Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.2e-51 203.8 97 100.0
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.8e-48 194.5 97 94.8
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 1.5e-25 119.4 96 62.5
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 4.6e-14 81.3 93 44.1
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 3.0e-13 78.6 97 42.3
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 5.1e-13 77.8 91 38.5
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 5.1e-13 77.8 93 41.9
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 6.7e-13 77.4 91 37.4
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 6.7e-13 77.4 82 39.0
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 8.7e-13 77.0 91 37.4
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 8.7e-13 77.0 99 37.4
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 8.7e-13 77.0 96 42.7
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.1e-12 76.6 81 40.7
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.5e-12 76.3 87 34.5
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.5e-12 76.3 81 40.7
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 1.9e-12 75.9 85 36.5
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.5e-12 75.5 90 36.7
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.3e-12 75.1 86 41.9
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 4.3e-12 74.7 94 40.4
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 4.3e-12 74.7 99 37.4
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 5.7e-12 74.3 90 35.6
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 7.4e-12 73.9 92 37.0
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 9.7e-12 73.6 86 37.2
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.7e-12 73.6 86 37.2
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 9.7e-12 73.6 87 37.9
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.3e-11 73.2 87 37.9
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 1.6e-11 72.8 95 38.9
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.6e-11 72.8 86 37.2
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.6e-11 72.8 92 38.0
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.6e-11 72.8 87 37.9
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 1.6e-11 72.8 84 46.4
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 2.2e-11 72.4 94 38.3
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.8e-11 72.0 92 40.2
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 4.8e-11 71.2 85 43.5
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 4.8e-11 71.2 80 40.0
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 6.3e-11 70.9 94 39.4
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 6.3e-11 70.9 82 34.1
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 6.3e-11 70.9 96 39.6
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 6.3e-11 70.9 80 41.2
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 8.2e-11 70.5 93 37.6
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.2e-11 70.5 81 35.8
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.2e-11 70.5 81 35.8
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.1e-10 70.1 86 37.2
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 1.1e-10 70.1 84 45.2
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 1.4e-10 69.7 85 36.5
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 1.4e-10 69.7 94 36.2
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.8e-10 69.3 57 45.6
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 1.8e-10 69.3 103 33.0
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 2.4e-10 68.9 82 35.4
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.1e-10 68.6 86 38.4
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 3.1e-10 68.6 86 36.0
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 3.1e-10 68.6 84 36.9
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 4.1e-10 68.2 84 36.9
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 4.1e-10 68.2 81 39.5
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 4.1e-10 68.2 99 38.4
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 4.1e-10 68.2 80 35.0
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 4.1e-10 68.2 57 47.4
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 4.1e-10 68.2 81 33.3
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 5.3e-10 67.8 81 39.5
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 5.3e-10 67.8 81 39.5
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 5.3e-10 67.8 91 34.1
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 5.3e-10 67.8 83 36.1
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.3e-10 67.8 81 44.4
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.3e-10 67.8 80 38.8
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 6.9e-10 67.4 81 44.4
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 6.9e-10 67.4 93 35.5
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 1.2e-09 66.6 97 37.1
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.2e-09 66.6 80 36.2
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 1.5e-09 66.2 84 35.7
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 1.5e-09 66.2 85 40.0
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 1.5e-09 66.2 52 46.2
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.5e-09 66.2 86 36.0
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 1.5e-09 66.2 81 39.5
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 1.5e-09 66.2 84 34.5
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 2.0e-09 65.9 95 37.9
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 2.0e-09 65.9 86 32.6
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.6e-09 65.5 54 51.9
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 3.4e-09 65.1 92 31.5
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.4e-09 65.1 82 35.4
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 3.4e-09 65.1 81 37.0
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 3.4e-09 65.1 91 33.0
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.5e-09 64.7 85 34.1
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 4.5e-09 64.7 83 34.9
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 5.9e-09 64.3 82 39.0
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.9e-09 64.3 81 35.8
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 5.9e-09 64.3 92 34.8
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 5.9e-09 64.3 92 34.8
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 5.9e-09 64.3 81 37.0
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 5.9e-09 64.3 81 37.0
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 5.9e-09 64.3 93 35.5
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 5.9e-09 64.3 82 34.1
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 7.6e-09 63.9 85 40.0
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 7.6e-09 63.9 81 35.8
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 7.6e-09 63.9 83 33.7
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 1.0e-08 63.5 81 35.8
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 1.0e-08 63.5 84 35.7
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 1.3e-08 63.2 94 29.8
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 1.3e-08 63.2 92 32.6
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.3e-08 63.2 79 36.7
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 1.3e-08 63.2 84 32.1
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.7e-08 62.8 84 40.5
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 2.2e-08 62.4 52 44.2
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 2.2e-08 62.4 93 34.4
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 2.2e-08 62.4 93 34.4
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 2.2e-08 62.4 82 37.8
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 2.9e-08 62.0 99 32.3
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.9e-08 62.0 95 34.7
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 2.9e-08 62.0 82 36.6
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 3.8e-08 61.6 83 32.5
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 3.8e-08 61.6 51 41.2
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.8e-08 61.6 79 32.9
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 3.8e-08 61.6 95 35.8
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 5.0e-08 61.2 83 37.3
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 5.0e-08 61.2 80 40.0
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 5.0e-08 61.2 80 33.8
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 6.5e-08 60.8 94 34.0
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 8.5e-08 60.5 52 46.2
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 8.5e-08 60.5 81 34.6
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 8.5e-08 60.5 79 36.7
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 8.5e-08 60.5 52 50.0
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 8.5e-08 60.5 84 29.8
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.5e-08 60.5 49 42.9
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 8.5e-08 60.5 51 49.0
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 8.5e-08 60.5 82 35.4
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 8.5e-08 60.5 81 34.6
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 1.1e-07 60.1 53 43.4
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.1e-07 60.1 84 28.6
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 1.1e-07 60.1 90 28.9
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 1.1e-07 60.1 90 31.1
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.4e-07 59.7 52 44.2
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 1.4e-07 59.7 93 33.3
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 1.9e-07 59.3 78 34.6
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 1.9e-07 59.3 54 40.7
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 2.5e-07 58.9 51 39.2
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.5e-07 58.9 53 45.3
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 2.5e-07 58.9 52 40.4
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 3.2e-07 58.5 52 42.3
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 3.2e-07 58.5 52 42.3
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.2e-07 58.5 79 31.6
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.2e-07 58.5 52 48.1
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 4.2e-07 58.2 51 43.1
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.2e-07 58.2 50 40.0
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 4.2e-07 58.2 50 42.0
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 4.2e-07 58.2 50 42.0
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.5e-07 57.8 52 38.5
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 5.5e-07 57.8 51 39.2
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 5.5e-07 57.8 51 39.2
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 5.5e-07 57.8 84 31.0
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 7.2e-07 57.4 50 42.0
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.2e-07 57.4 52 42.3
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 7.2e-07 57.4 51 39.2
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 7.2e-07 57.4 84 32.1
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 9.3e-07 57.0 50 42.0
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 9.3e-07 57.0 50 38.0
MBI18_g37563_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 9.3e-07 57.0 52 44.2
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 1.2e-06 56.6 52 42.3
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 1.2e-06 56.6 79 32.9
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 1.2e-06 56.6 78 32.1
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 1.2e-06 56.6 86 30.2
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 1.2e-06 56.6 51 39.2
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.1e-06 55.8 50 42.0
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.1e-06 55.8 50 42.0
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 2.1e-06 55.8 50 40.0
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 2.7e-06 55.5 52 40.4
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 3.6e-06 55.1 84 26.2
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 3.6e-06 55.1 49 42.9
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 4.6e-06 54.7 44 40.9
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 4.6e-06 54.7 47 38.3
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.6e-06 54.7 52 42.3
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 6.1e-06 54.3 52 42.3
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 7.9e-06 53.9 50 38.0


User provided reference genes

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