Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 7.2e-309 1063.5 740 100.0
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 1.1e-277 959.9 799 82.5
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 1.3e-241 840.1 818 72.5
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 4.1e-211 738.8 810 60.4
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 1.1e-203 714.1 810 59.9
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 8.8e-198 694.5 795 59.6
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 2.0e-170 603.6 796 50.8
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 3.5e-162 576.2 796 54.0
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 3.9e-161 572.8 797 57.1
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 1.8e-158 563.9 798 53.9
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 1.1e-155 554.7 509 62.3
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 2.1e-154 550.4 792 50.5
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 2.8e-151 540.0 821 51.3
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 5.2e-150 535.8 796 52.9
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 2.9e-148 530.0 805 49.9
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 3.8e-148 529.6 738 56.4
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 4.9e-148 529.3 801 52.6
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 4.2e-147 526.2 781 52.5
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 6.0e-146 522.3 796 50.5
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 1.0e-145 521.5 794 54.5
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 1.3e-145 521.2 809 49.9
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 1.5e-144 517.7 787 53.2
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 5.6e-144 515.8 797 54.8
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 1.1e-142 511.5 786 55.3
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 2.4e-142 510.4 815 45.6
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 4.0e-142 509.6 789 51.2
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 2.0e-141 507.3 774 51.8
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 2.6e-141 506.9 799 50.4
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 4.4e-141 506.1 796 51.0
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 5.8e-141 505.8 714 60.5
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 7.6e-141 505.4 757 56.8
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 2.2e-140 503.8 746 55.0
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 2.9e-140 503.4 804 52.0
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 4.9e-140 502.7 804 52.0
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 1.9e-139 500.7 746 54.6
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 3.2e-139 500.0 799 46.7
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 3.2e-139 500.0 805 51.7
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 3.2e-139 500.0 788 47.2
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 7.1e-139 498.8 772 47.4
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 9.3e-139 498.4 784 58.3
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 1.0e-137 495.0 787 51.2
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 3.0e-137 493.4 794 49.5
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 1.1e-136 491.5 802 51.1
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 8.1e-135 485.3 786 55.6
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 8.1e-135 485.3 786 55.6
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 1.1e-134 485.0 762 48.0
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 1.2e-133 481.5 772 51.8
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 5.4e-131 472.6 788 49.1
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 7.1e-131 472.2 761 50.5
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 2.7e-130 470.3 793 53.6
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.0e-129 468.4 798 48.6
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 1.0e-129 468.4 788 48.7
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.3e-129 468.0 802 50.7
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 1.8e-129 467.6 809 48.5
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 1.8e-129 467.6 803 50.2
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 1.8e-129 467.6 803 50.2
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 2.3e-129 467.2 809 50.2
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 3.0e-129 466.8 744 49.1
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 1.1e-128 464.9 787 49.9
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 1.3e-127 461.5 787 48.5
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 2.4e-126 457.2 795 55.5
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 2.4e-126 457.2 797 44.0
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 3.1e-126 456.8 797 47.8
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 4.0e-126 456.4 798 49.5
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 4.2e-123 446.4 852 44.8
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 5.5e-123 446.0 786 51.1
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 3.0e-121 440.3 788 44.5
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 3.7e-119 433.3 804 48.3
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 3.7e-119 433.3 786 46.8
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 4.8e-119 433.0 772 47.9
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 4.8e-119 433.0 810 46.0
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 1.8e-118 431.0 796 51.4
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 1.8e-118 431.0 806 52.2
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 2.0e-117 427.6 780 47.1
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 3.4e-117 426.8 526 51.5
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 1.7e-116 424.5 482 52.7
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 3.8e-116 423.3 798 42.5
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 4.9e-116 422.9 797 41.4
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 1.6e-114 417.9 759 49.1
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 1.8e-113 414.5 500 50.4
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 1.8e-113 414.5 500 50.4
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 2.5e-112 410.6 744 46.5
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 1.6e-111 407.9 749 46.1
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 1.6e-111 407.9 788 47.1
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 2.2e-111 407.5 796 47.2
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 9.4e-107 392.1 486 49.0
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 8.8e-105 385.6 762 42.7
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 2.0e-104 384.4 795 43.9
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 5.7e-104 382.9 791 47.0
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 6.9e-102 375.9 502 49.4
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 6.1e-98 362.8 792 40.7
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 1.5e-96 358.2 765 49.0
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 3.1e-94 350.5 836 41.9
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 7.7e-93 345.9 800 42.4
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 2.2e-92 344.4 784 50.6
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 2.8e-87 327.4 430 48.6
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 1.2e-85 322.0 763 36.6
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 4.2e-83 313.5 765 34.8
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 3.1e-78 297.4 802 37.2
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 1.4e-73 282.0 519 40.8
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 4.0e-73 280.4 527 39.1
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 7.5e-72 276.2 508 40.0
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 2.1e-58 231.5 546 46.0
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 2.3e-57 228.0 515 34.6
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 6.4e-55 219.9 546 45.1
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 3.9e-52 210.7 518 45.0
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 8.6e-52 209.5 264 47.7
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 7.3e-51 206.5 251 49.4
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 2.6e-48 198.0 516 33.9
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 1.5e-43 182.2 190 58.4
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 3.6e-42 177.6 203 52.2
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 6.8e-41 173.3 184 56.5
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 2.3e-36 158.3 375 54.1
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 3.1e-33 147.9 217 44.7
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-32 145.6 368 36.1
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.4e-30 139.0 132 61.4
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 1.1e-25 122.9 150 50.0
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 1.3e-23 115.9 136 52.2
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 4.9e-23 114.0 137 55.5
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 1.2e-21 109.4 165 46.7
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 1.2e-21 109.4 178 42.1
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 6.2e-18 97.1 113 52.2
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 6.9e-17 93.6 123 48.0
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 4.5e-16 90.9 81 59.3
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 2.1e-13 82.0 133 43.6
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 1.1e-11 76.3 152 36.8
Actinidia26547 Actinidia chinensis HOM05D001343 ORTHO05D007223 9.6e-11 73.2 148 37.8
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 9.6e-11 73.2 42 83.3
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 4.8e-10 70.9 42 83.3
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 8.1e-10 70.1 95 64.2
CDE06G1191 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 3.8e-07 61.2 89 42.7
RcHm_v2.0_Chr2g0097561 Rosa chinensis HOM05D001343 ORTHO05D007223 4.9e-07 60.8 47 70.2
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 6.5e-07 60.5 120 35.0


User provided reference genes

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