Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002947g0020 Nicotiana tabacum HOM05D003524 ORTHO05D003988 1.9e-63 245.7 127 100.0
Nitab4.5_0002011g0040 Nicotiana tabacum HOM05D003524 ORTHO05D003988 2.0e-17 92.8 47 95.7
PGSC0003DMG400026298 Solanum tuberosum HOM05D003524 ORTHO05D003988 1.2e-14 83.6 47 80.9
Solyc08g006800.3 Solanum lycopersicum HOM05D003524 ORTHO05D003988 3.6e-14 82.0 47 80.9
Sopen08g002750 Solanum pennellii HOM05D003524 ORTHO05D003988 4.6e-14 81.6 47 78.7
Peaxi162Scf00045g02028 Petunia axillaris HOM05D003524 ORTHO05D003988 1.8e-13 79.7 47 78.7
CAN.G353.11 Capsicum annuum HOM05D003524 ORTHO05D003988 2.3e-13 79.3 47 76.6
Migut.A00356 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.3e-11 73.6 47 70.2
SalBow4G2912 Salvia bowleyana HOM05D003524 ORTHO05D003988 4.8e-11 71.6 62 56.5
SGA_v2.0_scaffold22G09905 Striga asiatica HOM05D003524 ORTHO05D003988 8.2e-11 70.9 47 70.2
Eucgr.L02917 Eucalyptus grandis HOM05D003524 ORTHO05D003988 3.1e-10 68.9 47 70.2
Eucgr.C02607 Eucalyptus grandis HOM05D003524 ORTHO05D003988 2.0e-09 66.2 47 68.1
AL7G20150 Arabidopsis lyrata HOM05D003524 ORTHO05D003988 2.6e-09 65.9 47 70.2
AT4G31830 Arabidopsis thaliana HOM05D003524 ORTHO05D003988 2.6e-09 65.9 47 70.2
Lj1g0009607 Lotus japonicus HOM05D003524 ORTHO05D003988 2.6e-09 65.9 47 68.1
Lj5g0020130 Lotus japonicus HOM05D003524 ORTHO05D003988 2.6e-09 65.9 47 68.1
Nn8g39910 Nelumbo nucifera HOM05D003524 ORTHO05D003988 2.6e-09 65.9 47 72.3
unitig_748.g7378 Utricularia gibba HOM05D003524 ORTHO05D003988 2.6e-09 65.9 47 66.0
Carub.0007s0872 Capsella rubella HOM05D003524 ORTHO05D003988 3.4e-09 65.5 47 68.1
A01p06450 Brassica napus HOM05D003524 ORTHO05D003988 5.9e-09 64.7 47 66.0
C01p07090 Brassica napus HOM05D003524 ORTHO05D003988 5.9e-09 64.7 47 66.0
BolC1t00701H Brassica oleracea HOM05D003524 ORTHO05D003988 5.9e-09 64.7 47 66.0
BraA01t00606Z Brassica rapa HOM05D003524 ORTHO05D003988 5.9e-09 64.7 47 66.0
Aa31LG2G18400 Aethionema arabicum HOM05D003524 ORTHO05D003988 7.7e-09 64.3 47 68.1
CARHR239750 Cardamine hirsuta HOM05D003524 ORTHO05D003988 1.3e-08 63.5 47 66.0
Lj5g0009668 Lotus japonicus HOM05D003524 ORTHO05D003988 1.3e-08 63.5 47 66.0
BcaC09g51975 Brassica carinata HOM05D003524 ORTHO05D003988 1.7e-08 63.2 47 63.8
BcaNung03115 Brassica carinata HOM05D003524 ORTHO05D003988 1.7e-08 63.2 47 63.8
BcaC01g01054 Brassica carinata HOM05D003524 ORTHO05D003988 2.2e-08 62.8 47 66.0
BcaC01g01055 Brassica carinata HOM05D003524 ORTHO05D003988 2.2e-08 62.8 47 66.0
A08p18430 Brassica napus HOM05D003524 ORTHO05D003988 2.2e-08 62.8 47 66.0
C03p87500 Brassica napus HOM05D003524 ORTHO05D003988 2.2e-08 62.8 47 66.0
BolC3t21069H Brassica oleracea HOM05D003524 ORTHO05D003988 2.2e-08 62.8 47 66.0
Oeu009646.1 Olea europaea HOM05D003524 ORTHO05D003988 3.8e-08 62.0 47 63.8
GSVIVG01035971001 Vitis vinifera HOM05D003524 ORTHO05D003988 3.8e-08 62.0 47 63.8
MD15G1040800 Malus domestica HOM05D003524 ORTHO05D003988 5.0e-08 61.6 47 63.8
Sp7g29640 Schrenkiella parvula HOM05D003524 ORTHO05D003988 5.0e-08 61.6 47 61.7
THA.LOC104803862 Tarenaya hassleriana HOM05D003524 ORTHO05D003988 5.0e-08 61.6 47 59.6
BcaB03g12722 Brassica carinata HOM05D003524 ORTHO05D003988 6.5e-08 61.2 47 61.7
MELO3C016955.2 Cucumis melo HOM05D003524 ORTHO05D003988 6.5e-08 61.2 47 63.8
Thhalv10026655m.g Eutrema salsugineum HOM05D003524 ORTHO05D003988 8.5e-08 60.8 47 61.7
Psat6g025880 Pisum sativum HOM05D003524 ORTHO05D003988 8.5e-08 60.8 47 61.7
Potri.018G018300 Populus trichocarpa HOM05D003524 ORTHO05D003988 8.5e-08 60.8 47 61.7
TPR.G38873 Trifolium pratense HOM05D003524 ORTHO05D003988 1.1e-07 60.5 47 59.6
ClCG05G016230 Citrullus lanatus HOM05D003524 ORTHO05D003988 1.4e-07 60.1 47 59.6
Sed0019715 Sechium edule HOM05D003524 ORTHO05D003988 1.4e-07 60.1 47 59.6
Haze_21415 Corylus avellana HOM05D003524 ORTHO05D003988 1.9e-07 59.7 47 63.8
Migut.K00320 Erythranthe guttata HOM05D003524 ORTHO05D003988 1.9e-07 59.7 46 63.0
Cc08_g07080 Coffea canephora HOM05D003524 ORTHO05D003988 2.5e-07 59.3 47 59.6
Cc08_g07090 Coffea canephora HOM05D003524 ORTHO05D003988 2.5e-07 59.3 47 59.6
Cc08_g07120 Coffea canephora HOM05D003524 ORTHO05D003988 2.5e-07 59.3 47 59.6
CSS0001588 Camellia sinensis var. sinensis HOM05D003524 ORTHO05D003988 3.2e-07 58.9 47 63.8
PSO339G2253 Papaver somniferum HOM05D003524 ORTHO05D003988 3.2e-07 58.9 47 61.7
PGR044G0872 Punica granatum HOM05D003524 ORTHO05D003988 3.2e-07 58.9 47 59.6
Atru.chr7.2561 Acer truncatum HOM05D003524 ORTHO05D003988 4.2e-07 58.5 47 61.7
DCAR_022861 Daucus carota HOM05D003524 ORTHO05D003988 4.2e-07 58.5 52 57.7
Phvul.001G041500 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 4.2e-07 58.5 47 57.4
Prupe.1G394000 Prunus persica HOM05D003524 ORTHO05D003988 4.2e-07 58.5 47 61.7
QL02p018819 Quercus lobata HOM05D003524 ORTHO05D003988 4.2e-07 58.5 47 63.8
Sabra06G0139800 Salix brachista HOM05D003524 ORTHO05D003988 4.2e-07 58.5 46 60.9
MSTRG.6141 Avicennia marina HOM05D003524 ORTHO05D003988 5.5e-07 58.2 47 59.6
Cfa020822 Carpinus fangiana HOM05D003524 ORTHO05D003988 5.5e-07 58.2 49 59.2
Ciclev10010389m.g Citrus clementina HOM05D003524 ORTHO05D003988 7.2e-07 57.8 46 60.9
MD08G1056200 Malus domestica HOM05D003524 ORTHO05D003988 7.2e-07 57.8 47 61.7
Medtr1g014110 Medicago truncatula HOM05D003524 ORTHO05D003988 7.2e-07 57.8 47 59.6
arahy.Tifrunner.gnm1.ann1.PTAL7S Arachis hypogaea HOM05D003524 ORTHO05D003988 9.4e-07 57.4 47 59.6
arahy.Tifrunner.gnm1.ann1.ZW8IXI Arachis hypogaea HOM05D003524 ORTHO05D003988 9.4e-07 57.4 47 59.6
CiPaw.03G202100 Carya illinoinensis HOM05D003524 ORTHO05D003988 9.4e-07 57.4 47 57.4
Manes.03G008400 Manihot esculenta HOM05D003524 ORTHO05D003988 9.4e-07 57.4 47 59.6
Prupe.7G263500 Prunus persica HOM05D003524 ORTHO05D003988 9.4e-07 57.4 47 61.7
TAR383G0003 Trochodendron aralioides HOM05D003524 ORTHO05D003988 9.4e-07 57.4 46 60.9
TAR625G1231 Trochodendron aralioides HOM05D003524 ORTHO05D003988 9.4e-07 57.4 47 61.7
Haze_21413 Corylus avellana HOM05D003524 ORTHO05D003988 1.2e-06 57.0 47 61.7
SHI21076 Sapria himalayana HOM05D003524 ORTHO05D003988 1.2e-06 57.0 46 58.7
CANSAT25G3000 Cannabis sativa HOM05D003524 ORTHO05D003988 1.6e-06 56.6 47 59.6
COL.COLO4_18953 Corchorus olitorius HOM05D003524 ORTHO05D003988 1.6e-06 56.6 47 59.6
arahy.Tifrunner.gnm1.ann1.36ASSY Arachis hypogaea HOM05D003524 ORTHO05D003988 2.1e-06 56.2 46 60.9
arahy.Tifrunner.gnm1.ann1.YXTM1W Arachis hypogaea HOM05D003524 ORTHO05D003988 2.1e-06 56.2 46 60.9
ClCG06G012430 Citrullus lanatus HOM05D003524 ORTHO05D003988 2.1e-06 56.2 46 56.5
CsaV3_4G036500 Cucumis sativus L. HOM05D003524 ORTHO05D003988 2.1e-06 56.2 47 57.4
CiPaw.07G230500 Carya illinoinensis HOM05D003524 ORTHO05D003988 2.7e-06 55.8 47 61.7
Lsat_1_v5_gn_7_49941 Lactuca sativa HOM05D003524 ORTHO05D003988 2.7e-06 55.8 48 56.2
Lalb_Chr08g0234291 Lupinus albus HOM05D003524 ORTHO05D003988 2.7e-06 55.8 45 60.0
Lalb_Chr14g0361751 Lupinus albus HOM05D003524 ORTHO05D003988 2.7e-06 55.8 47 57.4
TWI34G0563 Tripterygium wilfordii HOM05D003524 ORTHO05D003988 2.7e-06 55.8 47 59.6
Cfa013050 Carpinus fangiana HOM05D003524 ORTHO05D003988 3.6e-06 55.5 47 59.6
AUR62029823 Chenopodium quinoa HOM05D003524 ORTHO05D003988 3.6e-06 55.5 46 56.5
Ca_13066_v3 Cicer arietinum L. HOM05D003524 ORTHO05D003988 3.6e-06 55.5 47 57.4
Phvul.003G155700 Phaseolus vulgaris HOM05D003524 ORTHO05D003988 3.6e-06 55.5 46 58.7
Rhsim03G0257300 Rhododendron simsii HOM05D000122 ORTHO05D000139 3.6e-06 55.5 48 62.5
Sed0002480 Sechium edule HOM05D003524 ORTHO05D003988 3.6e-06 55.5 46 58.7
Sc08g0005190 Simmondsia chinensis HOM05D003524 ORTHO05D003988 3.6e-06 55.5 47 55.3
Sc08g0005200 Simmondsia chinensis HOM05D003524 ORTHO05D003988 3.6e-06 55.5 47 55.3
Rhsim02G0212800 Rhododendron simsii HOM05D003524 ORTHO05D003988 4.7e-06 55.1 46 60.9
Actinidia22287 Actinidia chinensis HOM05D000091 ORTHO05D003988 6.1e-06 54.7 47 59.6
Haze_19201 Corylus avellana HOM05D003524 ORTHO05D003988 6.1e-06 54.7 46 58.7
vmacro06076 Vaccinium macrocarpon HOM05D003524 ORTHO05D003988 6.1e-06 54.7 48 62.5
Cc06_g14890 Coffea canephora HOM05D003524 ORTHO05D003988 7.9e-06 54.3 46 54.3
ECA232G2703 Erigeron canadensis HOM05D003524 ORTHO05D003988 7.9e-06 54.3 48 54.2
Gohir.A05G059800 Gossypium hirsutum HOM05D003524 ORTHO05D003988 7.9e-06 54.3 47 55.3
Gohir.D05G062000 Gossypium hirsutum HOM05D003524 ORTHO05D003988 7.9e-06 54.3 47 55.3
Gorai.009G063100 Gossypium raimondii HOM05D003524 ORTHO05D003988 7.9e-06 54.3 47 55.3
SalBow1G7165 Salvia bowleyana HOM05D003524 ORTHO05D003988 7.9e-06 54.3 46 58.7


User provided reference genes

Program Settings