Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 3.3e-148 528.5 293 100.0
Nitab4.5_0002370g0010 Nicotiana tabacum HOM05D009304 ORTHO05D003109 9.4e-111 404.1 294 82.0
Sopen07g028460 Solanum pennellii HOM05D009304 ORTHO05D003109 1.8e-98 363.2 296 77.4
Solyc07g054560.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 2.4e-98 362.8 295 76.6
PGSC0003DMG400018324 Solanum tuberosum HOM05D009304 ORTHO05D003109 3.5e-97 359.0 296 76.4
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 5.8e-76 288.5 301 66.1
Solyc08g068460.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 2.1e-65 253.4 296 62.2
Solyc01g106180.3 Solanum lycopersicum HOM05D009304 ORTHO05D003109 1.7e-59 233.8 170 77.6
CAN.G996.13 Capsicum annuum HOM05D009304 ORTHO05D003109 2.8e-54 216.5 301 56.1
Sopen12g021050 Solanum pennellii HOM05D009304 ORTHO05D003109 4.4e-52 209.1 170 72.9
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 3.2e-50 203.0 318 47.8
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 1.0e-40 171.4 321 43.9
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 1.3e-35 154.5 313 44.7
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 1.1e-34 151.4 316 44.3
Dinv23691 Davidia involucrata HOM05D009304 ORTHO05D003109 1.6e-33 147.5 283 44.5
Oeu025512.1 Olea europaea HOM05D009304 ORTHO05D003109 3.4e-28 129.8 297 40.1
Solyc09g082960.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 5.8e-28 129.0 80 86.2
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 1.7e-27 127.5 297 44.1
Hma1.2p1_0875F.1_g231510 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 1.7e-27 127.5 322 40.7
Solyc11g043180.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 6.5e-27 125.6 100 72.0
Solyc08g045770.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 1.4e-26 124.4 100 73.0
Lsat_1_v5_gn_4_70241 Lactuca sativa HOM05D009304 ORTHO05D003109 5.5e-26 122.5 316 38.6
Solyc04g007740.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 2.7e-25 120.2 100 71.0
Dinv01395 Davidia involucrata HOM05D009304 ORTHO05D003109 1.3e-24 117.9 267 43.8
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 2.2e-22 110.5 314 38.5
Actinidia09882 Actinidia chinensis HOM05D009304 ORTHO05D003109 3.1e-21 106.7 270 40.0
Hma1.2p1_0280F.1_g112760 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 2.6e-20 103.6 189 49.7
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 2.6e-20 103.6 317 39.1
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 1.3e-19 101.3 314 37.3
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 3.8e-19 99.8 320 35.9
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 9.4e-18 95.1 313 37.7
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 4.6e-17 92.8 268 38.8
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 7.9e-17 92.0 199 44.2
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 1.4e-16 91.3 312 38.1
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 1.4e-16 91.3 312 38.1
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 2.3e-16 90.5 274 39.1
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 3.0e-16 90.1 308 35.7
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 3.0e-16 90.1 311 37.3
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 3.9e-16 89.7 336 36.3
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 5.1e-16 89.4 350 35.7
Psat7g199680 Pisum sativum HOM05D010177 ORTHO05D003109 5.1e-16 89.4 339 34.8
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 6.7e-16 89.0 294 36.1
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 8.8e-16 88.6 310 39.7
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 8.8e-16 88.6 310 39.7
FvH4_6g44980 Fragaria vesca HOM05D010652 ORTHO05D003109 1.1e-15 88.2 357 32.2
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 1.1e-15 88.2 303 34.3
Eucgr.A01789 Eucalyptus grandis HOM05D004441 ORTHO05D003109 1.5e-15 87.8 338 33.4
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 3.3e-15 86.7 300 34.0
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 3.3e-15 86.7 305 37.7
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 3.3e-15 86.7 332 35.2
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 5.7e-15 85.9 321 38.6
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 1.7e-14 84.3 329 33.7
Ca_20682_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 2.2e-14 84.0 335 34.6
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 2.2e-14 84.0 320 38.4
Lalb_Chr19g0135401 Lupinus albus HOM05D010177 ORTHO05D003109 2.2e-14 84.0 335 34.0
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 2.8e-14 83.6 305 38.0
PGR042G0321 Punica granatum HOM05D004441 ORTHO05D003109 6.3e-14 82.4 334 35.0
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 8.2e-14 82.0 302 34.1
ECA234G0694 Erigeron canadensis HOM05D009304 ORTHO05D003109 1.1e-13 81.6 310 39.7
FAN09G1981 Fragaria x ananassa HOM05D010652 ORTHO05D003109 1.1e-13 81.6 358 32.1
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 1.1e-13 81.6 311 33.8
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.4e-13 81.3 309 34.3
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 1.8e-13 80.9 321 33.3
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 1.8e-13 80.9 318 30.8
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 1.8e-13 80.9 314 34.7
Lsat_1_v5_gn_8_132261 Lactuca sativa HOM05D009304 ORTHO05D003109 9.1e-13 78.6 291 34.7
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 9.1e-13 78.6 332 31.3
Glyma.13G184100 Glycine max HOM05D004441 ORTHO05D003109 2.6e-12 77.0 298 31.5
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 3.4e-12 76.6 315 32.7
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 3.4e-12 76.6 306 35.3
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 7.7e-12 75.5 304 34.2
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 7.7e-12 75.5 301 35.9
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 1.0e-11 75.1 328 35.4
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.0e-11 75.1 328 33.5
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 1.3e-11 74.7 300 35.3
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 1.3e-11 74.7 329 35.9
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 2.2e-11 73.9 340 34.4
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 3.8e-11 73.2 301 32.9
FAN14G1127 Fragaria x ananassa HOM05D010652 ORTHO05D003109 6.5e-11 72.4 354 29.9
Oeu026007.1 Olea europaea HOM05D004441 ORTHO05D003109 6.5e-11 72.4 321 32.7
arahy.Tifrunner.gnm1.ann1.48X98F Arachis hypogaea HOM05D010177 ORTHO05D003109 8.5e-11 72.0 309 31.7
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 1.1e-10 71.6 328 33.8
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 1.4e-10 71.2 301 32.9
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.9e-10 70.9 312 34.6
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 1.9e-10 70.9 312 34.6
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 3.2e-10 70.1 272 35.7
Migut.M01162 Erythranthe guttata HOM05D004441 ORTHO05D003109 3.2e-10 70.1 281 35.2
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 3.2e-10 70.1 328 32.3
MSTRG.14193 Avicennia marina HOM05D033380 ORTHO05D026975 5.5e-10 69.3 293 32.1
ClCG00G003130 Citrullus lanatus HOM05D004441 ORTHO05D003109 5.5e-10 69.3 305 32.5
ClCG01G022730 Citrullus lanatus HOM05D004441 ORTHO05D003109 5.5e-10 69.3 305 32.5
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 5.5e-10 69.3 311 35.4
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 5.5e-10 69.3 354 33.1
Glyma.12G108500 Glycine max HOM05D010177 ORTHO05D003109 7.2e-10 68.9 331 32.0
MELO3C007307.2 Cucumis melo HOM05D004441 ORTHO05D003109 1.2e-09 68.2 313 31.9
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 1.6e-09 67.8 325 32.0
CsaV3_6G049880 Cucumis sativus L. HOM05D004441 ORTHO05D003109 2.1e-09 67.4 316 32.0
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 2.1e-09 67.4 303 31.0
Thhalv10026095m.g Eutrema salsugineum HOM05D012054 ORTHO05D013946 2.1e-09 67.4 304 32.2
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 3.6e-09 66.6 307 32.9
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 4.7e-09 66.2 328 30.5
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 4.7e-09 66.2 301 32.6
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 6.1e-09 65.9 334 32.6
Dinv39787 Davidia involucrata HOM05D004441 ORTHO05D003109 6.1e-09 65.9 315 32.7
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 7.9e-09 65.5 323 33.4
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 1.0e-08 65.1 307 34.5
Glyma.U031310 Glycine max HOM05D010177 ORTHO05D003109 1.4e-08 64.7 329 31.0
CANSAT64G2194 Cannabis sativa HOM05D010652 ORTHO05D003109 1.8e-08 64.3 341 31.1
Lsat_1_v5_gn_7_20000 Lactuca sativa HOM05D004441 ORTHO05D003109 2.3e-08 63.9 309 32.4
Cfa014564 Carpinus fangiana HOM05D010652 ORTHO05D003109 3.0e-08 63.5 316 29.7
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 3.0e-08 63.5 322 31.4
Lj3g0011122 Lotus japonicus HOM05D010177 ORTHO05D003109 3.0e-08 63.5 336 31.2
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 3.0e-08 63.5 322 33.5
Sabra05G0071200 Salix brachista HOM05D010652 ORTHO05D003109 3.0e-08 63.5 316 32.0
FAN05G0655 Fragaria x ananassa HOM05D010652 ORTHO05D003109 5.1e-08 62.8 301 31.2
FAN05G4761 Fragaria x ananassa HOM05D010652 ORTHO05D003109 5.1e-08 62.8 301 31.2
Manes.13G149800 Manihot esculenta HOM05D010652 ORTHO05D003109 5.1e-08 62.8 321 34.0
Phvul.002G224300 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 5.1e-08 62.8 314 30.3
VMungo0251G2507 Vigna mungo HOM05D004441 ORTHO05D003109 5.1e-08 62.8 307 30.6
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 6.7e-08 62.4 193 37.3
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 8.8e-08 62.0 302 29.5
AL7G24420 Arabidopsis lyrata HOM05D012054 ORTHO05D013946 1.1e-07 61.6 309 28.5
Migut.H01045 Erythranthe guttata HOM05D009304 ORTHO05D026975 1.1e-07 61.6 300 31.7
VMungo1080G0072 Vigna mungo HOM05D010177 ORTHO05D003109 1.1e-07 61.6 296 33.4
Lalb_Chr14g0366711 Lupinus albus HOM05D010177 ORTHO05D003109 1.5e-07 61.2 313 28.8
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 2.0e-07 60.8 326 32.2
Cfa000385 Carpinus fangiana HOM05D004441 ORTHO05D003109 2.6e-07 60.5 332 31.0
Rhsim04G0066200 Rhododendron simsii HOM05D009304 ORTHO05D003109 2.6e-07 60.5 320 32.8
Sed0005410 Sechium edule HOM05D002331 ORTHO05D002624 2.6e-07 60.5 295 32.2
ClCG02G001220 Citrullus lanatus HOM05D032711 ORTHO05D003109 3.3e-07 60.1 299 30.4
Haze_06542 Corylus avellana HOM05D004441 ORTHO05D003109 5.7e-07 59.3 344 29.7
CsaV3_7G004220 Cucumis sativus L. HOM05D032711 ORTHO05D003109 5.7e-07 59.3 303 29.7
Glyma.13G299800 Glycine max HOM05D010177 ORTHO05D003109 5.7e-07 59.3 311 32.2
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 7.4e-07 58.9 331 32.6
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 1.3e-06 58.2 271 29.9
Nn1g06687 Nelumbo nucifera HOM05D004441 ORTHO05D003109 1.7e-06 57.8 264 33.3
Ah.09g235850 Amaranthus hybridus HOM05D004441 ORTHO05D003109 2.2e-06 57.4 322 33.9
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 2.2e-06 57.4 322 32.6
Oeu029188.1 Olea europaea HOM05D004441 ORTHO05D003109 3.7e-06 56.6 313 31.0
Lalb_Chr18g0059831 Lupinus albus HOM05D004441 ORTHO05D003109 4.8e-06 56.2 298 33.6
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 6.3e-06 55.8 303 29.4
Sopen02g023590 Solanum pennellii HOM05D004441 ORTHO05D003109 6.3e-06 55.8 307 34.2
ECA234G2831 Erigeron canadensis HOM05D004441 ORTHO05D003109 8.2e-06 55.5 318 29.9


User provided reference genes

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