Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0003010g0020 Nicotiana tabacum HOM05D004752 ORTHO05D005523 4.1e-44 181.0 93 100.0
Peaxi162Scf00391g00436 Petunia axillaris HOM05D004752 ORTHO05D005523 1.5e-41 172.6 93 92.5
Nitab4.5_0000365g0250 Nicotiana tabacum HOM05D004752 ORTHO05D005523 5.6e-41 170.6 94 95.7
PGSC0003DMG400009277 Solanum tuberosum HOM05D004752 ORTHO05D005523 1.4e-39 166.0 93 90.3
PGSC0003DMG400026069 Solanum tuberosum HOM05D004752 ORTHO05D005523 1.9e-36 155.6 91 86.8
Peaxi162Scf00268g00615 Petunia axillaris HOM05D004752 ORTHO05D005523 1.0e-34 149.8 93 83.9
Nitab4.5_0000303g0280 Nicotiana tabacum HOM05D004752 ORTHO05D005523 1.3e-34 149.4 92 83.7
Nitab4.5_0001082g0040 Nicotiana tabacum HOM05D004752 ORTHO05D005523 1.3e-34 149.4 92 83.7
Solyc06g065180.3 Solanum lycopersicum HOM05D004752 ORTHO05D005523 1.2e-32 142.9 83 84.3
Sopen06g023680 Solanum pennellii HOM05D004752 ORTHO05D005523 1.2e-32 142.9 83 84.3
Atru.chr13.2410 Acer truncatum HOM05D004752 ORTHO05D005523 2.1e-32 142.1 88 78.4
Dinv41721 Davidia involucrata HOM05D004752 ORTHO05D005523 2.0e-30 135.6 94 73.4
Potri.019G081700 Populus trichocarpa HOM05D004752 ORTHO05D005523 2.6e-30 135.2 89 75.3
COL.COLO4_34528 Corchorus olitorius HOM05D004752 ORTHO05D005523 3.4e-30 134.8 94 73.4
Duzib211G0386 Durio zibethinus HOM05D004752 ORTHO05D005523 4.4e-30 134.4 94 72.3
Migut.C01286 Erythranthe guttata HOM05D004752 ORTHO05D005523 4.4e-30 134.4 91 72.5
Lalb_Chr19g0129031 Lupinus albus HOM05D004752 ORTHO05D005523 4.4e-30 134.4 88 75.0
PGR042G3757 Punica granatum HOM05D004752 ORTHO05D005523 7.5e-30 133.7 94 71.3
Gohir.D09G112900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 9.8e-30 133.3 94 69.1
Thecc.08G186100 Theobroma cacao HOM05D004752 ORTHO05D005523 1.3e-29 132.9 94 72.3
Potri.013G110600 Populus trichocarpa HOM05D004752 ORTHO05D005523 2.9e-29 131.7 91 75.8
Ciclev10002954m.g Citrus clementina HOM05D004752 ORTHO05D005523 3.7e-29 131.3 88 72.7
Cc00_g06570 Coffea canephora HOM05D004752 ORTHO05D005523 3.7e-29 131.3 94 70.2
Gohir.A05G250100 Gossypium hirsutum HOM05D004752 ORTHO05D005523 4.9e-29 131.0 92 72.8
Gohir.D05G251900 Gossypium hirsutum HOM05D004752 ORTHO05D005523 4.9e-29 131.0 92 72.8
Gorai.009G263300 Gossypium raimondii HOM05D004752 ORTHO05D005523 4.9e-29 131.0 92 72.8
Gohir.D09G112701 Gossypium hirsutum HOM05D004752 ORTHO05D005523 6.4e-29 130.6 92 68.5
Gohir.D05G253600 Gossypium hirsutum HOM05D004752 ORTHO05D005523 8.3e-29 130.2 92 71.7
Gorai.009G263400 Gossypium raimondii HOM05D004752 ORTHO05D005523 8.3e-29 130.2 92 71.7
TAR381G0821 Trochodendron aralioides HOM05D004752 ORTHO05D005523 8.3e-29 130.2 96 68.8
MSTRG.1541 Avicennia marina HOM05D004752 ORTHO05D005523 1.1e-28 129.8 92 71.7
Gorai.006G130300 Gossypium raimondii HOM05D004752 ORTHO05D005523 1.1e-28 129.8 95 69.5
Lalb_Chr03g0036521 Lupinus albus HOM05D004752 ORTHO05D005523 1.1e-28 129.8 88 71.6
AUR62022705 Chenopodium quinoa HOM05D004752 ORTHO05D005523 1.9e-28 129.0 89 71.9
ClCG09G009960 Citrullus lanatus HOM05D004752 ORTHO05D005523 1.9e-28 129.0 90 72.2
Phvul.007G240400 Phaseolus vulgaris HOM05D004752 ORTHO05D005523 1.9e-28 129.0 92 72.8
DCAR_011527 Daucus carota HOM05D004752 ORTHO05D005523 2.4e-28 128.6 89 70.8
Gohir.A05G250200 Gossypium hirsutum HOM05D004752 ORTHO05D005523 2.4e-28 128.6 92 72.8
Duzib177G0553 Durio zibethinus HOM05D004752 ORTHO05D005523 3.2e-28 128.3 94 69.1
Lj6g0009552 Lotus japonicus HOM05D004752 ORTHO05D005523 3.2e-28 128.3 89 73.0
Actinidia29420 Actinidia chinensis HOM05D004752 ORTHO05D005523 5.4e-28 127.5 94 72.3
Prupe.1G506700 Prunus persica HOM05D004752 ORTHO05D005523 5.4e-28 127.5 88 69.3
Glyma.10G117300 Glycine max HOM05D004752 ORTHO05D005523 7.1e-28 127.1 93 72.0
CSS0011118 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 9.2e-28 126.7 94 70.2
CSS0018537 Camellia sinensis var. sinensis HOM05D004752 ORTHO05D005523 9.2e-28 126.7 94 70.2
CsaV3_2G033590 Cucumis sativus L. HOM05D004752 ORTHO05D005523 1.2e-27 126.3 90 72.2
Sed0006132 Sechium edule HOM05D004752 ORTHO05D005523 1.6e-27 125.9 90 70.0
TAR628G0740 Trochodendron aralioides HOM05D004752 ORTHO05D005523 1.6e-27 125.9 96 66.7
EL10Ac1g00098 Beta vulgaris HOM05D004752 ORTHO05D005523 2.1e-27 125.6 91 70.3
Lalb_Chr01g0010501 Lupinus albus HOM05D004752 ORTHO05D005523 2.7e-27 125.2 88 69.3
RcHm_v2.0_Chr7g0240801 Rosa chinensis HOM05D004752 ORTHO05D005523 2.7e-27 125.2 88 67.0
FvH4_5g38800 Fragaria vesca HOM05D004752 ORTHO05D005523 4.6e-27 124.4 88 67.0
FAN18G0635 Fragaria x ananassa HOM05D004752 ORTHO05D005523 4.6e-27 124.4 88 67.0
Glyma.20G068500 Glycine max HOM05D004752 ORTHO05D005523 4.6e-27 124.4 93 69.9
Manes.02G194400 Manihot esculenta HOM05D004752 ORTHO05D005523 4.6e-27 124.4 88 68.2
MELO3C008132.2 Cucumis melo HOM05D004752 ORTHO05D005523 6.0e-27 124.0 90 71.1
Rhsim06G0089000 Rhododendron simsii HOM05D004752 ORTHO05D005523 6.0e-27 124.0 94 67.0
Rhsim11G0057800 Rhododendron simsii HOM05D004752 ORTHO05D005523 6.0e-27 124.0 94 67.0
SalBow6G5891 Salvia bowleyana HOM05D004752 ORTHO05D005523 6.0e-27 124.0 92 70.7
vmacro00760 Vaccinium macrocarpon HOM05D004752 ORTHO05D005523 6.0e-27 124.0 94 68.1
CiPaw.05G229600 Carya illinoinensis HOM05D004752 ORTHO05D005523 7.8e-27 123.6 88 64.8
HanXRQChr04g0109661 Helianthus annuus HOM05D004752 ORTHO05D005523 7.8e-27 123.6 92 69.6
Lj4E474T0 Lonicera japonica HOM05D004752 ORTHO05D005523 7.8e-27 123.6 98 66.3
AUR62004632 Chenopodium quinoa HOM05D004752 ORTHO05D005523 1.3e-26 122.9 101 65.3
FAN04G0063 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.3e-26 122.9 88 65.9
FAN08G2110 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.7e-26 122.5 88 65.9
FAN13G0652 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.7e-26 122.5 88 65.9
Sc23g0001310 Simmondsia chinensis HOM05D004752 ORTHO05D005523 1.7e-26 122.5 92 69.6
CARHR064830 Cardamine hirsuta HOM05D004752 ORTHO05D005523 3.0e-26 121.7 89 69.7
ECA247G0381 Erigeron canadensis HOM05D004752 ORTHO05D005523 3.0e-26 121.7 95 66.3
Manes.18G103200 Manihot esculenta HOM05D004752 ORTHO05D005523 3.0e-26 121.7 91 65.9
arahy.Tifrunner.gnm1.ann1.0CG85F Arachis hypogaea HOM05D004752 ORTHO05D005523 5.1e-26 120.9 94 69.1
arahy.Tifrunner.gnm1.ann1.S21HCY Arachis hypogaea HOM05D004752 ORTHO05D005523 5.1e-26 120.9 94 69.1
C06p35220 Brassica napus HOM05D004752 ORTHO05D005523 5.1e-26 120.9 89 68.5
CiPaw.06G024200 Carya illinoinensis HOM05D004752 ORTHO05D005523 6.6e-26 120.6 88 64.8
Ca_21523_v3 Cicer arietinum L. HOM05D004752 ORTHO05D005523 6.6e-26 120.6 88 67.0
BcaC08g46647 Brassica carinata HOM05D004752 ORTHO05D005523 8.6e-26 120.2 89 68.5
BcaC08g46651 Brassica carinata HOM05D004752 ORTHO05D005523 8.6e-26 120.2 89 68.5
BcaC08g46652 Brassica carinata HOM05D004752 ORTHO05D005523 8.6e-26 120.2 89 68.5
PSO170G1458 Papaver somniferum HOM05D004752 ORTHO05D005523 8.6e-26 120.2 90 67.8
PSO782G1292 Papaver somniferum HOM05D004752 ORTHO05D005523 8.6e-26 120.2 90 67.8
Lj5g0024701 Lotus japonicus HOM05D004752 ORTHO05D005523 1.1e-25 119.8 91 69.2
Aa31LG4G8590 Aethionema arabicum HOM05D004752 ORTHO05D005523 1.5e-25 119.4 89 68.5
Carub.0002s1880 Capsella rubella HOM05D004752 ORTHO05D005523 1.5e-25 119.4 89 67.4
SalBow6G5456 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.5e-25 119.4 92 65.2
SalBow6G7070 Salvia bowleyana HOM05D004752 ORTHO05D005523 1.5e-25 119.4 92 65.2
C06p46120 Brassica napus HOM05D004752 ORTHO05D005523 1.9e-25 119.0 89 66.3
BolC6t39665H Brassica oleracea HOM05D004752 ORTHO05D005523 1.9e-25 119.0 89 66.3
TPR.G20783 Trifolium pratense HOM05D004752 ORTHO05D005523 1.9e-25 119.0 89 68.5
BcaB03g14924 Brassica carinata HOM05D004752 ORTHO05D005523 2.5e-25 118.6 89 66.3
BcaC08g45743 Brassica carinata HOM05D004752 ORTHO05D005523 2.5e-25 118.6 89 67.4
BcaC08g46649 Brassica carinata HOM05D004752 ORTHO05D005523 2.5e-25 118.6 89 66.3
BolC6t38628H Brassica oleracea HOM05D004752 ORTHO05D005523 2.5e-25 118.6 89 67.4
BraA07t31385Z Brassica rapa HOM05D004752 ORTHO05D005523 2.5e-25 118.6 89 67.4
MBI17_g21481_MAGBIO Magnolia biondii HOM05D004752 ORTHO05D005523 2.5e-25 118.6 77 72.7
Hund27095 Selenicereus undatus HOM05D004752 ORTHO05D005523 2.5e-25 118.6 92 67.4
Aqoxy5G02666 Aquilegia oxysepala HOM05D004752 ORTHO05D005523 3.3e-25 118.2 96 64.6
Sp5g27090 Schrenkiella parvula HOM05D004752 ORTHO05D005523 3.3e-25 118.2 89 66.3
MSTRG.25459 Avicennia marina HOM05D004752 ORTHO05D005523 4.3e-25 117.9 93 62.4
A07p30460 Brassica napus HOM05D004752 ORTHO05D005523 4.3e-25 117.9 98 65.3
Medtr1g048960 Medicago truncatula HOM05D004752 ORTHO05D005523 4.3e-25 117.9 89 68.5
BcaB03g15640 Brassica carinata HOM05D004752 ORTHO05D005523 5.6e-25 117.5 90 66.7
Eucgr.F02586 Eucalyptus grandis HOM05D004752 ORTHO05D005523 5.6e-25 117.5 97 66.0
MD00G1104100 Malus domestica HOM05D004752 ORTHO05D005523 5.6e-25 117.5 88 63.6
Nn5g27610 Nelumbo nucifera HOM05D004752 ORTHO05D005523 5.6e-25 117.5 91 67.0
Sc01g0001860 Simmondsia chinensis HOM05D004752 ORTHO05D005523 5.6e-25 117.5 93 65.6
TWI14G1278 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 7.3e-25 117.1 90 68.9
Actinidia03509 Actinidia chinensis HOM05D004752 ORTHO05D005523 9.5e-25 116.7 93 68.8
BraA07t30682Z Brassica rapa HOM05D004752 ORTHO05D005523 9.5e-25 116.7 98 65.3
FAN18G0607 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.2e-24 116.3 73 74.0
FAN18G1874 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.2e-24 116.3 73 74.0
FAN18G2073 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.2e-24 116.3 73 74.0
PGR102G0675 Punica granatum HOM05D004752 ORTHO05D005523 1.2e-24 116.3 94 68.1
QL12p035384 Quercus lobata HOM05D004752 ORTHO05D005523 1.2e-24 116.3 88 65.9
THA.LOC104809736 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 1.2e-24 116.3 89 66.3
BcaC03g15326 Brassica carinata HOM05D004752 ORTHO05D005523 1.6e-24 115.9 89 66.3
A02p17630 Brassica napus HOM05D004752 ORTHO05D005523 1.6e-24 115.9 89 66.3
C02p29310 Brassica napus HOM05D004752 ORTHO05D005523 1.6e-24 115.9 89 66.3
BolC2t08982H Brassica oleracea HOM05D004752 ORTHO05D005523 1.6e-24 115.9 89 66.3
BraA02t06809Z Brassica rapa HOM05D004752 ORTHO05D005523 1.6e-24 115.9 89 66.3
FAN02G3062 Fragaria x ananassa HOM05D004752 ORTHO05D005523 1.6e-24 115.9 73 74.0
BcaB05g24700 Brassica carinata HOM05D004752 ORTHO05D005523 2.1e-24 115.5 89 65.2
THA.LOC104816385 Tarenaya hassleriana HOM05D004752 ORTHO05D005523 2.1e-24 115.5 92 63.0
A07p38200 Brassica napus HOM05D004752 ORTHO05D005523 2.8e-24 115.2 89 65.2
Aa31LG7G6540 Aethionema arabicum HOM05D003880 ORTHO05D004959 3.6e-24 114.8 89 64.0
Thhalv10019369m.g Eutrema salsugineum HOM05D004752 ORTHO05D005523 3.6e-24 114.8 89 65.2
Lsat_1_v5_gn_1_12481 Lactuca sativa HOM05D004752 ORTHO05D005523 3.6e-24 114.8 92 67.4
TWI59G0745 Tripterygium wilfordii HOM05D004752 ORTHO05D005523 3.6e-24 114.8 90 65.6
Duzib177G0197 Durio zibethinus HOM05D004752 ORTHO05D005523 6.2e-24 114.0 94 61.7
SalBow6G0286 Salvia bowleyana HOM05D004752 ORTHO05D005523 6.2e-24 114.0 98 63.3
Sabra19G0093300 Salix brachista HOM05D004752 ORTHO05D005523 1.1e-23 113.2 75 74.7
SGA_v2.0_scaffold118G32535 Striga asiatica HOM05D003880 ORTHO05D004959 1.1e-23 113.2 73 75.3
Zm00001eb082670 Zea mays HOM05D004752 ORTHO05D005523 1.4e-23 112.8 74 71.6
VMungo0720G2181 Vigna mungo HOM05D004752 ORTHO05D005523 3.1e-23 111.7 94 62.8
Os04g0432600 Oryza sativa ssp. japonica HOM05D004752 ORTHO05D005523 6.8e-23 110.5 91 63.7
AL2G31650 Arabidopsis lyrata HOM05D004752 ORTHO05D005523 4.4e-22 107.8 90 63.3
ATR0071G025 Amborella trichopoda HOM05D004752 ORTHO05D005523 9.9e-22 106.7 74 71.6
MD15G1358900 Malus domestica HOM05D004752 ORTHO05D005523 1.7e-21 105.9 88 58.0
AT1G72020 Arabidopsis thaliana HOM05D004752 ORTHO05D005523 2.2e-21 105.5 90 61.1
Rhsim11G0056800 Rhododendron simsii HOM05D004752 ORTHO05D005523 2.9e-21 105.1 118 53.4
unitig_0.g2130 Utricularia gibba HOM05D004752 ORTHO05D005523 4.9e-21 104.4 87 62.1
CANSAT80G1056 Cannabis sativa HOM05D004752 ORTHO05D005523 8.4e-21 103.6 96 62.5
Gohir.A09G115700 Gossypium hirsutum HOM05D004752 ORTHO05D005523 1.1e-20 103.2 63 76.2
Zm00001eb243470 Zea mays HOM05D004752 ORTHO05D005523 1.9e-20 102.4 88 58.0
SEGI_26065 Sequoiadendron giganteum HOM05D004752 ORTHO05D005523 2.4e-20 102.1 85 58.8
GSVIVG01012767001 Vitis vinifera HOM05D004752 ORTHO05D005523 7.1e-20 100.5 107 56.1
HPP92_000079 Vanilla planifolia HOM05D004752 ORTHO05D005523 6.0e-19 97.4 59 76.3
CDE07G1886 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 1.7e-18 95.9 97 54.6
CDE04G0573 Ceratophyllum demersum HOM05D004752 ORTHO05D005523 3.9e-18 94.7 89 56.2
unitig_747.g21474 Utricularia gibba HOM05D004752 ORTHO05D005523 7.3e-17 90.5 62 72.6
SHI09031 Sapria himalayana HOM05D004752 ORTHO05D005523 1.4e-15 86.3 61 65.6
Pp3c19_1780 Physcomitrium patens HOM05D004752 ORTHO05D005523 1.5e-09 66.2 91 38.5
AagrBONN_evm.TU.Sc2ySwM_117.1418 Anthoceros agrestis HOM05D004752 ORTHO05D005523 3.3e-09 65.1 86 41.9
CBR_g3658 Chara braunii HOM05D004752 ORTHO05D005523 7.3e-09 63.9 60 51.7
Mapoly0001s0236 Marchantia polymorpha HOM05D004752 ORTHO05D005523 6.9e-07 57.4 99 38.4


User provided reference genes

Program Settings