Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002980g0120 Nicotiana tabacum HOM05D001951 ORTHO05D003675 4.2e-75 284.6 147 100.0
CAN.G206.158 Capsicum annuum HOM05D001951 ORTHO05D003675 3.8e-36 155.2 183 51.9
Solyc02g088040.1 Solanum lycopersicum HOM05D001951 ORTHO05D003675 1.8e-33 146.4 187 51.3
Sopen02g032760 Solanum pennellii HOM05D001951 ORTHO05D003675 1.8e-33 146.4 187 51.3
PGSC0003DMG400001424 Solanum tuberosum HOM05D001951 ORTHO05D003675 2.6e-32 142.5 192 49.0
Solyc02g067250.3 Solanum lycopersicum HOM05D001951 ORTHO05D003675 7.0e-30 134.4 192 47.4
PGSC0003DMG400006631 Solanum tuberosum HOM05D001951 ORTHO05D003675 1.0e-28 130.6 195 47.2
Nitab4.5_0000274g0240 Nicotiana tabacum HOM05D001951 ORTHO05D003675 2.2e-28 129.4 198 46.5
Peaxi162Scf00011g00292 Petunia axillaris HOM05D001951 ORTHO05D003675 2.9e-28 129.0 192 45.8
Sopen02g016430 Solanum pennellii HOM05D001951 ORTHO05D003675 1.9e-27 126.3 179 48.0
Nitab4.5_0009980g0020 Nicotiana tabacum HOM05D001951 ORTHO05D003675 5.5e-27 124.8 161 52.8
Cc07_g03460 Coffea canephora HOM05D001951 ORTHO05D003675 7.2e-27 124.4 197 43.7
Nitab4.5_0004672g0010 Nicotiana tabacum HOM05D001951 ORTHO05D003675 9.4e-27 124.0 197 44.7
CAN.G1275.2 Capsicum annuum HOM05D001951 ORTHO05D003675 4.7e-26 121.7 183 45.4
Dinv33770 Davidia involucrata HOM05D001951 ORTHO05D003675 2.0e-24 116.3 194 41.8
Oeu027850.1 Olea europaea HOM05D001951 ORTHO05D003675 2.6e-24 115.9 195 43.6
Rhsim08G0070000 Rhododendron simsii HOM05D001951 ORTHO05D003675 2.8e-23 112.5 190 41.1
MSTRG.3330 Avicennia marina HOM05D001951 ORTHO05D003675 1.1e-22 110.5 198 43.4
Lju41C11T8 Lonicera japonica HOM05D001951 ORTHO05D003675 2.4e-22 109.4 193 40.4
CSS0013635 Camellia sinensis var. sinensis HOM05D001951 ORTHO05D003675 5.4e-22 108.2 183 42.6
CSS0029379 Camellia sinensis var. sinensis HOM05D001951 ORTHO05D003675 5.4e-22 108.2 183 42.6
SGA_v2.0_scaffold236G43772 Striga asiatica HOM05D001951 ORTHO05D003675 7.0e-22 107.8 188 43.6
CSS0043902 Camellia sinensis var. sinensis HOM05D001951 ORTHO05D003675 1.6e-21 106.7 176 42.0
CSS0045319 Camellia sinensis var. sinensis HOM05D001951 ORTHO05D003675 1.6e-21 106.7 176 42.0
Migut.K01321 Erythranthe guttata HOM05D001951 ORTHO05D003675 2.7e-21 105.9 187 40.6
SalBow1G3720 Salvia bowleyana HOM05D001951 ORTHO05D003675 2.7e-21 105.9 184 42.9
MD00G1131300 Malus domestica HOM05D001951 ORTHO05D003675 4.5e-21 105.1 176 42.6
FAN05G0187 Fragaria x ananassa HOM05D001951 ORTHO05D003675 1.0e-20 104.0 176 42.0
FAN09G3482 Fragaria x ananassa HOM05D001951 ORTHO05D003675 1.0e-20 104.0 176 42.0
FAN23G0240 Fragaria x ananassa HOM05D001951 ORTHO05D003675 1.0e-20 104.0 176 42.0
Prupe.3G266300 Prunus persica HOM05D001951 ORTHO05D003675 1.0e-20 104.0 176 42.6
RcHm_v2.0_Chr2g0167781 Rosa chinensis HOM05D001951 ORTHO05D003675 1.0e-20 104.0 176 42.0
Ah.10g031670 Amaranthus hybridus HOM05D001951 ORTHO05D003675 1.3e-20 103.6 178 41.0
MSTRG.15472 Avicennia marina HOM05D001951 ORTHO05D003675 1.3e-20 103.6 200 42.0
DCAR_011090 Daucus carota HOM05D001951 ORTHO05D003675 1.3e-20 103.6 197 41.1
Duzib147G0717 Durio zibethinus HOM05D001951 ORTHO05D003675 1.3e-20 103.6 176 42.6
FvH4_6g48280 Fragaria vesca HOM05D001951 ORTHO05D003675 1.7e-20 103.2 176 41.5
FAN14G4090 Fragaria x ananassa HOM05D001951 ORTHO05D003675 1.7e-20 103.2 176 41.5
SalBow1G1139 Salvia bowleyana HOM05D001951 ORTHO05D003675 1.7e-20 103.2 198 42.4
SalBow1G6828 Salvia bowleyana HOM05D001951 ORTHO05D003675 2.3e-20 102.8 198 42.4
Manes.01G092000 Manihot esculenta HOM05D001951 ORTHO05D003675 2.9e-20 102.4 197 38.6
SGA_v2.0_scaffold413G51192 Striga asiatica HOM05D001951 ORTHO05D003675 5.0e-20 101.7 185 43.8
Manes.02G047100 Manihot esculenta HOM05D001951 ORTHO05D003675 6.6e-20 101.3 187 38.0
Gohir.A11G069900 Gossypium hirsutum HOM05D001951 ORTHO05D003675 1.1e-19 100.5 196 40.3
Potri.004G121900 Populus trichocarpa HOM05D001951 ORTHO05D003675 1.5e-19 100.1 196 37.2
Thecc.04G083600 Theobroma cacao HOM05D001951 ORTHO05D003675 1.5e-19 100.1 176 41.5
VMungo1383G1218 Vigna mungo HOM05D001951 ORTHO05D003675 1.9e-19 99.8 187 37.4
Duzib264G0881 Durio zibethinus HOM05D001951 ORTHO05D003675 2.5e-19 99.4 176 42.0
COL.COLO4_08438 Corchorus olitorius HOM05D001951 ORTHO05D003675 4.2e-19 98.6 195 39.5
MELO3C021992.2 Cucumis melo HOM05D001951 ORTHO05D003675 5.5e-19 98.2 194 38.1
FAN02G4285 Fragaria x ananassa HOM05D001951 ORTHO05D003675 7.2e-19 97.8 176 40.9
Gorai.007G079200 Gossypium raimondii HOM05D001951 ORTHO05D003675 7.2e-19 97.8 196 39.8
ClCG09G018160 Citrullus lanatus HOM05D001951 ORTHO05D003675 9.5e-19 97.4 178 39.3
Gohir.D11G073800 Gossypium hirsutum HOM05D001951 ORTHO05D003675 1.2e-18 97.1 176 41.5
Phvul.008G036900 Phaseolus vulgaris HOM05D001951 ORTHO05D003675 1.2e-18 97.1 196 37.2
Lj1g0007733 Lotus japonicus HOM05D001951 ORTHO05D003675 1.6e-18 96.7 186 34.9
Glyma.09G237100 Glycine max HOM05D001951 ORTHO05D003675 2.8e-18 95.9 187 36.9
Glyma.19G023000 Glycine max HOM05D001951 ORTHO05D003675 2.8e-18 95.9 183 37.2
SalBow1G7917 Salvia bowleyana HOM05D001951 ORTHO05D003675 2.8e-18 95.9 161 45.3
MD09G1052400 Malus domestica HOM05D001951 ORTHO05D003675 3.6e-18 95.5 177 41.2
Sabra17G0074400 Salix brachista HOM05D001951 ORTHO05D003675 3.6e-18 95.5 197 36.0
Cfa007570 Carpinus fangiana HOM05D001951 ORTHO05D003675 4.7e-18 95.1 176 38.1
Haze_14516 Corylus avellana HOM05D001951 ORTHO05D003675 4.7e-18 95.1 176 38.1
Potri.017G084500 Populus trichocarpa HOM05D001951 ORTHO05D003675 6.1e-18 94.7 196 36.2
Medtr7g010930 Medicago truncatula HOM05D001951 ORTHO05D003675 8.0e-18 94.4 187 35.8
PGR004G2413 Punica granatum HOM05D001951 ORTHO05D003675 8.0e-18 94.4 197 36.0
Sc10g0003540 Simmondsia chinensis HOM05D001951 ORTHO05D003675 8.0e-18 94.4 198 36.4
MBI05_g42874_MAGBIO Magnolia biondii HOM05D001951 ORTHO05D003675 1.0e-17 94.0 193 37.8
THA.LOC104821027 Tarenaya hassleriana HOM05D001951 ORTHO05D003675 1.0e-17 94.0 196 38.8
AUR62034424 Chenopodium quinoa HOM05D001951 ORTHO05D003675 1.4e-17 93.6 196 35.7
Duzib187G1521 Durio zibethinus HOM05D001951 ORTHO05D003675 1.4e-17 93.6 177 40.7
Glyma.13G062600 Glycine max HOM05D001951 ORTHO05D003675 1.4e-17 93.6 198 35.4
Sed0001013 Sechium edule HOM05D001951 ORTHO05D003675 1.4e-17 93.6 178 37.6
Glyma.18G260400 Glycine max HOM05D001951 ORTHO05D003675 1.8e-17 93.2 187 35.3
Lj2g0025050 Lotus japonicus HOM05D001951 ORTHO05D003675 2.3e-17 92.8 196 36.7
Aqoxy3G03419 Aquilegia oxysepala HOM05D001951 ORTHO05D003675 3.0e-17 92.4 195 36.9
Ca_04286_v3 Cicer arietinum L. HOM05D001951 ORTHO05D003675 3.0e-17 92.4 184 37.5
Ca_29847_v3 Cicer arietinum L. HOM05D001951 ORTHO05D003675 3.0e-17 92.4 184 37.5
MD00G1124900 Malus domestica HOM05D001951 ORTHO05D003675 4.0e-17 92.0 150 42.7
TPR.G8808 Trifolium pratense HOM05D001951 ORTHO05D003675 4.0e-17 92.0 185 38.9
Nn4g23193 Nelumbo nucifera HOM05D001951 ORTHO05D003675 5.2e-17 91.7 197 36.5
QL02p082460 Quercus lobata HOM05D001951 ORTHO05D003675 6.8e-17 91.3 181 39.2
CiPaw.03G025500 Carya illinoinensis HOM05D001951 ORTHO05D003675 8.9e-17 90.9 176 36.9
AUR62039801 Chenopodium quinoa HOM05D001951 ORTHO05D003675 1.2e-16 90.5 183 35.0
Medtr6g012390 Medicago truncatula HOM05D001951 ORTHO05D003675 1.2e-16 90.5 182 35.2
Lalb_Chr06g0175301 Lupinus albus HOM05D001951 ORTHO05D003675 1.5e-16 90.1 185 37.8
Sed0014049 Sechium edule HOM05D001951 ORTHO05D003675 1.5e-16 90.1 178 37.6
TAR622G0207 Trochodendron aralioides HOM05D001951 ORTHO05D003675 2.0e-16 89.7 189 36.0
Psat1g073560 Pisum sativum HOM05D001951 ORTHO05D003675 2.6e-16 89.4 183 38.3
MSTRG.23930 Avicennia marina HOM05D001951 ORTHO05D003675 3.4e-16 89.0 196 38.3
Oeu021384.1 Olea europaea HOM05D001951 ORTHO05D003675 3.4e-16 89.0 131 47.3
Phvul.004G029200 Phaseolus vulgaris HOM05D001951 ORTHO05D003675 3.4e-16 89.0 181 37.0
Sp6g28820 Schrenkiella parvula HOM05D001951 ORTHO05D003675 3.4e-16 89.0 180 38.3
CARHR198060 Cardamine hirsuta HOM05D001951 ORTHO05D003675 5.7e-16 88.2 187 36.4
Thhalv10015333m.g Eutrema salsugineum HOM05D001951 ORTHO05D003675 7.5e-16 87.8 180 36.7
unitig_748.g8616 Utricularia gibba HOM05D001951 ORTHO05D003675 7.5e-16 87.8 196 35.7
VMungo0464G1424 Vigna mungo HOM05D001951 ORTHO05D003675 9.8e-16 87.4 185 37.3
Gohir.A09G015000 Gossypium hirsutum HOM05D001951 ORTHO05D003675 1.3e-15 87.0 176 36.9
CANSAT64G2866 Cannabis sativa HOM05D001951 ORTHO05D003675 1.7e-15 86.7 176 38.1
Lalb_Chr02g0159321 Lupinus albus HOM05D001951 ORTHO05D003675 1.7e-15 86.7 185 37.8
SGA_v2.0_scaffold205G41795 Striga asiatica HOM05D001951 ORTHO05D003675 2.2e-15 86.3 179 39.7
Cpa.g.c33094 Carica papaya HOM05D001951 ORTHO05D003675 2.8e-15 85.9 190 34.7
CiPaw.04G016500 Carya illinoinensis HOM05D001951 ORTHO05D003675 2.8e-15 85.9 188 35.1
Carub.0006s1344 Capsella rubella HOM05D001951 ORTHO05D003675 3.7e-15 85.5 180 36.1
Lalb_Chr21g0318681 Lupinus albus HOM05D001951 ORTHO05D003675 3.7e-15 85.5 187 35.8
PGR083G2850 Punica granatum HOM05D001951 ORTHO05D003675 3.7e-15 85.5 177 36.7
Ciclev10012667m.g Citrus clementina HOM05D001951 ORTHO05D003675 4.9e-15 85.1 174 36.2
Thhalv10021455m.g Eutrema salsugineum HOM05D001951 ORTHO05D003675 6.3e-15 84.7 155 38.1
Gohir.D09G013500 Gossypium hirsutum HOM05D001951 ORTHO05D003675 1.4e-14 83.6 176 36.4
Gorai.006G015600 Gossypium raimondii HOM05D001951 ORTHO05D003675 1.4e-14 83.6 176 36.4
Rhsim10G0038500 Rhododendron simsii HOM05D001951 ORTHO05D003675 1.4e-14 83.6 191 35.1
AL6G26120 Arabidopsis lyrata HOM05D001951 ORTHO05D003675 1.8e-14 83.2 175 36.0
Ca_02907_v3 Cicer arietinum L. HOM05D001951 ORTHO05D003675 1.8e-14 83.2 188 34.6
Psat3g197720 Pisum sativum HOM05D001951 ORTHO05D003675 1.8e-14 83.2 188 33.5
TPR.G33565 Trifolium pratense HOM05D001951 ORTHO05D003675 2.4e-14 82.8 182 35.2
TWI32G0272 Tripterygium wilfordii HOM05D001951 ORTHO05D003675 2.4e-14 82.8 193 36.3
BcaC05g30388 Brassica carinata HOM05D001951 ORTHO05D003675 3.1e-14 82.4 164 36.6
BolC5t35122H Brassica oleracea HOM05D001951 ORTHO05D003675 3.1e-14 82.4 164 36.6
CsaV3_5G038100 Cucumis sativus L. HOM05D001951 ORTHO05D003675 3.1e-14 82.4 126 38.9
Eucgr.I01946 Eucalyptus grandis HOM05D001951 ORTHO05D003675 4.1e-14 82.0 187 36.4
Gorai.004G175400 Gossypium raimondii HOM05D001951 ORTHO05D003675 4.1e-14 82.0 160 36.9
PSO013G0306 Papaver somniferum HOM05D001951 ORTHO05D003675 4.1e-14 82.0 173 37.6
AT5G15260 Arabidopsis thaliana HOM05D001951 ORTHO05D003675 5.4e-14 81.6 172 36.6
Atru.chr8.180 Acer truncatum HOM05D001951 ORTHO05D003675 7.0e-14 81.3 215 34.4
HanXRQChr15g0473231 Helianthus annuus HOM05D001951 ORTHO05D003675 7.0e-14 81.3 186 35.5
MSTRG.3245 Avicennia marina HOM05D001951 ORTHO05D003675 1.2e-13 80.5 197 36.5
Gorai.012G053300 Gossypium raimondii HOM05D001951 ORTHO05D003675 1.6e-13 80.1 176 36.9
THA.LOC104822357 Tarenaya hassleriana HOM05D001951 ORTHO05D003675 1.6e-13 80.1 178 36.5
AL3G11090 Arabidopsis lyrata HOM05D001951 ORTHO05D003675 2.0e-13 79.7 155 38.7
TWI60G1528 Tripterygium wilfordii HOM05D001951 ORTHO05D003675 2.0e-13 79.7 192 35.9
CARHR075880 Cardamine hirsuta HOM05D001951 ORTHO05D003675 3.5e-13 79.0 156 38.5
BcaB08g36909 Brassica carinata HOM05D001951 ORTHO05D003675 4.5e-13 78.6 175 36.0
Hma1.2p1_0240F.1_g100460 Hydrangea macrophylla HOM05D001951 ORTHO05D003675 4.5e-13 78.6 99 48.5
Hma1.2p1_0678F.1_g202080 Hydrangea macrophylla HOM05D001951 ORTHO05D003675 4.5e-13 78.6 99 48.5
AT3G01170 Arabidopsis thaliana HOM05D001951 ORTHO05D003675 5.9e-13 78.2 148 39.9
Gohir.A05G366800 Gossypium hirsutum HOM05D001951 ORTHO05D003675 5.9e-13 78.2 195 35.4
Gohir.D04G048300 Gossypium hirsutum HOM05D001951 ORTHO05D003675 5.9e-13 78.2 195 35.9
Gorai.012G053800 Gossypium raimondii HOM05D001951 ORTHO05D003675 5.9e-13 78.2 195 35.9
Eucgr.J01351 Eucalyptus grandis HOM05D001951 ORTHO05D003675 1.0e-12 77.4 176 33.5
Lsat_1_v5_gn_3_98961 Lactuca sativa HOM05D001951 ORTHO05D003675 1.0e-12 77.4 191 33.0
A05p44790 Brassica napus HOM05D001951 ORTHO05D003675 1.3e-12 77.0 155 35.5
BraA05t23178Z Brassica rapa HOM05D001951 ORTHO05D003675 1.3e-12 77.0 155 35.5
Gohir.D04G047900 Gossypium hirsutum HOM05D001951 ORTHO05D003675 1.3e-12 77.0 176 36.4
Sp3g00950 Schrenkiella parvula HOM05D001951 ORTHO05D003675 1.3e-12 77.0 150 38.7
C09p75380 Brassica napus HOM05D001951 ORTHO05D003675 1.7e-12 76.6 169 34.9
PSO832G1555 Papaver somniferum HOM05D001951 ORTHO05D003675 2.3e-12 76.3 175 37.1
TAR371G1283 Trochodendron aralioides HOM05D001951 ORTHO05D003675 2.3e-12 76.3 176 33.0
A10p23620 Brassica napus HOM05D001951 ORTHO05D003675 2.9e-12 75.9 184 34.8
Dinv11521 Davidia involucrata HOM05D001951 ORTHO05D003675 2.9e-12 75.9 167 35.9
Gohir.A05G367200 Gossypium hirsutum HOM05D001951 ORTHO05D003675 5.0e-12 75.1 195 34.9
Aa31LG5G12450 Aethionema arabicum HOM05D001951 ORTHO05D003675 6.6e-12 74.7 157 36.3
BraA10t44427Z Brassica rapa HOM05D001951 ORTHO05D003675 6.6e-12 74.7 175 35.4
Carub.0003s0099 Capsella rubella HOM05D001951 ORTHO05D003675 6.6e-12 74.7 155 37.4
Actinidia38787 Actinidia chinensis HOM05D001951 ORTHO05D003675 1.5e-11 73.6 78 52.6
Gorai.007G242600 Gossypium raimondii HOM05D001951 ORTHO05D003675 1.9e-11 73.2 139 37.4
BolC9t59024H Brassica oleracea HOM05D001951 ORTHO05D003675 2.5e-11 72.8 172 35.5
C09p61880 Brassica napus HOM05D001951 ORTHO05D003675 3.3e-11 72.4 172 35.5
unitig_32.g10748 Utricularia gibba HOM05D001951 ORTHO05D003675 5.6e-11 71.6 174 34.5
GSVIVG01011432001 Vitis vinifera HOM05D001951 ORTHO05D003675 5.6e-11 71.6 86 51.2
TAR374G1680 Trochodendron aralioides HOM05D001951 ORTHO05D003675 9.5e-11 70.9 131 36.6
BcaC04g18964 Brassica carinata HOM05D001951 ORTHO05D003675 1.6e-10 70.1 148 35.1
Actinidia38768 Actinidia chinensis HOM05D001951 ORTHO05D000038 8.0e-10 67.8 104 42.3
BcaC05g30488 Brassica carinata HOM05D001951 ORTHO05D003675 8.0e-10 67.8 152 39.5
SEGI_24439 Sequoiadendron giganteum HOM05D001951 ORTHO05D003675 1.0e-09 67.4 197 32.0
Rhsim10G0032900 Rhododendron simsii HOM05D001951 ORTHO05D003675 2.6e-08 62.8 72 48.6
Actinidia17552 Actinidia chinensis HOM05D001951 ORTHO05D003675 3.4e-08 62.4 78 43.6
Aa31LG11G14280 Aethionema arabicum HOM05D001951 ORTHO05D003675 3.4e-08 62.4 149 37.6
MBI05_g10778_MAGBIO Magnolia biondii HOM05D001951 ORTHO05D003675 9.8e-08 60.8 56 55.4
BolC9t59030H Brassica oleracea HOM05D001951 ORTHO05D003675 2.2e-07 59.7 57 52.6
ATR0068G031 Amborella trichopoda HOM05D001951 ORTHO05D003675 1.9e-06 56.6 189 32.3
C09p61900 Brassica napus HOM05D001951 ORTHO05D003675 3.2e-06 55.8 51 54.9
C03p08040 Brassica napus HOM05D001951 ORTHO05D003675 5.4e-06 55.1 176 31.2
A03p07060 Brassica napus HOM05D001951 ORTHO05D003675 7.0e-06 54.7 75 42.7
ECA246G2397 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.0e-06 54.7 73 39.7
BraA03t10028Z Brassica rapa HOM05D001951 ORTHO05D003675 9.2e-06 54.3 75 42.7


User provided reference genes

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