Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002954g0040 Nicotiana tabacum HOM05D001530 ORTHO05D004168 1.1e-121 439.9 213 100.0
Nitab4.5_0001247g0020 Nicotiana tabacum HOM05D001530 ORTHO05D004168 1.6e-107 392.9 200 94.5
Nitab4.5_0000267g0040 Nicotiana tabacum HOM05D001530 ORTHO05D004168 1.1e-100 370.2 200 89.0
Nitab4.5_0000267g0060 Nicotiana tabacum HOM05D001530 ORTHO05D004168 1.9e-100 369.4 201 91.0
Nitab4.5_0001247g0070 Nicotiana tabacum HOM05D001530 ORTHO05D004168 1.1e-95 353.6 200 86.5
Sopen01g031910 Solanum pennellii HOM05D001530 ORTHO05D004168 3.1e-87 325.5 200 79.5
Solyc01g080130.2 Solanum lycopersicum HOM05D001530 ORTHO05D004168 5.3e-87 324.7 200 79.5
PGSC0003DMG400033109 Solanum tuberosum HOM05D001530 ORTHO05D004168 2.0e-86 322.8 200 79.0
CAN.G183.29 Capsicum annuum HOM05D001530 ORTHO05D004168 1.0e-77 293.9 201 73.1
CAN.G183.25 Capsicum annuum HOM05D001530 ORTHO05D004168 4.6e-67 258.5 202 68.3
Peaxi162Scf00196g00108 Petunia axillaris HOM05D001530 ORTHO05D004168 8.8e-66 254.2 204 64.7
Oeu060376.2 Olea europaea HOM05D001530 ORTHO05D004168 1.1e-49 200.7 204 50.0
MSTRG.3991 Avicennia marina HOM05D001530 ORTHO05D004168 1.1e-44 184.1 198 49.0
Solyc01g080120.2 Solanum lycopersicum HOM05D001530 ORTHO05D004168 1.5e-44 183.7 176 58.0
MSTRG.21830 Avicennia marina HOM05D001530 ORTHO05D004168 2.7e-43 179.5 203 47.8
Cc03_g03110 Coffea canephora HOM05D001530 ORTHO05D004168 5.2e-42 175.3 208 45.2
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 3.1e-39 166.0 208 44.7
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 2.7e-38 162.9 204 43.1
Sopen01g031900 Solanum pennellii HOM05D001530 ORTHO05D004168 1.3e-37 160.6 106 75.5
Migut.G00289 Erythranthe guttata HOM05D001530 ORTHO05D004168 2.9e-37 159.5 197 42.1
SGA_v2.0_scaffold166G38375 Striga asiatica HOM05D001530 ORTHO05D004168 1.6e-35 153.7 211 42.2
CSS0015016 Camellia sinensis var. sinensis HOM05D001530 ORTHO05D004168 4.7e-35 152.1 201 40.8
Thecc.04G221500 Theobroma cacao HOM05D001530 ORTHO05D004168 8.0e-35 151.4 200 40.5
SalBow5G2333 Salvia bowleyana HOM05D001530 ORTHO05D004168 1.4e-34 150.6 269 36.4
SalBow5G3989 Salvia bowleyana HOM05D001530 ORTHO05D004168 1.4e-34 150.6 269 36.4
SalBow2G1103 Salvia bowleyana HOM05D001530 ORTHO05D004168 2.6e-33 146.4 196 41.8
THA.LOC104802744 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 2.6e-33 146.4 199 41.7
arahy.Tifrunner.gnm1.ann1.T8IATB Arachis hypogaea HOM05D001530 ORTHO05D004168 4.4e-33 145.6 204 41.7
Nn1g02162 Nelumbo nucifera HOM05D001530 ORTHO05D004168 4.4e-33 145.6 208 39.9
arahy.Tifrunner.gnm1.ann1.6A0E1S Arachis hypogaea HOM05D001530 ORTHO05D004168 3.7e-32 142.5 203 40.9
SGA_v2.0_scaffold39G15367 Striga asiatica HOM05D001530 ORTHO05D004168 4.9e-32 142.1 209 40.2
COL.COLO4_21646 Corchorus olitorius HOM05D001530 ORTHO05D004168 5.4e-31 138.7 208 38.0
Gohir.A09G054800 Gossypium hirsutum HOM05D001530 ORTHO05D004168 5.4e-31 138.7 204 39.7
Ca_21592_v3 Cicer arietinum L. HOM05D001530 ORTHO05D004168 7.0e-31 138.3 101 62.4
GSVIVG01017887001 Vitis vinifera HOM05D001530 ORTHO05D004168 9.2e-31 137.9 84 67.9
Haze_00964 Corylus avellana HOM05D001530 ORTHO05D004168 1.6e-30 137.1 201 38.8
Gorai.006G053500 Gossypium raimondii HOM05D001530 ORTHO05D004168 1.6e-30 137.1 204 39.2
TAR362G0912 Trochodendron aralioides HOM05D001530 ORTHO05D004168 1.6e-30 137.1 122 51.6
Actinidia23475 Actinidia chinensis HOM05D001530 ORTHO05D004168 2.0e-30 136.7 84 69.0
vmacro08275 Vaccinium macrocarpon HOM05D001530 ORTHO05D004168 3.5e-30 136.0 204 37.3
COL.COLO4_23594 Corchorus olitorius HOM05D001530 ORTHO05D004168 5.9e-30 135.2 84 63.1
Gohir.D09G053700 Gossypium hirsutum HOM05D001530 ORTHO05D004168 5.9e-30 135.2 199 39.2
Lalb_Chr07g0177311 Lupinus albus HOM05D001530 ORTHO05D004168 7.7e-30 134.8 84 66.7
CiPaw.02G092300 Carya illinoinensis HOM05D001530 ORTHO05D004168 1.3e-29 134.0 203 39.4
CiPaw.01G159900 Carya illinoinensis HOM05D001530 ORTHO05D004168 1.7e-29 133.7 204 39.7
Glyma.15G103900 Glycine max HOM05D001530 ORTHO05D004168 1.7e-29 133.7 84 65.5
TPR.G20139 Trifolium pratense HOM05D001530 ORTHO05D004168 2.3e-29 133.3 201 40.8
Lj6g0001793 Lotus japonicus HOM05D001530 ORTHO05D004168 2.9e-29 132.9 209 39.2
Psat4g031480 Pisum sativum HOM05D001530 ORTHO05D004168 5.0e-29 132.1 84 66.7
TWI73G0093 Tripterygium wilfordii HOM05D001530 ORTHO05D004168 5.0e-29 132.1 84 65.5
Eucgr.H03601 Eucalyptus grandis HOM05D001530 ORTHO05D004168 6.6e-29 131.7 201 37.8
Migut.N00152 Erythranthe guttata HOM05D001530 ORTHO05D004168 1.9e-28 130.2 86 64.0
Rhsim04G0207100 Rhododendron simsii HOM05D001530 ORTHO05D004168 1.9e-28 130.2 106 53.8
Lj6P565T19 Lonicera japonica HOM05D001530 ORTHO05D004168 2.5e-28 129.8 218 33.5
Thhalv10020342m.g Eutrema salsugineum HOM05D001530 ORTHO05D004168 7.3e-28 128.3 127 46.5
Medtr4g117300 Medicago truncatula HOM05D001530 ORTHO05D004168 7.3e-28 128.3 202 40.1
AL6G30440 Arabidopsis lyrata HOM05D001530 ORTHO05D004168 9.5e-28 127.9 115 50.4
Glyma.13G208900 Glycine max HOM05D001530 ORTHO05D004168 9.5e-28 127.9 207 38.6
Sabra10G0011000 Salix brachista HOM05D001530 ORTHO05D004168 9.5e-28 127.9 219 36.1
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 9.5e-28 127.9 89 58.4
ClCG05G005450 Citrullus lanatus HOM05D001530 ORTHO05D004168 1.2e-27 127.5 208 37.5
VMungo1215G0485 Vigna mungo HOM05D001530 ORTHO05D004168 1.2e-27 127.5 84 61.9
AT5G19060 Arabidopsis thaliana HOM05D001530 ORTHO05D004168 1.6e-27 127.1 84 60.7
arahy.Tifrunner.gnm1.ann1.NX75ZF Arachis hypogaea HOM05D001530 ORTHO05D004168 1.6e-27 127.1 110 53.6
CANSAT78G1099 Cannabis sativa HOM05D001530 ORTHO05D004168 1.6e-27 127.1 208 36.5
Rhsim01G0136800 Rhododendron simsii HOM05D001530 ORTHO05D004168 1.6e-27 127.1 106 51.9
Atru.chr4.2570 Acer truncatum HOM05D001530 ORTHO05D004168 2.1e-27 126.7 227 34.8
Sp6g25320 Schrenkiella parvula HOM05D001530 ORTHO05D004168 2.1e-27 126.7 110 49.1
AL3G17010 Arabidopsis lyrata HOM05D001530 ORTHO05D004168 2.8e-27 126.3 84 57.1
Phvul.006G154000 Phaseolus vulgaris HOM05D001530 ORTHO05D004168 2.8e-27 126.3 162 40.1
Sabra08G0159100 Salix brachista HOM05D001530 ORTHO05D004168 2.8e-27 126.3 85 62.4
Thhalv10013116m.g Eutrema salsugineum HOM05D001530 ORTHO05D004168 4.7e-27 125.6 84 57.1
FAN22G1949 Fragaria x ananassa HOM05D001530 ORTHO05D004168 4.7e-27 125.6 158 39.2
Glyma.07G256900 Glycine max HOM05D001530 ORTHO05D004168 4.7e-27 125.6 84 60.7
RcHm_v2.0_Chr4g0418361 Rosa chinensis HOM05D001530 ORTHO05D004168 4.7e-27 125.6 89 58.4
BraA10t44126Z Brassica rapa HOM05D001530 ORTHO05D004168 6.1e-27 125.2 110 48.2
Medtr4g117290 Medicago truncatula HOM05D001530 ORTHO05D004168 6.1e-27 125.2 131 48.1
PGR004G2377 Punica granatum HOM05D001530 ORTHO05D004168 6.1e-27 125.2 160 40.0
Carub.0003s0559 Capsella rubella HOM05D001530 ORTHO05D004168 8.0e-27 124.8 103 50.5
Ciclev10006522m.g Citrus clementina HOM05D001530 ORTHO05D004168 8.0e-27 124.8 225 36.0
DCAR_027152 Daucus carota HOM05D001530 ORTHO05D004168 8.0e-27 124.8 223 36.8
FvH4_4g14471 Fragaria vesca HOM05D001530 ORTHO05D004168 8.0e-27 124.8 84 58.3
SHI00371 Sapria himalayana HOM05D001530 ORTHO05D004168 8.0e-27 124.8 84 60.7
SHI54791 Sapria himalayana HOM05D001530 ORTHO05D004168 8.0e-27 124.8 84 60.7
Sp3g05110 Schrenkiella parvula HOM05D001530 ORTHO05D004168 8.0e-27 124.8 103 51.5
Aqoxy2G03262 Aquilegia oxysepala HOM05D001530 ORTHO05D004168 1.0e-26 124.4 137 45.3
AT3G06150 Arabidopsis thaliana HOM05D001530 ORTHO05D004168 1.4e-26 124.0 103 48.5
Phvul.003G092800 Phaseolus vulgaris HOM05D001530 ORTHO05D004168 1.4e-26 124.0 84 59.5
Lsat_1_v5_gn_9_77980 Lactuca sativa HOM05D001530 ORTHO05D004168 1.8e-26 123.6 90 56.7
Lj4g0020072 Lotus japonicus HOM05D001530 ORTHO05D004168 1.8e-26 123.6 85 62.4
Sed0013287 Sechium edule HOM05D001530 ORTHO05D004168 2.3e-26 123.2 202 36.6
BcaC04g18623 Brassica carinata HOM05D001530 ORTHO05D004168 3.0e-26 122.9 99 51.5
C09p57420 Brassica napus HOM05D001530 ORTHO05D004168 3.0e-26 122.9 99 51.5
VMungo0540G2153 Vigna mungo HOM05D001530 ORTHO05D004168 4.0e-26 122.5 170 38.2
Aa31LG5G16670 Aethionema arabicum HOM05D001530 ORTHO05D004168 6.8e-26 121.7 95 54.7
CsaV3_3G013750 Cucumis sativus L. HOM05D001530 ORTHO05D004168 8.9e-26 121.3 210 38.1
DCAR_002415 Daucus carota HOM05D001530 ORTHO05D004168 8.9e-26 121.3 174 39.7
Nn4g26192 Nelumbo nucifera HOM05D001530 ORTHO05D004168 8.9e-26 121.3 207 39.6
Rhsim07G0256100 Rhododendron simsii HOM05D001530 ORTHO05D004168 8.9e-26 121.3 106 50.0
BolC9t58611H Brassica oleracea HOM05D001530 ORTHO05D004168 1.2e-25 120.9 99 50.5
Manes.15G023000 Manihot esculenta HOM05D001530 ORTHO05D004168 1.2e-25 120.9 228 32.5
BcaB08g36621 Brassica carinata HOM05D001530 ORTHO05D004168 1.5e-25 120.6 92 55.4
A10p20630 Brassica napus HOM05D001530 ORTHO05D004168 1.5e-25 120.6 84 56.0
C03p42010 Brassica napus HOM05D001530 ORTHO05D004168 1.5e-25 120.6 85 55.3
CARHR080670 Cardamine hirsuta HOM05D001530 ORTHO05D004168 1.5e-25 120.6 131 42.0
MBI17_g12018_MAGBIO Magnolia biondii HOM05D001530 ORTHO05D004168 1.5e-25 120.6 92 52.2
Potri.010G030900 Populus trichocarpa HOM05D001530 ORTHO05D004168 2.0e-25 120.2 85 60.0
MELO3C006569.2 Cucumis melo HOM05D001530 ORTHO05D004168 3.4e-25 119.4 215 36.7
A03p34540 Brassica napus HOM05D001530 ORTHO05D004168 4.4e-25 119.0 130 41.5
BraA03t12631Z Brassica rapa HOM05D001530 ORTHO05D004168 4.4e-25 119.0 130 41.5
Potri.008G202500 Populus trichocarpa HOM05D001530 ORTHO05D004168 5.7e-25 118.6 85 58.8
Potri.008G202400 Populus trichocarpa HOM05D001530 ORTHO05D004168 7.5e-25 118.2 85 58.8
unitig_748.g8349 Utricularia gibba HOM05D001530 ORTHO05D004168 7.5e-25 118.2 88 56.8
BcaC01g04327 Brassica carinata HOM05D001530 ORTHO05D004168 9.8e-25 117.9 130 43.1
BolC3t16482H Brassica oleracea HOM05D001530 ORTHO05D004168 9.8e-25 117.9 130 43.1
Ah.13g074200 Amaranthus hybridus HOM05D001530 ORTHO05D004168 1.3e-24 117.5 214 35.5
BcaC05g30050 Brassica carinata HOM05D001530 ORTHO05D004168 1.3e-24 117.5 85 54.1
Prupe.1G151300 Prunus persica HOM05D001530 ORTHO05D004168 1.3e-24 117.5 204 29.9
QL02p054463 Quercus lobata HOM05D001530 ORTHO05D004168 1.3e-24 117.5 201 35.3
AUR62038221 Chenopodium quinoa HOM05D001530 ORTHO05D004168 1.7e-24 117.1 151 39.7
QL06p004230 Quercus lobata HOM05D001530 ORTHO05D004168 1.7e-24 117.1 196 36.2
Carub.0006s1738 Capsella rubella HOM05D001530 ORTHO05D004168 3.7e-24 115.9 113 46.0
CARHR193930 Cardamine hirsuta HOM05D001530 ORTHO05D004168 4.9e-24 115.5 105 48.6
Glyma.17G017200 Glycine max HOM05D001530 ORTHO05D004168 6.4e-24 115.2 84 58.3
MD13G1183000 Malus domestica HOM05D001530 ORTHO05D004168 8.3e-24 114.8 84 57.1
EL10Ac3g06355 Beta vulgaris HOM05D001530 ORTHO05D004168 1.4e-23 114.0 84 57.1
MD16G1183600 Malus domestica HOM05D001530 ORTHO05D004168 1.4e-23 114.0 84 54.8
Sc19g0004550 Simmondsia chinensis HOM05D001530 ORTHO05D004168 3.2e-23 112.8 84 57.1
unitig_21.g20131 Utricularia gibba HOM05D001530 ORTHO05D004168 7.0e-23 111.7 85 60.0
unitig_32.g10795 Utricularia gibba HOM05D001530 ORTHO05D004168 3.5e-22 109.4 85 52.9
Migut.G00265 Erythranthe guttata HOM05D001530 ORTHO05D004168 3.0e-21 106.3 63 69.8
HanXRQChr06g0181081 Helianthus annuus HOM05D001530 ORTHO05D004168 3.0e-21 106.3 84 54.8
Sed0015286 Sechium edule HOM05D001530 ORTHO05D004168 3.0e-21 106.3 98 53.1
unitig_32.g10794 Utricularia gibba HOM05D001530 ORTHO05D004168 5.0e-21 105.5 114 45.6
BraA05t22902Z Brassica rapa HOM05D001530 ORTHO05D004168 6.6e-21 105.1 219 31.5
Manes.03G184800 Manihot esculenta HOM05D001530 ORTHO05D004168 6.6e-21 105.1 73 58.9
A05p41830 Brassica napus HOM05D001530 ORTHO05D004168 1.1e-20 104.4 217 30.4
RhsimUnG0214000 Rhododendron simsii HOM05D001530 ORTHO05D012928 1.1e-20 104.4 90 52.2
BolC5t34765H Brassica oleracea HOM05D001530 ORTHO05D004168 1.9e-20 103.6 217 30.4
unitig_32.g10797 Utricularia gibba HOM05D001530 ORTHO05D004168 2.5e-20 103.2 90 53.3
BcaC05g29792 Brassica carinata HOM05D001530 ORTHO05D004168 7.3e-20 101.7 217 30.0
C05p61080 Brassica napus HOM05D001530 ORTHO05D004168 9.5e-20 101.3 217 30.0
Os05g0396900 Oryza sativa ssp. japonica HOM05D001530 ORTHO05D004168 2.1e-19 100.1 88 47.7
PSO170G0007 Papaver somniferum HOM05D001530 ORTHO05D004168 2.8e-19 99.8 90 52.2
PSO407G0165 Papaver somniferum HOM05D001530 ORTHO05D004168 4.7e-19 99.0 90 52.2
ECA236G2854 Erigeron canadensis HOM05D001530 ORTHO05D004168 6.2e-19 98.6 85 51.8
Zm00001eb287440 Zea mays HOM05D001530 ORTHO05D004168 1.0e-18 97.8 88 45.5
unitig_32.g10793 Utricularia gibba HOM05D001530 ORTHO05D004168 1.4e-18 97.4 86 51.2
CDE05G3357 Ceratophyllum demersum HOM05D001530 ORTHO05D004168 2.3e-18 96.7 80 52.5
unitig_32.g10796 Utricularia gibba HOM05D001530 ORTHO05D004168 2.3e-18 96.7 86 51.2
AUR62030083 Chenopodium quinoa HOM05D001530 ORTHO05D004168 2.6e-17 93.2 67 55.2
MBI17_g40042_MAGBIO Magnolia biondii HOM05D001530 ORTHO05D004168 3.7e-16 89.4 63 57.1
unitig_21.g20137 Utricularia gibba HOM05D001530 ORTHO05D004168 1.3e-13 80.9 84 46.4
SEGI_10142 Sequoiadendron giganteum HOM05D001530 ORTHO05D004168 1.6e-11 73.9 201 27.9
SEGI_18262 Sequoiadendron giganteum HOM05D001530 ORTHO05D004168 1.6e-11 73.9 201 27.9
ATR0626G152 Amborella trichopoda HOM05D001530 ORTHO05D004168 5.2e-10 68.9 88 39.8
Aa31sc177G50 Aethionema arabicum HOM05D001530 ORTHO05D004168 2.2e-08 63.5 54 50.0
Pp3c1_11910 Physcomitrium patens HOM05D001530 ORTHO05D004168 6.4e-08 62.0 80 37.5
Mapoly0039s0009 Marchantia polymorpha HOM05D001530 ORTHO05D004168 1.1e-07 61.2 80 35.0


User provided reference genes

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