Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 0.0e+00 2204.1 1066 100.0
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 0.0e+00 1978.8 1342 75.8
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 0.0e+00 1699.1 1382 64.5
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 2.9e-287 992.3 1473 40.5
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 4.7e-285 984.9 1406 41.6
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 1.0e-284 983.8 1430 41.7
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 1.8e-284 983.0 1394 40.2
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 4.0e-284 981.9 1415 41.3
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 5.2e-284 981.5 1399 41.5
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 2.6e-283 979.2 1404 40.5
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 1.8e-281 973.0 1394 41.5
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 2.8e-277 959.1 1411 40.5
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 1.5e-275 953.4 1392 40.2
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 8.3e-274 947.6 1388 40.0
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.1e-273 947.2 1405 41.2
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 1.9e-273 946.4 1456 39.7
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 1.2e-269 933.7 1470 38.6
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 3.6e-269 932.2 1393 39.7
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 6.2e-269 931.4 1423 39.7
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 1.4e-268 930.2 1371 40.9
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 4.4e-267 925.2 1391 39.8
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 3.2e-265 919.1 1383 39.6
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 4.1e-265 918.7 1386 39.4
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 5.4e-265 918.3 1391 39.7
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 9.2e-265 917.5 1410 39.8
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 1.0e-263 914.1 1455 39.0
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 1.0e-263 914.1 1379 38.9
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 1.3e-263 913.7 1495 37.9
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 4.7e-261 905.2 1417 38.5
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 1.8e-260 903.3 1374 39.7
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 8.9e-260 901.0 1407 38.8
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 1.5e-259 900.2 1386 39.5
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 5.8e-259 898.3 1361 39.1
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 7.6e-259 897.9 1400 39.6
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 1.1e-257 894.0 1399 38.1
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 4.1e-257 892.1 1403 38.6
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 2.1e-256 889.8 1413 38.4
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 1.7e-255 886.7 1390 39.4
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 5.1e-255 885.2 1384 39.2
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 1.1e-254 884.0 1367 39.1
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 3.3e-254 882.5 1414 38.2
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 3.3e-254 882.5 1397 39.0
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 3.6e-253 879.0 1352 39.6
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 3.1e-252 875.9 1389 38.8
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 1.5e-251 873.6 1397 38.7
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 2.0e-251 873.2 1407 37.8
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 2.0e-251 873.2 1384 38.4
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 3.4e-251 872.5 1396 37.5
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 9.9e-251 870.9 1404 39.2
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 7.1e-249 864.8 1381 39.6
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 2.1e-248 863.2 1362 37.2
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 2.1e-248 863.2 1397 38.2
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 3.5e-248 862.4 1379 37.6
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 1.3e-247 860.5 1369 37.8
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 3.9e-247 859.0 1370 36.9
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 1.9e-246 856.7 1373 36.8
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 4.3e-246 855.5 1412 37.7
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 4.3e-246 855.5 1362 37.5
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 4.3e-246 855.5 1363 37.8
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 5.6e-246 855.1 1399 37.7
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 5.6e-246 855.1 1368 37.6
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 2.1e-245 853.2 1364 37.3
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 3.1e-244 849.4 1363 37.2
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 1.2e-243 847.4 1362 37.3
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 9.3e-241 837.8 1366 38.1
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 1.6e-240 837.0 1379 36.5
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 6.0e-240 835.1 1401 36.7
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 1.6e-237 827.0 1346 38.4
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 1.1e-233 814.3 1336 37.9
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 2.4e-233 813.1 1458 35.7
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 2.7e-224 783.1 1394 37.6
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 3.3e-222 776.2 1141 40.7
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 2.8e-221 773.1 1389 36.1
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 5.9e-219 765.4 1389 35.4
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 2.9e-218 763.1 1369 35.7
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 2.5e-217 760.0 1444 35.3
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 7.4e-214 748.4 756 51.9
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 2.8e-213 746.5 1381 36.1
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 4.8e-213 745.7 1176 37.8
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 8.2e-213 745.0 755 52.6
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 1.2e-211 741.1 1383 35.4
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 3.4e-211 739.6 1421 35.2
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 2.9e-202 709.9 1166 37.4
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 5.2e-199 699.1 757 49.7
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 9.7e-198 694.9 738 50.9
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 1.3e-197 694.5 745 49.4
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 1.4e-191 674.5 1081 38.2
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 3.8e-178 629.8 655 51.9
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 5.8e-166 589.3 741 44.9
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 1.1e-164 585.1 975 36.9
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 2.4e-164 583.9 980 37.4
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 5.4e-164 582.8 1030 34.8
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 1.6e-147 528.1 708 43.6
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 1.6e-139 501.5 1486 29.0
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 4.2e-132 476.9 807 37.7
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 3.5e-131 473.8 1231 30.0
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 2.6e-126 457.6 1529 26.4
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 1.1e-116 425.6 361 59.6
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 4.6e-115 420.2 1491 25.8
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 1.1e-111 409.1 360 57.5
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 1.4e-111 408.7 391 54.7
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 5.3e-103 380.2 469 47.1
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 2.2e-93 348.2 230 74.8
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 1.2e-91 342.4 356 52.5
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 1.0e-85 322.8 444 43.7
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 9.4e-84 316.2 435 41.1
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 3.5e-78 297.7 311 48.9
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 4.5e-70 270.8 1241 25.2
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 2.9e-69 268.1 336 47.6
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 7.5e-65 253.4 346 43.9
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.5e-57 229.2 300 42.0
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 2.2e-56 225.3 387 36.7
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 1.9e-52 212.2 265 48.7
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 2.1e-51 208.8 260 46.2
RcHm_v2.0_Chr3g0486491 Rosa chinensis HOM05D004810 ORTHO05D006272 1.7e-48 199.1 179 53.6
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.9e-47 195.7 206 46.1
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 8.6e-45 186.8 236 46.2
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 2.5e-44 185.3 192 50.0
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 9.8e-41 173.3 198 45.5
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 4.9e-40 171.0 168 53.0
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 2.8e-35 155.2 404 29.5
MD17G1281800 Malus domestica HOM05D004810 ORTHO05D006272 8.1e-35 153.7 97 71.1
CAN.G100.30 Capsicum annuum HOM05D004810 ORTHO05D006272 1.1e-34 153.3 76 90.8
SHI15443 Sapria himalayana HOM05D004810 ORTHO05D006272 5.1e-29 134.4 254 34.6
FAN24G0870 Fragaria x ananassa HOM05D004810 ORTHO05D006272 6.2e-27 127.5 149 45.6
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-25 122.9 284 29.6
Actinidia06394 Actinidia chinensis HOM05D004810 ORTHO05D006272 1.3e-24 119.8 144 46.5
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 1.2e-22 113.2 124 45.2
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 6.0e-22 110.9 252 33.7
FvH4_2g08080 Fragaria vesca HOM05D004810 ORTHO05D006272 2.8e-19 102.1 103 49.5
RcHm_v2.0_Chr3g0486521 Rosa chinensis HOM05D004810 ORTHO05D006272 1.4e-18 99.8 87 57.5
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 1.8e-18 99.4 86 55.8
Actinidia06392 Actinidia chinensis HOM05D004810 ORTHO05D006272 6.6e-13 80.9 63 63.5
FvH4_6g28340 Fragaria vesca HOM05D003050 ORTHO05D006272 9.6e-12 77.0 80 47.5
MBI14_g40313_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 9.6e-12 77.0 61 60.7
MBI15_g23571_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 9.6e-12 77.0 61 60.7
MBI13_g10212_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.4e-10 73.2 61 59.0
MBI14_g17170_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 1.2e-09 70.1 57 61.4
Hund09691 Selenicereus undatus HOM05D004810 ORTHO05D006272 1.5e-09 69.7 89 49.4
MBI19_g30553_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 2.0e-09 69.3 55 63.6
FAN14G3945 Fragaria x ananassa HOM05D004810 ORTHO05D029461 4.5e-09 68.2 53 58.5
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 7.6e-09 67.4 87 37.9
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 2.2e-08 65.9 57 52.6
Nitab4.5_0003633g0010 Nicotiana tabacum HOM05D002634 ORTHO05D003100 6.4e-08 64.3 155 30.3
CBR_g26440 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-07 62.8 68 44.1
FvH4_6g46150 Fragaria vesca HOM05D004810 ORTHO05D029461 2.4e-07 62.4 53 54.7
Zm00001eb325000 Zea mays HOM05D002943 ORTHO05D002685 7.1e-07 60.8 130 31.5
BcaB08g35978 Brassica carinata HOM05D005961 ORTHO05D007391 9.3e-07 60.5 100 34.0
BcaC04g20139 Brassica carinata HOM05D005961 ORTHO05D007391 9.3e-07 60.5 100 34.0
A10p13350 Brassica napus HOM05D005961 ORTHO05D007391 9.3e-07 60.5 100 34.0
C09p47280 Brassica napus HOM05D005961 ORTHO05D007391 9.3e-07 60.5 100 34.0
BolC9t57585H Brassica oleracea HOM05D005961 ORTHO05D007391 9.3e-07 60.5 100 34.0
BraA10t43436Z Brassica rapa HOM05D005961 ORTHO05D007391 9.3e-07 60.5 100 34.0
Hma1.2p1_0240F.1_g100120 Hydrangea macrophylla HOM05D002634 ORTHO05D003100 9.3e-07 60.5 117 31.6
FvH4_3g18411 Fragaria vesca HOM05D004810 ORTHO05D029461 1.2e-06 60.1 43 60.5
MD17G1281500 Malus domestica HOM05D004810 ORTHO05D006272 2.1e-06 59.3 51 51.0
Solyc12g088540.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 2.1e-06 59.3 139 27.3
Actinidia16142 Actinidia chinensis HOM05D002279 ORTHO05D006272 2.7e-06 58.9 29 75.9
CARHR269490 Cardamine hirsuta HOM05D005961 ORTHO05D007391 2.7e-06 58.9 100 34.0
Thhalv10014152m.g Eutrema salsugineum HOM05D005961 ORTHO05D007391 2.7e-06 58.9 100 34.0
Sp6g17980 Schrenkiella parvula HOM05D005961 ORTHO05D007391 4.6e-06 58.2 100 34.0
AL8G31760 Arabidopsis lyrata HOM05D005961 ORTHO05D007391 7.9e-06 57.4 100 33.0
Carub.0008s1645 Capsella rubella HOM05D005961 ORTHO05D007391 7.9e-06 57.4 100 33.0
Dinv35913 Davidia involucrata HOM05D002634 ORTHO05D003100 7.9e-06 57.4 125 30.4


User provided reference genes

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