3
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 4.3e-26 122.5 124 55.6
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 4.3e-26 122.5 221 41.2
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 5.6e-26 122.1 255 37.3
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 2.1e-25 120.2 122 52.5
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 2.8e-25 119.8 126 53.2
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 3.7e-25 119.4 129 51.9
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 4.8e-25 119.0 121 52.9
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 6.2e-25 118.6 125 55.2
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 8.1e-25 118.2 124 54.0
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 8.1e-25 118.2 211 37.4
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 1.1e-24 117.9 129 51.2
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 1.4e-24 117.5 124 52.4
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 1.8e-24 117.1 176 42.6
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 2.4e-24 116.7 132 51.5
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 2.4e-24 116.7 233 39.9
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 2.4e-24 116.7 121 52.9
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.4e-24 116.7 190 42.6
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 4.0e-24 115.9 184 44.0
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 5.3e-24 115.5 114 55.3
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 6.9e-24 115.2 124 51.6
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 6.9e-24 115.2 119 53.8
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 9.0e-24 114.8 215 39.1
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 9.0e-24 114.8 125 50.4
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 1.2e-23 114.4 122 51.6
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 2.6e-23 113.2 197 40.1
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 5.8e-23 112.1 123 51.2
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 1.3e-22 110.9 121 52.1
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 1.7e-22 110.5 131 46.6
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 2.2e-22 110.2 134 48.5
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 3.8e-22 109.4 131 45.8
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 3.8e-22 109.4 131 45.8
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 3.8e-22 109.4 131 45.8
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 4.9e-22 109.0 126 50.0
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 6.4e-22 108.6 141 45.4
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 6.4e-22 108.6 140 48.6
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 6.4e-22 108.6 140 49.3
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 6.4e-22 108.6 307 33.6
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 1.4e-21 107.5 183 39.9
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 2.5e-21 106.7 131 45.0
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 3.2e-21 106.3 134 43.3
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 4.2e-21 105.9 121 51.2
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 1.2e-20 104.4 265 32.1
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 1.2e-20 104.4 121 49.6
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 2.1e-20 103.6 132 43.9
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 2.1e-20 103.6 137 44.5
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.7e-20 103.2 134 48.5
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 2.7e-20 103.2 185 42.2
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 4.6e-20 102.4 140 46.4
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 6.0e-20 102.1 151 42.4
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 1.0e-19 101.3 131 47.3
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 1.0e-19 101.3 126 50.0
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 1.3e-19 100.9 133 48.1
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 1.3e-19 100.9 121 47.1
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 3.0e-19 99.8 129 49.6
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 3.9e-19 99.4 126 48.4
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 1.1e-18 97.8 123 47.2
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 1.1e-18 97.8 123 47.2
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 3.3e-18 96.3 187 36.4
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 5.6e-18 95.5 226 33.6
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 9.6e-18 94.7 121 47.1
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 9.6e-18 94.7 129 46.5
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 3.7e-17 92.8 131 42.0
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 4.8e-17 92.4 144 43.1
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 6.2e-17 92.0 155 36.8
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 1.1e-16 91.3 167 39.5
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 1.1e-16 91.3 167 39.5
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 1.1e-16 91.3 167 39.5
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 1.8e-16 90.5 275 31.6
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 3.1e-16 89.7 207 37.2
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 3.1e-16 89.7 187 35.3
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 5.3e-16 89.0 215 33.0
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 6.9e-16 88.6 167 40.1
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 6.9e-16 88.6 166 39.2
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 2.0e-15 87.0 129 40.3
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 2.0e-15 87.0 125 42.4
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 2.0e-15 87.0 164 37.2
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 1.7e-14 84.0 128 39.8
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 2.2e-14 83.6 128 39.8
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 4.9e-14 82.4 133 39.8
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 6.5e-14 82.0 132 42.4
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 8.4e-14 81.6 171 36.3
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 2.5e-13 80.1 133 36.8
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 3.2e-13 79.7 113 46.0
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 4.2e-13 79.3 229 31.0
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 4.2e-13 79.3 137 38.7
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 9.3e-13 78.2 132 40.2
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 2.7e-12 76.6 64 62.5
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 6.0e-12 75.5 213 32.9
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 2.3e-11 73.6 145 37.9
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 3.9e-11 72.8 112 41.1
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.3e-09 67.8 151 38.4
MELO3C021078.2 Cucumis melo HOM05D005417 ORTHO05D002591 4.8e-09 65.9 129 34.1
ClCG09G008640 Citrullus lanatus HOM05D005417 ORTHO05D002591 8.2e-09 65.1 205 29.3
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 9.0e-08 61.6 187 30.5
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 5.9e-07 58.9 142 31.0
Sed0007907 Sechium edule HOM05D005417 ORTHO05D002591 3.8e-06 56.2 105 38.1
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 5.0e-06 55.8 131 32.1
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 6.5e-06 55.5 49 53.1
CDE05G3071 Ceratophyllum demersum HOM05D000186 ORTHO05D002329 8.5e-06 55.1 109 33.9


User provided reference genes

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