Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002963g0100 Nicotiana tabacum HOM05D004355 ORTHO05D005228 4.6e-253 877.5 463 100.0
Nitab4.5_0000101g0300 Nicotiana tabacum HOM05D004355 ORTHO05D005228 1.1e-209 733.4 416 92.1
PGSC0003DMG400035240 Solanum tuberosum HOM05D004355 ORTHO05D005228 5.0e-207 724.5 449 85.5
Sopen09g002770 Solanum pennellii HOM05D004355 ORTHO05D005228 1.7e-202 709.5 433 85.9
Solyc09g007950.3 Solanum lycopersicum HOM05D004355 ORTHO05D005228 4.8e-202 708.0 433 85.7
Cc06_g04030 Coffea canephora HOM05D004355 ORTHO05D005228 1.2e-157 560.5 459 62.5
Dinv35767 Davidia involucrata HOM05D004355 ORTHO05D003235 3.2e-153 545.8 458 62.0
Peaxi162Scf00123g01123 Petunia axillaris HOM05D004355 ORTHO05D005228 1.1e-150 537.3 445 67.0
SalBow5G3919 Salvia bowleyana HOM05D004355 ORTHO05D005228 3.3e-150 535.8 443 61.2
MSTRG.26701 Avicennia marina HOM05D004355 ORTHO05D005228 4.3e-150 535.4 450 60.4
SalBow5G3882 Salvia bowleyana HOM05D004355 ORTHO05D005228 7.3e-150 534.6 443 60.9
Migut.L01688 Erythranthe guttata HOM05D004355 ORTHO05D005228 5.8e-147 525.0 445 58.7
Hma1.2p1_1099F.1_g256870 Hydrangea macrophylla HOM05D004355 ORTHO05D005228 9.9e-147 524.2 450 58.9
SGA_v2.0_scaffold75G24855 Striga asiatica HOM05D004355 ORTHO05D005228 9.9e-147 524.2 452 60.4
DCAR_009301 Daucus carota HOM05D004355 ORTHO05D005228 1.1e-145 520.8 445 60.7
TWI77G0715 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 2.4e-145 519.6 471 56.7
CSS0012498 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 4.3e-142 508.8 447 58.6
Atru.chr8.1850 Acer truncatum HOM05D004355 ORTHO05D005228 1.2e-141 507.3 458 57.9
TWI74G0762 Tripterygium wilfordii HOM05D004355 ORTHO05D005228 3.6e-141 505.8 469 56.5
Potri.006G126600 Populus trichocarpa HOM05D004355 ORTHO05D005228 3.1e-140 502.7 457 54.5
CSS0041806 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 5.2e-140 501.9 461 56.8
CSS0033330 Camellia sinensis var. sinensis HOM05D004355 ORTHO05D005228 3.4e-139 499.2 463 56.4
Sabra06G0099700 Salix brachista HOM05D004355 ORTHO05D005228 4.4e-139 498.8 459 54.0
Cfa017577 Carpinus fangiana HOM05D004355 ORTHO05D005228 6.4e-138 495.0 460 56.3
CANSAT80G0576 Cannabis sativa HOM05D004355 ORTHO05D005228 1.4e-137 493.8 458 56.3
CiPaw.10G132700 Carya illinoinensis HOM05D004355 ORTHO05D005228 4.2e-137 492.3 458 55.7
Manes.08G008600 Manihot esculenta HOM05D004355 ORTHO05D005228 2.7e-136 489.6 464 55.0
Haze_20575 Corylus avellana HOM05D004355 ORTHO05D005228 6.0e-136 488.4 460 55.4
Potri.016G091400 Populus trichocarpa HOM05D004355 ORTHO05D005228 3.0e-135 486.1 456 54.8
Phvul.001G178100 Phaseolus vulgaris HOM05D004355 ORTHO05D005228 2.5e-134 483.0 456 55.3
Manes.09G063900 Manihot esculenta HOM05D004355 ORTHO05D005228 2.1e-133 479.9 460 54.6
Sed0019590 Sechium edule HOM05D004355 ORTHO05D005228 1.4e-132 477.2 459 55.3
MELO3C009345.2 Cucumis melo HOM05D004355 ORTHO05D005228 3.1e-132 476.1 460 54.3
CsaV3_3G035850 Cucumis sativus L. HOM05D004355 ORTHO05D005228 4.0e-132 475.7 460 54.6
Glyma.03G182000 Glycine max HOM05D004355 ORTHO05D005228 5.3e-132 475.3 455 55.4
Glyma.19G182500 Glycine max HOM05D004355 ORTHO05D005228 1.2e-131 474.2 456 55.0
HanXRQChr11g0350251 Helianthus annuus HOM05D004355 ORTHO05D005228 7.6e-131 471.5 431 55.2
VMungo1383G3555 Vigna mungo HOM05D004355 ORTHO05D005228 7.6e-131 471.5 459 54.2
Lalb_Chr01g0018741 Lupinus albus HOM05D004355 ORTHO05D005228 1.3e-130 470.7 472 53.6
Lj1g0007988 Lotus japonicus HOM05D004355 ORTHO05D005228 1.7e-130 470.3 454 54.8
QL07p044062 Quercus lobata HOM05D004355 ORTHO05D005228 3.8e-130 469.2 480 52.1
Cpa.g.sc92.114 Carica papaya HOM05D004355 ORTHO05D005228 1.5e-126 457.2 463 52.3
Sc02g0001740 Simmondsia chinensis HOM05D004355 ORTHO05D005228 2.5e-126 456.4 448 54.2
PGR004G0459 Punica granatum HOM05D004355 ORTHO05D005228 5.6e-126 455.3 451 53.4
Thecc.05G062900 Theobroma cacao HOM05D004355 ORTHO05D005228 1.3e-125 454.1 443 54.2
ClCG10G020240 Citrullus lanatus HOM05D004355 ORTHO05D005228 1.6e-125 453.8 445 53.7
Lalb_Chr25g0289061 Lupinus albus HOM05D004355 ORTHO05D005228 1.1e-124 451.1 461 53.1
Ciclev10011674m.g Citrus clementina HOM05D004355 ORTHO05D005228 9.0e-124 448.0 451 53.4
COL.COLO4_26990 Corchorus olitorius HOM05D004355 ORTHO05D005228 2.0e-123 446.8 443 52.6
unitig_899.g15220 Utricularia gibba HOM05D002910 ORTHO05D003235 2.0e-123 446.8 444 53.2
AUR62039881 Chenopodium quinoa HOM05D004355 ORTHO05D005228 2.6e-123 446.4 444 53.4
Gohir.A09G148600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 5.8e-123 445.3 443 52.6
Gorai.006G165700 Gossypium raimondii HOM05D004355 ORTHO05D005228 5.8e-123 445.3 443 52.6
Gohir.D09G144400 Gossypium hirsutum HOM05D004355 ORTHO05D005228 1.7e-122 443.7 443 52.4
vmacro08776 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 6.4e-122 441.8 511 49.9
Duzib093G1016 Durio zibethinus HOM05D004355 ORTHO05D005228 1.1e-121 441.0 441 52.8
Duzib128G1889 Durio zibethinus HOM05D004355 ORTHO05D005228 1.1e-121 441.0 443 53.3
Duzib106G0643 Durio zibethinus HOM05D004355 ORTHO05D005228 1.9e-121 440.3 443 51.5
Migut.J00528 Erythranthe guttata HOM05D004355 ORTHO05D005228 5.5e-121 438.7 447 52.8
unitig_746.g26764 Utricularia gibba HOM05D004355 ORTHO05D005228 1.2e-120 437.6 447 52.8
TAR633G2000 Trochodendron aralioides HOM05D004355 ORTHO05D005228 2.1e-120 436.8 454 52.4
FAN05G2251 Fragaria x ananassa HOM05D004355 ORTHO05D005228 6.0e-120 435.3 437 55.4
Gorai.009G416200 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.1e-118 431.0 441 50.3
Gohir.A04G073200 Gossypium hirsutum HOM05D004355 ORTHO05D005228 2.5e-118 429.9 441 50.6
MELO3C014220.2 Cucumis melo HOM05D004355 ORTHO05D005228 4.3e-118 429.1 456 50.0
Gohir.D04G112100 Gossypium hirsutum HOM05D004355 ORTHO05D005228 5.6e-118 428.7 441 50.1
CsaV3_6G039740 Cucumis sativus L. HOM05D004355 ORTHO05D005228 7.4e-118 428.3 458 50.4
FAN02G3539 Fragaria x ananassa HOM05D004355 ORTHO05D005228 7.4e-118 428.3 446 53.1
FvH4_6g16100 Fragaria vesca HOM05D004355 ORTHO05D005228 4.8e-117 425.6 448 54.0
MD04G1095900 Malus domestica HOM05D004355 ORTHO05D005228 1.4e-116 424.1 450 52.4
TAR636G0816 Trochodendron aralioides HOM05D004355 ORTHO05D005228 3.1e-116 422.9 450 51.8
Ca_08851_v3 Cicer arietinum L. HOM05D004355 ORTHO05D005228 5.3e-116 422.2 468 47.0
Prupe.6G235000 Prunus persica HOM05D004355 ORTHO05D005228 9.0e-116 421.4 447 52.6
Medtr7g101730 Medicago truncatula HOM05D004355 ORTHO05D005228 3.4e-115 419.5 474 47.3
TAR369G0267 Trochodendron aralioides HOM05D004355 ORTHO05D005228 5.8e-115 418.7 446 50.2
Psat3g043400 Pisum sativum HOM05D004355 ORTHO05D005228 1.0e-114 417.9 465 47.7
vmacro20020 Vaccinium macrocarpon HOM05D004355 ORTHO05D005228 1.0e-114 417.9 462 51.9
ClCG04G009160 Citrullus lanatus HOM05D004355 ORTHO05D005228 1.3e-114 417.5 458 49.8
THA.LOC104823460 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 2.2e-114 416.8 460 49.6
Rhsim05G0179400 Rhododendron simsii HOM05D004355 ORTHO05D005228 8.4e-114 414.8 450 51.8
ECA248G2910 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.1e-113 414.5 436 51.8
Nn2g13729 Nelumbo nucifera HOM05D004355 ORTHO05D005228 1.1e-113 414.5 453 50.1
AL4G33360 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 1.4e-113 414.1 456 49.1
ECA233G2716 Erigeron canadensis HOM05D004355 ORTHO05D005228 4.2e-113 412.5 433 49.0
PSO339G4715 Papaver somniferum HOM05D004355 ORTHO05D005228 5.5e-113 412.1 465 48.4
Ah.08g211740 Amaranthus hybridus HOM05D004355 ORTHO05D005228 4.6e-112 409.1 445 47.4
Gohir.D01G128600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 4.6e-112 409.1 442 50.2
Aa31LG5G22300 Aethionema arabicum HOM05D004355 ORTHO05D005228 6.0e-112 408.7 457 48.6
THA.LOC104806491 Tarenaya hassleriana HOM05D004355 ORTHO05D005228 6.0e-112 408.7 461 48.2
TPR.G9373 Trifolium pratense HOM05D004355 ORTHO05D005228 2.3e-111 406.8 478 46.2
Dinv37299 Davidia involucrata HOM05D004355 ORTHO05D005228 8.7e-111 404.8 340 60.0
Rhsim04G0145100 Rhododendron simsii HOM05D004355 ORTHO05D005228 4.3e-110 402.5 578 43.1
HanXRQChr13g0399881 Helianthus annuus HOM05D004355 ORTHO05D005228 7.4e-110 401.7 453 49.0
Gohir.A01G139600 Gossypium hirsutum HOM05D004355 ORTHO05D005228 9.6e-110 401.4 444 49.5
EL10Ac7g16576 Beta vulgaris HOM05D004355 ORTHO05D005228 1.4e-108 397.5 434 49.3
A05p08800 Brassica napus HOM05D004355 ORTHO05D005228 2.6e-107 393.3 451 47.2
BraA05t19847Z Brassica rapa HOM05D004355 ORTHO05D005228 1.3e-106 391.0 453 47.0
Sabra16G0096600 Salix brachista HOM05D004355 ORTHO05D005228 1.7e-106 390.6 605 38.3
Lsat_1_v5_gn_1_53141 Lactuca sativa HOM05D004355 ORTHO05D005228 5.0e-106 389.0 429 49.9
BcaC02g11829 Brassica carinata HOM05D004355 ORTHO05D005228 1.1e-105 387.9 454 47.4
BolC4t22685H Brassica oleracea HOM05D004355 ORTHO05D005228 4.2e-105 386.0 454 46.9
C04p10920 Brassica napus HOM05D004355 ORTHO05D005228 5.5e-105 385.6 454 47.1
Actinidia19660 Actinidia chinensis HOM05D004355 ORTHO05D005228 9.3e-105 384.8 440 50.5
Sp4g19340 Schrenkiella parvula HOM05D004355 ORTHO05D005228 5.3e-100 369.0 460 45.2
AT2G37035 Arabidopsis thaliana HOM05D004355 ORTHO05D005228 5.9e-99 365.5 456 46.5
Carub.0004s1891 Capsella rubella HOM05D004355 ORTHO05D005228 2.2e-98 363.6 459 46.0
Aqoxy1G01202 Aquilegia oxysepala HOM05D004355 ORTHO05D005228 1.4e-97 360.9 453 47.5
CARHR131530 Cardamine hirsuta HOM05D004355 ORTHO05D005228 1.2e-96 357.8 454 45.6
Gorai.002G162400 Gossypium raimondii HOM05D004355 ORTHO05D005228 1.8e-95 354.0 386 49.5
PGR004G2422 Punica granatum HOM05D004355 ORTHO05D005228 2.3e-95 353.6 442 46.2
Sed0012541 Sechium edule HOM05D004355 ORTHO05D005228 4.4e-94 349.4 417 47.2
AUR62040465 Chenopodium quinoa HOM05D004355 ORTHO05D005228 2.8e-93 346.7 275 58.9
Eucgr.A01137 Eucalyptus grandis HOM05D004355 ORTHO05D005228 2.4e-92 343.6 267 61.8
Lsat_1_v5_gn_6_31260 Lactuca sativa HOM05D004355 ORTHO05D005228 6.9e-92 342.0 434 45.4
FAN14G0897 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.2e-88 331.3 263 61.2
FAN14G5907 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.2e-88 331.3 263 61.2
Lj2P114T36 Lonicera japonica HOM05D004355 ORTHO05D005228 1.8e-87 327.4 265 63.0
RcHm_v2.0_Chr3g0469941 Rosa chinensis HOM05D004355 ORTHO05D005228 9.7e-86 321.6 256 60.5
FAN09G2012 Fragaria x ananassa HOM05D004355 ORTHO05D005228 8.2e-77 292.0 343 49.9
Lsat_1_v5_gn_6_31300 Lactuca sativa HOM05D004355 ORTHO05D005228 4.1e-76 289.7 444 38.3
GSVIVG01025706001 Vitis vinifera HOM05D004355 ORTHO05D005228 5.3e-76 289.3 263 57.4
Lsat_1_v5_gn_6_31200 Lactuca sativa HOM05D004355 ORTHO05D005228 3.8e-74 283.1 427 40.5
MD12G1115900 Malus domestica HOM05D004355 ORTHO05D005228 2.7e-72 276.9 450 40.4
Lsat_1_v5_gn_6_70860 Lactuca sativa HOM05D004355 ORTHO05D005228 7.5e-70 268.9 414 39.9
CiPaw.09G174200 Carya illinoinensis HOM05D004355 ORTHO05D005228 2.5e-65 253.8 433 39.3
Os10g0478400 Oryza sativa ssp. japonica HOM05D004355 ORTHO05D005228 8.0e-48 195.7 433 34.4
Zm00001eb221710 Zea mays HOM05D004355 ORTHO05D005228 1.5e-46 191.4 431 33.6
ATR0048G009 Amborella trichopoda HOM05D004355 ORTHO05D005228 7.0e-44 182.6 461 31.2
Zm00001eb045770 Zea mays HOM05D004355 ORTHO05D005228 2.0e-43 181.0 259 39.4
ECA233G2161 Erigeron canadensis HOM05D004355 ORTHO05D005228 4.6e-43 179.9 444 31.8
ECA233G2931 Erigeron canadensis HOM05D004355 ORTHO05D005228 1.7e-42 177.9 215 40.9
CDE06G0791 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 2.3e-42 177.6 301 39.5
Dinv34489 Davidia involucrata HOM05D004355 ORTHO05D005228 1.1e-41 175.3 215 48.4
Dinv23629 Davidia involucrata HOM05D004355 ORTHO05D005228 7.3e-41 172.6 215 48.4
CDE04G2254 Ceratophyllum demersum HOM05D004355 ORTHO05D005228 2.8e-40 170.6 319 37.3
Oeu045216.1 Olea europaea HOM05D004355 ORTHO05D005228 1.5e-38 164.9 436 29.4
Oeu045215.1 Olea europaea HOM05D004355 ORTHO05D005228 3.7e-37 160.2 418 31.6
Nn2g11520 Nelumbo nucifera HOM05D004355 ORTHO05D005228 4.1e-36 156.8 216 44.9
Actinidia31337 Actinidia chinensis HOM05D004355 ORTHO05D005228 7.1e-36 156.0 136 52.2
VMungo0540G2091 Vigna mungo HOM05D004355 ORTHO05D005228 9.2e-36 155.6 116 62.1
ECA233G3839 Erigeron canadensis HOM05D004355 ORTHO05D005228 5.8e-30 136.3 248 35.9
FAN09G2758 Fragaria x ananassa HOM05D004355 ORTHO05D005228 4.6e-27 126.7 106 58.5
BcaB02g09308 Brassica carinata HOM05D004355 ORTHO05D005228 1.5e-25 121.7 161 44.1
Oeu045217.1 Olea europaea HOM05D004355 ORTHO05D005228 3.6e-24 117.1 238 32.8
PSO801G0805 Papaver somniferum HOM05D004355 ORTHO05D005228 3.6e-24 117.1 212 39.2
Dinv15971 Davidia involucrata HOM05D004355 ORTHO05D005228 6.9e-23 112.8 132 48.5
Dinv18225 Davidia involucrata HOM05D004355 ORTHO05D005228 6.9e-23 112.8 132 48.5
Dinv07786 Davidia involucrata HOM05D004355 ORTHO05D005228 2.9e-21 107.5 87 60.9
Sc02g0001720 Simmondsia chinensis HOM05D004355 ORTHO05D005228 6.6e-18 96.3 99 46.5
FAN03G0487 Fragaria x ananassa HOM05D004355 ORTHO05D005228 5.6e-17 93.2 104 54.8
AL693U10010 Arabidopsis lyrata HOM05D004355 ORTHO05D005228 9.6e-17 92.4 130 45.4
SEGI_02022 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 9.6e-17 92.4 192 29.2
FAN05G3868 Fragaria x ananassa HOM05D004355 ORTHO05D005228 8.1e-16 89.4 140 47.1
HPP92_015190 Vanilla planifolia HOM05D004355 ORTHO05D005228 5.3e-15 86.7 122 37.7
FAN26G1787 Fragaria x ananassa HOM05D004355 ORTHO05D005228 6.9e-15 86.3 105 48.6
SEGI_31737 Sequoiadendron giganteum HOM05D004355 ORTHO05D005228 9.9e-14 82.4 242 25.6
FAN06G3154 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.0e-10 72.4 60 61.7
FAN06G2627 Fragaria x ananassa HOM05D004355 ORTHO05D005228 8.7e-10 69.3 60 60.0
FAN18G3656 Fragaria x ananassa HOM05D004355 ORTHO05D005228 1.1e-09 68.9 60 58.3
FAN05G5296 Fragaria x ananassa HOM05D004355 ORTHO05D005228 3.3e-09 67.4 60 58.3
Haze_04707 Corylus avellana HOM05D006763 ORTHO05D008659 5.8e-06 56.6 87 43.7
Psat2g063600 Pisum sativum HOM05D004355 ORTHO05D005228 7.6e-06 56.2 67 44.8


User provided reference genes

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