Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 0.0e+00 1701.8 864 100.0
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 0.0e+00 1301.6 842 83.5
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 0.0e+00 1265.8 815 83.2
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 0.0e+00 1212.2 817 80.3
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 0.0e+00 1083.6 845 71.7
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 0.0e+00 1079.7 845 71.5
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 5.0e-301 1037.7 846 70.2
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 4.1e-287 991.5 846 67.4
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 1.4e-191 674.1 908 48.7
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 1.8e-181 640.6 867 47.4
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 1.9e-175 620.5 843 47.6
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 4.5e-169 599.4 885 45.3
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 3.6e-166 589.7 886 45.3
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.6e-166 589.7 359 85.8
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 9.1e-162 575.1 876 45.1
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 1.1e-159 568.2 867 45.2
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 2.3e-157 560.5 892 44.1
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 5.2e-157 559.3 874 43.6
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 1.2e-156 558.1 889 44.4
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 2.0e-156 557.4 892 43.8
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 1.3e-155 554.7 892 43.8
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 3.1e-154 550.1 886 43.6
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 2.0e-153 547.4 870 43.9
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 2.0e-153 547.4 886 43.5
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 1.3e-152 544.7 914 43.1
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 2.2e-152 543.9 876 44.5
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 2.5e-151 540.4 863 43.2
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 2.1e-150 537.3 816 45.1
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 6.1e-150 535.8 871 42.8
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 1.2e-148 531.6 920 42.9
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 1.5e-148 531.2 873 42.5
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 2.6e-148 530.4 867 41.5
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 7.5e-148 528.9 900 43.1
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 8.3e-147 525.4 847 44.3
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 1.4e-146 524.6 893 42.9
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 8.6e-144 515.4 835 42.4
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 1.9e-143 514.2 888 40.8
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 3.3e-143 513.5 873 41.5
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 4.0e-141 506.5 850 41.4
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 5.2e-141 506.1 860 41.7
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 4.4e-140 503.1 851 41.4
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.7e-139 501.1 861 41.6
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 1.7e-139 501.1 873 41.4
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 2.2e-139 500.7 880 40.5
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 2.8e-139 500.4 832 41.8
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 1.4e-138 498.0 823 41.7
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 2.4e-138 497.3 838 43.6
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 4.1e-138 496.5 868 41.0
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 5.4e-138 496.1 841 41.4
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 5.9e-137 492.7 876 39.6
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 7.8e-137 492.3 882 41.2
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 7.8e-137 492.3 882 41.7
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 1.5e-135 488.0 838 41.3
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 1.6e-134 484.6 871 41.2
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 4.7e-134 483.0 874 40.3
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 1.3e-131 474.9 903 38.6
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 8.3e-131 472.2 872 40.4
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 1.1e-130 471.9 868 38.9
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 1.6e-129 468.0 867 38.4
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 1.6e-129 468.0 837 41.8
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 3.5e-129 466.8 858 39.7
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 1.1e-127 461.8 798 41.6
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 4.3e-127 459.9 860 39.5
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 5.6e-127 459.5 876 40.1
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 9.5e-127 458.8 850 39.5
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 1.2e-121 441.8 836 39.4
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 1.3e-120 438.3 867 39.3
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 3.9e-120 436.8 863 37.8
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 1.9e-119 434.5 834 39.1
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 4.3e-119 433.3 803 40.1
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 5.6e-119 433.0 874 38.9
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 3.6e-118 430.3 912 37.3
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 4.7e-118 429.9 822 39.5
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 6.2e-118 429.5 819 39.6
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 1.1e-117 428.7 844 39.6
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 4.4e-116 423.3 827 38.9
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 1.0e-112 412.1 877 36.6
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 2.1e-110 404.4 884 37.0
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 1.8e-109 401.4 718 41.8
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 7.6e-108 396.0 864 36.9
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 3.8e-107 393.7 859 37.1
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 8.4e-107 392.5 888 37.3
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 7.1e-106 389.4 836 38.4
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 1.2e-102 378.6 838 36.8
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 4.7e-102 376.7 844 37.2
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 7.6e-100 369.4 214 89.3
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 7.1e-98 362.8 829 35.9
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 7.1e-98 362.8 842 36.9
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 2.7e-97 360.9 829 35.8
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 1.0e-96 359.0 878 35.5
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 2.3e-96 357.8 901 34.7
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 8.7e-96 355.9 823 36.1
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 1.1e-95 355.5 823 36.1
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 5.8e-92 343.2 832 34.5
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 7.6e-92 342.8 804 36.2
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 1.2e-89 335.5 1042 32.0
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 5.1e-88 330.1 919 33.0
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 1.9e-87 328.2 858 33.0
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 1.6e-86 325.1 825 34.2
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 1.8e-85 321.6 877 34.0
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 6.9e-85 319.7 893 33.1
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 3.8e-83 313.9 564 39.5
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 2.8e-78 297.7 878 33.4
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 2.4e-77 294.7 503 41.0
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 1.5e-76 292.0 592 37.7
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 6.3e-70 270.0 448 43.5
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 9.4e-66 256.1 285 51.6
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 1.1e-63 249.2 580 36.6
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 4.3e-63 247.3 317 48.3
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 8.5e-59 233.0 223 57.8
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 1.4e-53 215.7 225 53.8
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 3.8e-51 207.6 173 61.3
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 8.0e-49 199.9 181 58.6
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 2.3e-48 198.4 181 58.0
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 1.5e-39 169.1 493 32.5
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 7.5e-39 166.8 156 58.3
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 8.3e-38 163.3 181 50.8
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 3.5e-36 157.9 148 56.8
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 1.0e-35 156.4 179 50.3
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 3.8e-35 154.5 373 35.1
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 1.1e-34 152.9 199 45.7
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 8.8e-32 143.3 159 50.9
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 2.6e-31 141.7 258 37.6
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 1.6e-28 132.5 390 30.0
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 5.5e-26 124.0 482 27.8
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 7.2e-26 123.6 190 40.5
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 2.8e-25 121.7 200 39.0
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 2.6e-23 115.2 465 29.2
Potri.004G015001 Populus trichocarpa HOM05D002890 ORTHO05D005855 3.1e-21 108.2 166 44.0
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 5.0e-19 100.9 792 24.7
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 2.5e-18 98.6 374 31.6
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 2.4e-13 82.0 116 44.8
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 2.4e-13 82.0 68 58.8
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 1.3e-11 76.3 150 34.7
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 3.6e-09 68.2 320 23.8


User provided reference genes

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