Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 5.6e-214 747.3 362 100.0
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 2.2e-186 655.6 470 72.1
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 1.8e-183 646.0 358 90.2
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 2.1e-181 639.0 374 85.3
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 4.2e-177 624.8 358 85.8
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 1.2e-163 580.1 354 79.9
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 5.5e-161 571.2 358 77.1
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 1.2e-160 570.1 298 90.6
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 6.1e-160 567.8 364 76.6
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 7.9e-160 567.4 361 77.0
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 1.4e-159 566.6 358 77.7
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 3.9e-159 565.1 361 76.5
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 1.5e-158 563.1 365 74.8
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 4.4e-158 561.6 359 75.2
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 9.7e-158 560.5 358 77.1
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 9.7e-158 560.5 358 76.3
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 1.3e-157 560.1 358 77.4
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.7e-157 559.7 362 76.8
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 8.2e-157 557.4 358 76.3
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 2.4e-156 555.8 358 76.5
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 3.1e-156 555.4 359 77.2
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 5.3e-156 554.7 358 74.6
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 7.0e-156 554.3 359 74.7
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 1.2e-155 553.5 365 73.7
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 1.2e-155 553.5 358 76.8
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 2.6e-155 552.4 358 75.4
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 5.9e-155 551.2 358 73.7
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 7.7e-155 550.8 369 73.7
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 5.0e-154 548.1 362 72.9
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 8.5e-154 547.4 364 75.0
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 2.5e-153 545.8 359 73.5
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 2.5e-153 545.8 379 72.8
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 3.2e-153 545.4 361 74.2
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 3.2e-153 545.4 363 72.7
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 4.2e-153 545.0 358 72.9
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 4.2e-153 545.0 358 74.3
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 9.4e-153 543.9 358 73.5
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 2.7e-152 542.3 369 73.4
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 4.7e-152 541.6 302 83.1
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 4.7e-152 541.6 298 84.6
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 1.0e-151 540.4 360 72.5
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 8.8e-151 537.3 362 74.0
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 1.5e-150 536.6 365 72.1
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 3.3e-150 535.4 357 73.9
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.3e-150 535.4 364 73.6
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 7.5e-150 534.3 361 72.6
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 9.7e-150 533.9 308 78.9
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 1.7e-149 533.1 363 71.3
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 3.7e-149 531.9 361 72.6
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 6.3e-149 531.2 372 70.7
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 6.3e-149 531.2 363 71.3
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 9.1e-148 527.3 358 68.7
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 2.7e-147 525.8 306 80.1
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 4.5e-147 525.0 363 70.5
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 1.0e-146 523.9 358 69.8
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 1.7e-146 523.1 358 70.9
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 1.7e-146 523.1 362 70.7
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 2.2e-146 522.7 363 71.1
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 2.9e-146 522.3 363 71.1
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 2.9e-146 522.3 303 79.9
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 2.9e-146 522.3 360 69.7
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 3.8e-146 521.9 361 69.8
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 3.8e-146 521.9 361 69.8
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 5.0e-146 521.5 306 80.4
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 5.0e-146 521.5 308 80.2
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 6.5e-146 521.2 360 70.8
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 1.1e-145 520.4 358 70.9
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 1.5e-145 520.0 361 70.4
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 1.9e-145 519.6 356 69.7
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 1.9e-145 519.6 382 68.1
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 4.2e-145 518.5 385 66.5
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 9.4e-145 517.3 358 70.1
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 1.2e-144 516.9 361 70.1
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 1.6e-144 516.5 357 70.0
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 2.7e-144 515.8 358 69.3
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 4.7e-144 515.0 361 69.8
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 1.0e-143 513.8 358 68.7
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 3.0e-143 512.3 308 76.3
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 3.0e-143 512.3 361 69.0
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 3.0e-143 512.3 357 71.1
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 6.8e-143 511.1 307 77.9
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 8.8e-143 510.8 359 70.2
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 1.5e-142 510.0 361 69.5
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 2.0e-142 509.6 358 68.7
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 2.6e-142 509.2 361 70.4
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 2.6e-142 509.2 361 69.5
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 3.4e-142 508.8 301 77.4
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 4.4e-142 508.4 358 70.7
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 9.8e-142 507.3 359 69.4
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 2.8e-141 505.8 361 67.9
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 4.8e-141 505.0 359 68.8
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 6.3e-141 504.6 362 68.8
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 2.4e-140 502.7 361 68.7
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 5.4e-140 501.5 360 67.8
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 7.0e-140 501.1 358 72.3
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 9.1e-140 500.7 361 68.4
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 9.1e-140 500.7 361 68.4
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.2e-139 500.4 358 67.6
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 2.7e-139 499.2 362 68.2
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 4.5e-139 498.4 329 75.4
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 2.9e-138 495.7 363 68.3
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 6.5e-138 494.6 359 68.2
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 2.5e-137 492.7 346 69.9
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 2.8e-136 489.2 284 84.5
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 2.2e-133 479.6 303 73.3
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 5.4e-132 474.9 383 63.4
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 5.9e-131 471.5 357 65.3
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 5.0e-130 468.4 302 70.9
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 1.1e-129 467.2 308 73.7
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 4.4e-126 455.3 331 69.5
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 1.7e-125 453.4 342 68.4
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 2.9e-125 452.6 330 67.9
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 4.1e-124 448.7 275 76.4
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 6.8e-119 431.4 277 71.8
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 1.9e-116 423.3 275 69.8
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 1.6e-112 410.2 355 59.4
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 7.5e-110 401.4 341 62.2
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 1.1e-108 397.5 360 59.4
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 3.9e-106 389.0 287 64.8
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 3.1e-103 379.4 265 71.7
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 4.4e-102 375.6 280 64.6
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 7.6e-102 374.8 236 73.7
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 2.5e-97 359.8 280 60.7
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 5.2e-95 352.1 245 65.3
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 2.2e-93 346.7 258 65.9
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 3.0e-90 336.3 284 57.0
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 5.6e-89 332.0 341 55.1
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 4.5e-86 322.4 282 57.8
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 1.4e-76 290.8 159 81.8
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 3.3e-73 279.6 158 82.9
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 2.5e-65 253.4 229 54.6
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 2.8e-56 223.4 143 69.2
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 6.9e-55 218.8 281 46.3
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 9.4e-52 208.4 117 81.2
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 5.1e-50 202.6 147 66.7
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 2.9e-45 186.8 147 64.6
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 4.7e-43 179.5 147 63.9
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.0e-41 174.1 100 75.0
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 9.7e-41 171.8 96 75.0
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 8.5e-37 158.7 147 55.1
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 7.2e-36 155.6 110 64.5
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 1.3e-24 118.2 62 85.5
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 6.3e-24 115.9 81 69.1
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 5.0e-21 106.3 116 48.3
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 8.0e-19 99.0 54 81.5
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 3.4e-17 93.6 65 67.7
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 3.4e-17 93.6 65 67.7
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 2.7e-14 84.0 45 75.6
Oeu030496.1 Olea europaea HOM05D004804 ORTHO05D005882 3.5e-14 83.6 95 56.8
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 5.9e-14 82.8 45 75.6
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 1.0e-13 82.0 44 77.3
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 2.5e-12 77.4 41 78.0
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 4.7e-11 73.2 35 82.9
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 1.4e-10 71.6 61 60.7
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 1.5e-09 68.2 40 82.5
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 8.3e-08 62.4 117 30.8


User provided reference genes

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