Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002966g0020 Nicotiana tabacum HOM05D008087 ORTHO05D010187 8.8e-154 547.0 286 100.0
PGSC0003DMG400013001 Solanum tuberosum HOM05D008087 ORTHO05D010187 4.9e-96 355.1 208 88.0
Solyc07g041770.1 Solanum lycopersicum HOM05D008087 ORTHO05D010187 1.3e-93 347.1 208 86.5
Sopen07g021260 Solanum pennellii HOM05D008087 ORTHO05D010187 8.6e-93 344.4 208 86.1
CSS0002060 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 1.9e-84 316.6 208 79.8
CSS0037579 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 2.8e-83 312.8 208 79.3
Hma1.2p1_0179F.1_g079550 Hydrangea macrophylla HOM05D008087 ORTHO05D010187 1.4e-82 310.5 207 78.7
TAR383G0588 Trochodendron aralioides HOM05D008087 ORTHO05D010187 1.8e-82 310.1 208 76.4
QL11p000704 Quercus lobata HOM05D008087 ORTHO05D010187 4.0e-82 308.9 208 78.4
MSTRG.19463 Avicennia marina HOM05D008087 ORTHO05D010187 6.9e-82 308.1 203 81.3
Cc06_g12130 Coffea canephora HOM05D008087 ORTHO05D010187 9.0e-82 307.8 208 77.4
Lj4P912T21 Lonicera japonica HOM05D008087 ORTHO05D010187 1.7e-80 303.5 209 77.0
Cfa002992 Carpinus fangiana HOM05D008087 ORTHO05D010187 2.2e-80 303.1 208 76.9
Ciclev10009482m.g Citrus clementina HOM05D008087 ORTHO05D010187 2.2e-80 303.1 208 76.9
TWI34G0776 Tripterygium wilfordii HOM05D008087 ORTHO05D010187 3.8e-80 302.4 208 75.0
Gorai.010G088200 Gossypium raimondii HOM05D008087 ORTHO05D010187 1.2e-78 297.4 208 76.4
DCAR_024749 Daucus carota HOM05D008087 ORTHO05D010187 1.6e-78 297.0 205 75.6
Manes.16G095600 Manihot esculenta HOM05D008087 ORTHO05D010187 2.7e-78 296.2 208 75.0
MD15G1217200 Malus domestica HOM05D008087 ORTHO05D010187 6.0e-78 295.0 211 74.4
Thecc.09G077500 Theobroma cacao HOM05D008087 ORTHO05D010187 1.0e-77 294.3 208 75.0
COL.COLO4_18101 Corchorus olitorius HOM05D008087 ORTHO05D010187 1.3e-77 293.9 208 76.0
Gohir.A06G076300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 1.3e-77 293.9 208 76.0
Gohir.D06G075300 Gossypium hirsutum HOM05D008087 ORTHO05D010187 2.3e-77 293.1 208 76.0
Prupe.7G199300 Prunus persica HOM05D008087 ORTHO05D010187 3.9e-77 292.4 211 74.4
GSVIVG01015086001 Vitis vinifera HOM05D004023 ORTHO05D004681 5.1e-77 292.0 200 77.0
CiPaw.03G206800 Carya illinoinensis HOM05D008087 ORTHO05D010187 8.7e-77 291.2 209 77.5
VMungo1215G2436 Vigna mungo HOM05D008087 ORTHO05D010187 8.7e-77 291.2 207 74.9
SalBow6G2426 Salvia bowleyana HOM05D008087 ORTHO05D010187 1.1e-76 290.8 205 75.1
Oeu049121.1 Olea europaea HOM05D008087 ORTHO05D010187 1.5e-76 290.4 206 75.2
Potri.018G065700 Populus trichocarpa HOM05D008087 ORTHO05D010187 4.3e-76 288.9 210 74.8
Sabra18G0058300 Salix brachista HOM05D008087 ORTHO05D010187 4.3e-76 288.9 210 74.3
Phvul.003G131000 Phaseolus vulgaris HOM05D008087 ORTHO05D010187 7.4e-76 288.1 207 74.4
Duzib168G2281 Durio zibethinus HOM05D008087 ORTHO05D010187 1.3e-75 287.3 208 74.0
Rhsim05G0007800 Rhododendron simsii HOM05D008087 ORTHO05D010187 2.1e-75 286.6 208 75.0
Glyma.13G110250 Glycine max HOM05D008087 ORTHO05D010187 6.2e-75 285.0 206 73.8
Lj4g0020355 Lotus japonicus HOM05D008087 ORTHO05D010187 1.2e-73 280.8 207 72.5
Cpa.g.sc28.44 Carica papaya HOM05D008087 ORTHO05D010187 2.0e-73 280.0 209 73.2
Nn8g38653 Nelumbo nucifera HOM05D008087 ORTHO05D010187 5.8e-73 278.5 208 71.6
Eucgr.C03187 Eucalyptus grandis HOM05D008087 ORTHO05D010187 1.7e-72 276.9 208 69.7
RcHm_v2.0_Chr2g0094891 Rosa chinensis HOM05D008087 ORTHO05D010187 1.7e-72 276.9 209 72.7
CANSAT56G3514 Cannabis sativa HOM05D008087 ORTHO05D010187 2.9e-72 276.2 211 71.1
Glyma.17G049450 Glycine max HOM05D008087 ORTHO05D010187 2.9e-72 276.2 206 71.8
Lalb_Chr07g0181171 Lupinus albus HOM05D008087 ORTHO05D010187 1.4e-71 273.9 207 70.5
PSO135G0253 Papaver somniferum HOM05D008087 ORTHO05D010187 1.6e-70 270.4 207 68.1
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 4.6e-70 268.9 181 76.8
Migut.J00928 Erythranthe guttata HOM05D008087 ORTHO05D010187 4.6e-70 268.9 198 75.3
arahy.Tifrunner.gnm1.ann1.TB6UZQ Arachis hypogaea HOM05D008087 ORTHO05D010187 3.0e-69 266.2 207 67.6
AUR62028937 Chenopodium quinoa HOM05D008087 ORTHO05D010187 9.6e-68 261.2 209 68.4
Psat4g017680 Pisum sativum HOM05D008087 ORTHO05D010187 9.6e-68 261.2 209 69.4
MBI19_g11825_MAGBIO Magnolia biondii HOM05D008087 ORTHO05D010187 3.7e-67 259.2 208 63.5
CSS0034066 Camellia sinensis var. sinensis HOM05D008087 ORTHO05D010187 4.8e-67 258.8 168 79.2
TPR.G12579 Trifolium pratense HOM05D008087 ORTHO05D010187 1.2e-65 254.2 207 67.1
Aqoxy1G01322 Aquilegia oxysepala HOM05D008087 ORTHO05D010187 1.0e-64 251.1 206 64.1
Medtr4g125370 Medicago truncatula HOM05D008087 ORTHO05D010187 1.9e-60 236.9 207 65.2
Duzib187G0811 Durio zibethinus HOM05D008087 ORTHO05D010187 3.7e-59 232.6 158 76.6
Eucgr.L02787 Eucalyptus grandis HOM05D008087 ORTHO05D010187 1.1e-58 231.1 208 62.5
Sc08g0008880 Simmondsia chinensis HOM05D008087 ORTHO05D010187 3.4e-57 226.1 208 61.1
Ca_21320_v3 Cicer arietinum L. HOM05D008087 ORTHO05D010187 1.2e-54 217.6 207 60.4
PGR044G2582 Punica granatum HOM05D008087 ORTHO05D010187 2.1e-54 216.9 208 59.1
Nitab4.5_0000343g0200 Nicotiana tabacum HOM05D008087 ORTHO05D010187 6.9e-50 201.8 105 98.1
Peaxi162Scf00127g00202 Petunia axillaris HOM05D008087 ORTHO05D010187 2.6e-49 199.9 105 96.2
Lsat_1_v5_gn_7_35101 Lactuca sativa HOM05D004023 ORTHO05D004681 4.5e-49 199.1 262 51.1
Ah.09g231600 Amaranthus hybridus HOM05D008087 ORTHO05D010187 1.0e-48 198.0 184 58.7
AL5G20930 Arabidopsis lyrata HOM05D008087 ORTHO05D010187 6.9e-42 175.3 200 51.0
AT3G42725 Arabidopsis thaliana HOM05D008087 ORTHO05D010187 2.2e-40 170.2 203 49.3
THA.LOC104811009 Tarenaya hassleriana HOM05D008087 ORTHO05D010187 4.1e-34 149.4 208 44.2
PSO724G0984 Papaver somniferum HOM05D008087 ORTHO05D010187 3.6e-30 136.3 105 66.7
PGR044G2297 Punica granatum HOM05D008087 ORTHO05D010187 1.2e-25 121.3 121 54.5
Zm00001eb005810 Zea mays HOM05D008087 ORTHO05D010187 4.5e-25 119.4 207 39.1
Ah.14g084950 Amaranthus hybridus HOM05D008087 ORTHO05D010187 8.5e-24 115.2 111 58.6
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 6.8e-21 105.5 102 52.9
MD15G1091800 Malus domestica HOM05D008087 ORTHO05D010187 1.5e-20 104.4 84 61.9
ATR0598G047 Amborella trichopoda HOM05D008087 ORTHO05D010187 7.5e-20 102.1 114 41.2
HPP92_026302 Vanilla planifolia HOM05D008087 ORTHO05D010187 2.4e-18 97.1 201 33.8
SMO358G0701 Selaginella moellendorffii HOM05D016812 ORTHO05D010187 1.6e-17 94.4 187 35.8
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 6.8e-13 79.0 54 72.2
Pp3c10_8870 Physcomitrium patens HOM05D016812 ORTHO05D024947 1.6e-09 67.8 191 28.3
Mapoly0038s0092 Marchantia polymorpha HOM05D016812 ORTHO05D010187 2.7e-09 67.0 188 30.9
Aa31LG4G13290 Aethionema arabicum HOM05D008087 ORTHO05D010187 7.8e-09 65.5 120 38.3
SEGI_14451 Sequoiadendron giganteum HOM05D003033 ORTHO05D003475 2.3e-08 63.9 180 30.6
Ciclev10030215m.g Citrus clementina HOM05D008087 ORTHO05D010187 2.9e-08 63.5 164 33.5
Mapoly0027s0146 Marchantia polymorpha HOM05D024607 ORTHO05D023555 6.1e-06 55.8 188 22.9


User provided reference genes

Program Settings