Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.7e-61 238.4 115 100.0
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.0e-49 198.0 117 83.8
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 3.1e-33 145.2 122 68.9
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.2e-31 139.0 122 64.8
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 3.8e-31 138.3 126 63.5
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 8.4e-31 137.1 125 61.6
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.2e-29 133.3 118 60.2
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.0e-28 128.6 119 62.2
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 6.7e-28 127.5 117 59.8
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 4.8e-26 121.3 126 54.0
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.1e-25 120.2 127 52.0
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.4e-25 119.8 114 60.5
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.8e-25 119.4 128 50.8
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 3.1e-25 118.6 118 56.8
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 4.1e-25 118.2 124 51.6
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 9.0e-25 117.1 119 54.6
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 2.0e-24 115.9 122 53.3
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 5.9e-24 114.4 125 52.0
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.0e-23 113.6 121 52.1
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 2.2e-23 112.5 121 51.2
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 2.9e-23 112.1 129 50.4
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 3.8e-23 111.7 122 49.2
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 6.5e-23 110.9 126 48.4
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 1.9e-22 109.4 119 52.1
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 1.9e-22 109.4 122 50.8
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 9.3e-22 107.1 124 50.0
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 9.3e-22 107.1 125 47.2
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.2e-21 106.7 125 48.8
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 7.9e-21 104.0 126 48.4
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.0e-20 103.6 122 49.2
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 1.0e-20 103.6 116 49.1
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.8e-20 102.8 119 49.6
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.3e-20 102.4 120 50.0
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 2.3e-20 102.4 118 50.0
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 3.3e-19 98.6 124 45.2
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 4.3e-19 98.2 117 46.2
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 4.3e-19 98.2 124 41.1
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 4.3e-19 98.2 123 48.0
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 9.7e-19 97.1 121 44.6
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 2.2e-18 95.9 109 45.9
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 2.8e-18 95.5 87 55.2
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 2.8e-18 95.5 87 55.2
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 2.8e-18 95.5 91 57.1
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 6.3e-18 94.4 118 45.8
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 8.2e-18 94.0 120 45.8
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 8.2e-18 94.0 123 44.7
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 8.2e-18 94.0 89 53.9
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 1.1e-17 93.6 132 42.4
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 1.4e-17 93.2 126 43.7
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 1.4e-17 93.2 127 40.9
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.4e-17 93.2 124 40.3
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 1.4e-17 93.2 117 47.9
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 1.8e-17 92.8 120 42.5
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 1.8e-17 92.8 83 56.6
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 2.4e-17 92.4 113 47.8
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 2.4e-17 92.4 117 43.6
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 5.3e-17 91.3 116 44.8
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 6.9e-17 90.9 129 42.6
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 9.0e-17 90.5 126 45.2
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 9.0e-17 90.5 117 44.4
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.2e-16 90.1 121 42.1
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.2e-16 90.1 133 43.6
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.5e-16 89.7 127 44.9
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 1.5e-16 89.7 125 44.8
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.5e-16 89.7 125 44.0
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.5e-16 89.7 83 55.4
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 2.0e-16 89.4 120 42.5
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 2.6e-16 89.0 117 44.4
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.5e-16 88.2 124 42.7
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 5.9e-16 87.8 127 41.7
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 7.7e-16 87.4 115 44.3
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 7.7e-16 87.4 125 44.0
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 7.7e-16 87.4 122 40.2
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 1.0e-15 87.0 118 43.2
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 1.3e-15 86.7 109 44.0
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 1.3e-15 86.7 127 40.9
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.7e-15 86.3 123 43.1
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 2.9e-15 85.5 123 43.1
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 3.8e-15 85.1 125 41.6
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 3.8e-15 85.1 123 43.9
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 3.8e-15 85.1 80 52.5
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 5.0e-15 84.7 115 43.5
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 6.5e-15 84.3 129 38.8
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 6.5e-15 84.3 84 54.8
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 8.5e-15 84.0 122 45.1
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 1.4e-14 83.2 124 41.9
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.9e-14 82.8 124 40.3
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.9e-14 82.8 124 40.3
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.9e-14 82.8 124 40.3
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.9e-14 82.8 124 40.3
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 4.2e-14 81.6 124 40.3
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 4.2e-14 81.6 130 39.2
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 4.2e-14 81.6 123 41.5
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 7.2e-14 80.9 89 48.3
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.2e-13 80.1 132 37.1
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 2.1e-13 79.3 113 40.7
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 2.1e-13 79.3 80 47.5
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 2.1e-13 79.3 125 38.4
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 2.7e-13 79.0 126 39.7
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 2.7e-13 79.0 129 41.1
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 2.7e-13 79.0 127 40.2
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 3.6e-13 78.6 111 42.3
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 4.6e-13 78.2 127 40.9
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 4.6e-13 78.2 131 40.5
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 6.1e-13 77.8 125 40.0
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 6.1e-13 77.8 127 37.8
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 6.1e-13 77.8 122 42.6
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 7.9e-13 77.4 83 50.6
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 7.9e-13 77.4 113 39.8
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 1.0e-12 77.0 125 38.4
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 1.0e-12 77.0 121 40.5
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 1.0e-12 77.0 135 37.0
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.0e-12 77.0 126 40.5
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 1.4e-12 76.6 79 45.6
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 1.4e-12 76.6 126 41.3
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.4e-12 76.6 126 40.5
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.4e-12 76.6 126 40.5
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 1.4e-12 76.6 121 41.3
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 1.4e-12 76.6 125 38.4
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 3.0e-12 75.5 128 38.3
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 3.9e-12 75.1 96 46.9
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 3.9e-12 75.1 88 43.2
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 3.9e-12 75.1 117 39.3
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 6.7e-12 74.3 120 39.2
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 6.7e-12 74.3 129 41.1
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 8.8e-12 73.9 109 42.2
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 8.8e-12 73.9 120 35.8
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 1.1e-11 73.6 110 40.9
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.1e-11 73.6 106 37.7
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.1e-11 73.6 86 47.7
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 1.1e-11 73.6 98 48.0
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 1.5e-11 73.2 84 46.4
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 2.0e-11 72.8 106 37.7
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 2.5e-11 72.4 125 37.6
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 2.5e-11 72.4 125 37.6
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 2.5e-11 72.4 130 38.5
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 2.5e-11 72.4 81 44.4
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 3.3e-11 72.0 120 40.0
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 3.3e-11 72.0 113 40.7
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 4.3e-11 71.6 123 40.7
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 5.7e-11 71.2 122 40.2
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 7.4e-11 70.9 113 37.2
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 9.7e-11 70.5 90 43.3
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 9.7e-11 70.5 116 43.1
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 1.3e-10 70.1 93 45.2
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 1.7e-10 69.7 90 42.2
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 1.7e-10 69.7 106 36.8
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 1.7e-10 69.7 92 41.3
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.7e-10 69.7 117 38.5
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 2.2e-10 69.3 110 38.2
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 2.2e-10 69.3 89 44.9
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 2.2e-10 69.3 118 39.0
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 4.8e-10 68.2 92 41.3
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 4.8e-10 68.2 92 41.3
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 4.8e-10 68.2 86 43.0
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 6.3e-10 67.8 94 38.3
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 6.3e-10 67.8 111 36.9
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 6.3e-10 67.8 129 34.1
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 8.2e-10 67.4 107 40.2
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.4e-09 65.9 118 36.4
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 2.4e-09 65.9 75 45.3
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 2.4e-09 65.9 75 45.3
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 3.1e-09 65.5 96 42.7
Nitab4.5_0000750g0030 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.1e-09 65.1 80 46.2
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 4.1e-09 65.1 94 41.5
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 4.1e-09 65.1 76 44.7
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 6.9e-09 64.3 75 46.7
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 6.9e-09 64.3 75 46.7
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 6.9e-09 64.3 75 46.7
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 6.9e-09 64.3 93 38.7
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 6.9e-09 64.3 88 44.3
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 1.5e-08 63.2 90 45.6
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 2.0e-08 62.8 103 35.0
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 3.4e-08 62.0 124 33.9
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 4.5e-08 61.6 80 40.0
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 5.9e-08 61.2 62 45.2
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 5.9e-08 61.2 81 44.4
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 7.7e-08 60.8 88 38.6
HanXRQChr05g0137871 Helianthus annuus HOM05D003592 ORTHO05D029303 1.0e-07 60.5 89 39.3
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 1.3e-07 60.1 80 42.5
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.7e-07 59.7 81 33.3
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 5.0e-07 58.2 88 42.0
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 8.5e-07 57.4 133 36.8
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.1e-06 57.0 79 39.2
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.1e-06 57.0 136 35.3


User provided reference genes

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